BAC Information

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BAC

Clone NameB6Ng01-293C18
Chromosome9 (Build37)
Map Location 64,338,035 - 64,339,168
singlet/doubletsinglet
Overlap geneMegf11
Upstream geneIqch, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293C18.bB6Ng01-293C18.g
ACCGA089618GA089619
length1,2031,127
definitionB6Ng01-293C18.b B6Ng01-293C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctatgacaatctaatttcggagggaacatttaagaggcctga
cacccagacactgtcctcaaggtgaatgatctatgaaggagagtggcctc
ttttgtgttatcacggagtccacggaggaaactaaagctcaccagcctgc
tctttcccagggcaaccataacttctctgcagcggctagccaaaggggaa
ggagcagggagaggctgtgggtgggcaggggaacagggctcttttgggtt
gggcttagagccctatctcctcagaaggatgccagagactggaagccacc
atttatctcaagtgctacacaagtttagggacaaatgaggcatggcttct
aatgactgcccttccattctgcttccaaagaccacaagaaatgttgctcc
ctttcagaagactggctcagagaggagaggcatcgatcagggtattttct
tagctgggtagtgaagtaccagcccacctccatcttagacttaaaagcca
tctaatagtaaagacaagctaggttttttgttttttgtttttttaatctg
tttaatcataaacctcacaaggactgggctatgcccaatctgtaacctga
actacaaatggttctgctctgcctgttccaggaatggcagtcatgtcttt
gtctgaaaaaccaagtttataaccatcttgcaatggttataaacttgttc
aaaaggttttatgactgccctagtaacttattgtgcccaccttgcaacca
tgtctttgtttcaggaggtcattctgactaacgtgtcacgcttatgttca
ttctgctcctgtaaccctgcctatttctttctttttttttttttaatagg
tattttcctcatttacattttcaatgatatcccaaaggtcccccataccc
acctccccaatcccctacccaccactccccctttttggccctggcgttcc
cctgtactgggggcatataaagtttgcaagtccaattgggcctctctttg
cagtgatagccgactaggccatctttttgatacatatgccagctaagaca
agagctcctcgggtactggttaagttcaatatgctggttcaaccttatag
gtatgccaggttcctatagcctcttgagtaatctctaggctcctcattag
gccggtgaaccattccaatggattgagtgatacactatcatcactatgct
gtg
gaattcaaggccagtctggtctacagaatgaattccaggacagccagggc
tacacagagaaaccctgtttcaaaaaacaaaacaaaacaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaaaatgtctgtgctaccacatcttgct
tttcttaaacacggctctgtgtatcaaactcaggacctgtgcttgccaag
tcccttaccagccaagtactttaccaattaattgagttatcttcccagcc
ctactctccctttctttgtgtggcacggtgggggaggtatctgtgtaaag
ggtgcatgaaggcccgagaaggtatgtgccttcactctccacattatttc
cttaagaggaaggcccctcactgagccttgagttaggttggtggccaaca
agctcctgtccctatgcccccactccccatggcaatgggtcacaagtaca
cagaaccttccatgcctggcactttatgtgggctctggggagttgaactc
gggtcctcatgcttagatagcaaactttcttacttgctaagccatctccc
cattccttcactttttctctcctgtcatacatgtatgtatggctttatat
atctatttaaaatctttcctcaggagatgattgatgcatgagacctcatg
aaattgaagcttccatactacaaaggaagcggcgagtctgtgaagagaca
gcctgtaggatggaaggaaatcattacaggttctatgtctgacagcagtt
taatatctagaatttaccaagaactcaagaaatagaaaacagggccagtg
acgtggctaggtggctccagggtaaaaatgtctgctgctgtgtacgcatc
agaactgaggtcagtctctggaatccacagtgcaaggagagaacccagag
ttgccctctgatcctacatgcatgctgtggcacacatgtgcccattgtga
ctctttctctctgtctttctccatcctgtgcacaccactaacattaataa
ataaaatgaaaatttaataaattaaacagaagtcaaacacaatcataaaa
taacttagaaagtgagccggatttctaccctctccacttaaagatgaaga
agctgggctccttaatgctgggagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64338035_64339168
seq2: B6Ng01-293C18.g_66_1192

seq1  GAATTCAAGGCCAGTCTGGTCTACAGAATGAATTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGTCTGGTCTACAGAATGAATTCCAGGACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTTTCAAAAAACAAAACAAAACAAAACAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTTTCAAAAAACAAAACAAAACAAAACAAAACAA  100

seq1  AACAAAACAAAACAAAACAAAACAAAATGTCTGTGCTACCACATCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACAAAATGTCTGTGCTACCACATCTTGCT  150

