BAC Information

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BAC

Clone NameB6Ng01-292N03
Chromosome9 (Build37)
Map Location 56,533,784 - 56,687,829
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1
Downstream geneOdf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N03.bB6Ng01-292N03.g
ACCGA089360GA089361
length834728
definitionB6Ng01-292N03.b B6Ng01-292N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,533,784 - 56,534,617)(56,687,112 - 56,687,829)
sequence
gaattcaagaaatgaacgtatcaaagaaagttcttgaaacccaaggccat
atacagaaagacggaaacgtatccaattgaagctgccactgtgtctaggg
accttgactgtgaatgcagtctgtctctcagtagtgagatgcaggcagct
ctcccagcagctctcctggcctacactccaggagctgaatgccaaggtga
gctgctatccacacctgactcactccctttccgccagggctggcatagat
gacctcagaggctggggctgccagccaaatagcatccgtccacagctgta
gcaataaaggccaagaggtgaaagacctcacatgattgaacaggaaatgt
accccccaccaccaccaccacgcttttgaggaagtcctaagtgctaggtg
tgccataggtaccagcaatgcacgacacgagggcatgagggcgtgacata
gaggagtctggccctgtcacaaagccaggtaataagcagaaaaacaagac
acttcctaagagtgtcaagctcagcgacaaccctaacatccagccacaga
ggagggaacaggagaaggacagggggacgctctagacagagggtcagggg
aggtcttcctgaagggggccacaactgaacttaggcttcaggaagtgagg
cttccaggagcctgaggcactgaaggccaagatggggcctttggctctga
tcccaagaacaagaaaagccactggagggccttaaccagataaatgcaat
gatgtttttcttcattgttaaaagtcctctcaagctgccaactggagcct
gggctgcttcccccagagcaaggggggtgggggg
gaattctccctggaacctccaaccccaatcccacttcttctccagagagg
gaaatcacaggggcagagctctgtttcacaggagacacaactgctgtgag
attcctccccgataccagacagttctctgcacccctgcttgttgtcagcc
tgaagatagcgtcgggggagaccgaggcatggactctgagggacagaagg
gacaagagccagaagcagggaggtggggctggaggggaggaggatgccag
agacagacaggtgtgaaagagccagactgagagctttccagaagtttcca
gagacagagacagagcagggacaataagtgaggtatgaagacggggagat
gggacagttaaccggtctcagacgcttgcttaccctgttcatgcaggagt
catgtctcagcctctgccagtgtggaaaacactctggttttgagagacac
tgcatgacctaggccagcccacctaacgtgtgagctctggctattggtct
atatagtggggtaccacctctgcccctgcgaggtctctgaggcttcctag
gggagaccagctgacccttttttgttttttttttgtttttttttttttca
taccctcctctgagttctatgaggcttgagtgctggcaaatggagactag
gccacccttttgaaagtccccaagacagtaaagtgtgtgggaagagggga
tgttccctgtgggggccatgttattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56533784_56534617
seq2: B6Ng01-292N03.b_48_881

seq1  GAATTCAAGAAATGAACGTATCAAAGAAAGTTCTTGAAACCCAAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATGAACGTATCAAAGAAAGTTCTTGAAACCCAAGGCCAT  50

seq1  ATACAGAAAGACGGAAACGTATCCAATTGAAGCTGCCACTGTGTCTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAGACGGAAACGTATCCAATTGAAGCTGCCACTGTGTCTAGGG  100

seq1  ACCTTGACTGTGAATGCAGTCTGTCTCTCAGTAGTGAGATGCAGGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTGTGAATGCAGTCTGTCTCTCAGTAGTGAGATGCAGGCAGCT  150

seq1  CTCCCAGCAGCTCTCCTGGCCTACACTCCAGGAGCTGAATGCCAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCAGCTCTCCTGGCCTACACTCCAGGAGCTGAATGCCAAGGTGA  200

seq1  GCTGCTATCCACACCTGACTCACTCCCTTTCCGCCAGGGCTGGCATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATCCACACCTGACTCACTCCCTTTCCGCCAGGGCTGGCATAGAT  250

seq1  GACCTCAGAGGCTGGGGCTGCCAGCCAAATAGCATCCGTCCACAGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGAGGCTGGGGCTGCCAGCCAAATAGCATCCGTCCACAGCTGTA  300

seq1  GCAATAAAGGCCAAGAGGTGAAAGACCTCACATGATTGAACAGGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGGCCAAGAGGTGAAAGACCTCACATGATTGAACAGGAAATGT  350

seq1  ACCCCCCACCACCACCACCACGCTTTTGAGGAAGTCCTAAGTGCTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACCACCACCACCACGCTTTTGAGGAAGTCCTAAGTGCTAGGTG  400

seq1  TGCCATAGGTACCAGCAATGCACGACACGAGGGCATGAGGGCGTGACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGGTACCAGCAATGCACGACACGAGGGCATGAGGGCGTGACATA  450

seq1  GAGGAGTCTGGCCCTGTCACAAAGCCAGGTAATAAGCAGAAAAACAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCTGGCCCTGTCACAAAGCCAGGTAATAAGCAGAAAAACAAGAC  500