seq1  TTTCTTAAACACGGCTCTGTGTATCAAACTCAGGACCTGTGCTTGCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAACACGGCTCTGTGTATCAAACTCAGGACCTGTGCTTGCCAAG  200

seq1  TCCCTTACCAGCCAAGTACTTTACCAATTAATTGAGTTATCTTCCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTACCAGCCAAGTACTTTACCAATTAATTGAGTTATCTTCCCAGCC  250

seq1  CTACTCTCCCTTTCTTTGTGTGGCACGGTGGGGGAGGTATCTGTGTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCCCTTTCTTTGTGTGGCACGGTGGGGGAGGTATCTGTGTAAAG  300

seq1  GGTGCATGAAGGCCCGAGAAGGTATGTGCCTTCACTCTCCACATTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGAAGGCCCGAGAAGGTATGTGCCTTCACTCTCCACATTATTTC  350

seq1  CTTAAGAGGAAGGCCCCTCACTGAGCCTTGAGTTAGGTTGGTGGCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGGAAGGCCCCTCACTGAGCCTTGAGTTAGGTTGGTGGCCAACA  400

seq1  AGCTCCTGTCCCTATGCCCCCACTCCCCATGGCAATGGGTCACAAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGTCCCTATGCCCCCACTCCCCATGGCAATGGGTCACAAGTACA  450

seq1  CAGAACCTTCCATGCCTGGCACTTTATGTGGGCTCTGGGGAGTTGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTTCCATGCCTGGCACTTTATGTGGGCTCTGGGGAGTTGAACTC  500

seq1  GGGTCCTCATGCTTAGATAGCAAACTTTCTTACTTGCTAAGCCATCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCATGCTTAGATAGCAAACTTTCTTACTTGCTAAGCCATCTCCC  550

seq1  CATTCCTTCACTTTTTCTCTCCTGTCATACATGTATGTATGGCTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCACTTTTTCTCTCCTGTCATACATGTATGTATGGCTTTATAT  600

seq1  ATCTATTTAAAATCTTTCCTCAGGAGATGATTGATGCATGAGACCTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTAAAATCTTTCCTCAGGAGATGATTGATGCATGAGACCTCATG  650

seq1  AAATTGAAGCTTCCATACTACAAAGGAAGCGGCGAGTCTGTGAAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAGCTTCCATACTACAAAGGAAGCGGCGAGTCTGTGAAGAGACA  700

seq1  GCCTGTAGGATGGAAGGAAATCATTACAGGTTCTATGTCTGACAGCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGGATGGAAGGAAATCATTACAGGTTCTATGTCTGACAGCAGTT  750

seq1  TAATATCTAGAATTTACCAAGAACTCAAGAAATAGAAAACAGGGCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAGAATTTACCAAGAACTCAAGAAATAGAAAACAGGGCCAGTG  800

seq1  ACGTGGCTAGGTGGCTCCAGGGTAAAAATGTCTGCTGCTGTGTACGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCTAGGTGGCTCCAGGGTAAAAATGTCTGCTGCTGTGTACGCATC  850

seq1  AGGAACTGAGGTCAGTCTCTGGAATCCACAGTGCAAGGAGAGAACCCAGA  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAACTGAGGTCAGTCTCTGGAATCCACAGTGCAAGGAGAGAACCCAGA  899

seq1  GTTGCCCTCTGATCCTACATGCATGCTGTGGCACACATGTGCCCATTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTCTGATCCTACATGCATGCTGTGGCACACATGTGCCCATTGTG  949

seq1  ACTCTTTCTCTCTGTCTTTCTCCATCCTGTGCACA-CACTAACATTAATA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTCTTTCTCTCTGTCTTTCTCCATCCTGTGCACACCACTAACATTAATA  999

seq1  AATAAAATGAAAATTTAAATAAATTAAACAAGAAGTCAAACAACCAATCA  1049
      |||||||||||||||| |||||||||||| ||||||||||||  ||||| 
seq2  AATAAAATGAAAATTT-AATAAATTAAAC-AGAAGTCAAACA--CAATC-  1044

seq1  ATAAAATAACTAAGAAAGTGAGCCGGATTTTCTACCCTCTCCACTTTAAA  1099
      ||||||||||| ||||||||||||||| |||||||||||||||| |||||
seq2  ATAAAATAACTTAGAAAGTGAGCCGGA-TTTCTACCCTCTCCAC-TTAAA  1092

seq1  GATGAAGAAGCTGGGGCTCC-TAATGTTGGGAGCCC  1134
      |||||||||||| ||||||| ||||| |||||||||
seq2  GATGAAGAAGCT-GGGCTCCTTAATGCTGGGAGCCC  1127