seq1  ACTTCCTAAGAGTGTCAAGCTCAGCGACAACCCTAACATCCAGCCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAGAGTGTCAAGCTCAGCGACAACCCTAACATCCAGCCACAGA  550

seq1  GGAGGGAACAGGAGAAGGACAGGGGGACGCTCTAGACAGAGGGTCAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACAGGAGAAGGACAGGGGGACGCTCTAGACAGAGGGTCAGGGG  600

seq1  AGGTCTTCCTGAAGGGGGCCACAACTGAACTTAGGCTTCAGGAAGTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCCTGAAGGGGGCCACAACTGAACTTAGGCTTCAGGAAGTGAGG  650

seq1  CTTCCAGGAGCCTGAGGCACTGAAGGCCAAGATGGGGCCTTTGGCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAGCCTGAGGCACTGAAGGCCAAGATGGGGCCTTTGGCTCTGA  700

seq1  TCCCAAGAACAAGAAAAGCCACTGGAGGGCCTTAACCAGATAAATGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAACAAGAAAAGCCACTGGAGGGCCTTAACCAGATAAATGCAAT  750

seq1  GATGTTTTTCTTCATTGTTAAAAGTCCTCTCAAGCTGCCAACTGGAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTCTTCATTGTTAAAAGTCCTCTCAAGCTGCCAACTGGAGCCT  800

seq1  GGGCTGCTTCCCCCAGAGCAAGGGGGGTGGGGGG  834
      ||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTTCCCCCAGAGCAAGGGGGGTGGGGGG  834

seq1: chr9_56687112_56687829
seq2: B6Ng01-292N03.g_66_793 (reverse)

seq1  CACAATATCTTGG-CCCCACAGGG-ACAT-CCCTCTT-CCACACACTTTA  46
      ||||||| | ||| |||||||||| |||| ||||||| ||||||||||||
seq2  CACAATAACATGGCCCCCACAGGGAACATCCCCTCTTCCCACACACTTTA  50

seq1  CTGTCTTGGGGACTTTCAAA--GGTGGCCTAGTCTCC-TTTGCCAGCCCT  93
      ||||||||||||||||||||  ||||||||||||||| ||||||||| ||
seq2  CTGTCTTGGGGACTTTCAAAAGGGTGGCCTAGTCTCCATTTGCCAGCACT  100

seq1  C-AGCCTCATAGAACTCAGAGGAGGGTATG--AAAAAAAAAAACAAAAAA  140
      | ||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CAAGCCTCATAGAACTCAGAGGAGGGTATGAAAAAAAAAAAAACAAAAAA  150

seq1  AAAACAAAAAAGGGTCAGCTGGTCTCCCCTAGGAAGCCTCAGAGACCTCG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAGGGTCAGCTGGTCTCCCCTAGGAAGCCTCAGAGACCTCG  200

seq1  CAGGGGCAGAGGTGGTACCCCACTATATAGACCAATAGCCAGAGCTCACA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGAGGTGGTACCCCACTATATAGACCAATAGCCAGAGCTCACA  250

seq1  CGTTAGGTGGGCTGGCCTAGGTCATGCAGTGTCTCTCAAAACCAGAGTGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGTGGGCTGGCCTAGGTCATGCAGTGTCTCTCAAAACCAGAGTGT  300

seq1  TTTCCACACTGGCAGAGGCTGAGACATGACTCCTGCATGAACAGGGTAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACACTGGCAGAGGCTGAGACATGACTCCTGCATGAACAGGGTAAG  350

seq1  CAAGCGTCTGAGACCGGTTAACTGTCCCATCTCCCCGTCTTCATACCTCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGTCTGAGACCGGTTAACTGTCCCATCTCCCCGTCTTCATACCTCA  400

seq1  CTTATTGTCCCTGCTCTGTCTCTGTCTCTGGAAACTTCTGGAAAGCTCTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTCCCTGCTCTGTCTCTGTCTCTGGAAACTTCTGGAAAGCTCTC  450

seq1  AGTCTGGCTCTTTCACACCTGTCTGTCTCTGGCATCCTCCTCCCCTCCAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCTCTTTCACACCTGTCTGTCTCTGGCATCCTCCTCCCCTCCAG  500

seq1  CCCCACCTCCCTGCTTCTGGCTCTTGTCCCTTCTGTCCCTCAGAGTCCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCCTGCTTCTGGCTCTTGTCCCTTCTGTCCCTCAGAGTCCAT  550

seq1  GCCTCGGTCTCCCCCGACGCTATCTTCAGGCTGACAACAAGCAGGGGTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGTCTCCCCCGACGCTATCTTCAGGCTGACAACAAGCAGGGGTGC  600

seq1  AGAGAACTGTCTGGTATCGGGGAGGAATCTCACAGCAGTTGTGTCTCCTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGTCTGGTATCGGGGAGGAATCTCACAGCAGTTGTGTCTCCTG  650

seq1  TGAAACAGAGCTCTGCCCCTGTGATTTCCCTCTCTGGAGAAGAAGTGGGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGAGCTCTGCCCCTGTGATTTCCCTCTCTGGAGAAGAAGTGGGA  700

seq1  TTGGGGTTGGAGGTTCCAGGGAGAATTC  718
      ||||||||||||||||||||||||||||
seq2  TTGGGGTTGGAGGTTCCAGGGAGAATTC  728