BAC Information

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BAC

Clone NameB6Ng01-293I02
Chromosome9 (Build37)
Map Location 121,652,545 - 121,729,035
singlet/doubletdoublet
Overlap geneNktr, Kbtbd5, Hhatl, Ccdc13
Upstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1
Downstream geneHigd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293I02.bB6Ng01-293I02.g
ACCGA089868GA089869
length1,1621,094
definitionB6Ng01-293I02.b B6Ng01-293I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,652,545 - 121,653,700)(121,727,964 - 121,729,035)
sequence
gaattctcctacccactacatctccctcctctttgtttgcttttctttca
ataacctactgagcctacttaatgtgcaggggcacagggccaccctgtag
aacataagacacagactgcacccctgaagacaaatgattctccctaaagc
aaaacttgggccattgagctggctcagaggcttctcaccaagcctgacaa
gttgaattgattcctgggatacacattgtgaagagacagtcatcttccac
aagtagttgtctcacatctatatcatggtatgtgcacagtagcacacaca
ggaaatagacagatgaacatgtttttaaagaaggaaaacattaagatcat
tgacaacttccatttcagaatttttagcgcttgatttttttctctttcaa
atttttcttttaaaaaatttcttagctctggattttttactgtgttgttt
tatatatttgtgaaaatcaaatcaacactgagggtgagtgtaagttttgc
tcttgttttattttataaaatactagcattaatgtataaattggtgactt
gatttattttagttattctgagaggagtgatgtgaatgaaaaaagatcag
ttgactcaaacactaaaagagaaaagcctgttgtccgcccagaagagatt
cctccagttcccgagaaccgatttttacttagaagagatatgcctgctat
cactgtggagcctgaacagtaagtaggcaggtgggcgtgttcctcttctc
tgcactgtgtccagtacctcacagaagcaccttgctcatggttcatttca
gacgggataccacggagcagcccacagcacaggacaggaagcagaaggtg
ggagcgctgccactcagctggctttctcctttcctcttttaattctgaac
atggggtagttagtatgcacagtcttgtaggggttgggatatccagtcag
gttgacagtgatgggttagctatcgatagcactgtgtgttctattctctg
atggataagtttcatcagctccttgcagcttaacactccctcccatgact
catgctcagaagtaacaaatgatgttatggatagttcagtcactagttca
gtatagcctgtaccttctctttcagaattccactacttggatatgctata
aggtaaaagaaa
gaattctgtgatcccaggcgagtcatgcaaggaggcaggcactggtggct
gaatgtgcagggagcagggggccctcggggcaagaacagtgttggagtgt
cccagagaagggctggcccgatgggctcactacctcccaggcagagcaga
tctggacctttaacagctgagctttgaggtaggagggaggtcatgcagat
aaagccatcaggaccatcaggaactccaccccagaactgcctgggagcca
tgcagtgagggctagaagggctgggtagcctctcccctgcccacactgag
cgccttgctttgtttcaggttctggccaatgaagttggggaagatgtaaa
catccagcagctgctggcctcacctgggacctggcggggaagggctcaac
aaattctagtgctgcagagcagggtgagtgggctcctcctggaccccgga
gcacacggcactggcgcaggcctgtggctcccacaccatgcccttgcaga
gtgaaggggttttcatttgtttattgcctgcatacgcacttacataacac
tttgcacatgcccagtcctggctcttaaccagccccacagccttgggttt
catttctgtctctgcaggcatgcttgcctgagttcgtttaagtttgcgtg
actgctgtaatgctttttccagtttcataccagaagctttttgttagcca
gtaaaacagcctggtctgcctctttattttctaagtattttggcacacac
ccacaggttgttaagagaagcagtttccagagctgactggcttgagttca
aacccctagagatctcctcaccaccctgtgggactgggcacgcaaattta
ctctctgtgcctcagtctctgcatctgtgtaatggggataacaacacttg
tgcctccctaaccccgaatcctttggtctgttggcaagattggattgtgt
tggcatgtgtaagggggtgggttccctctacatggagctcattccttgaa
gagagcacttagacatggtaagcccgagattactaccctcacttcccacc
ttcacctctccttttgcctgtagagtgcgagaagccttcagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121652545_121653700
seq2: B6Ng01-293I02.b_44_1205

seq1  GAATTCTCCTACCCACTACATCTCCCTCCTCTTTGTTTGCTTTTCTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTACCCACTACATCTCCCTCCTCTTTGTTTGCTTTTCTTTCA  50

seq1  ATAACCTACTGAGCCTACTTAATGTGCAGGGGCACAGGGCCACCCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTACTGAGCCTACTTAATGTGCAGGGGCACAGGGCCACCCTGTAG  100

seq1  AACATAAGACACAGACTGCACCCCTGAAGACAAATGATTCTCCCTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGACACAGACTGCACCCCTGAAGACAAATGATTCTCCCTAAAGC  150

seq1  AAAACTTGGGCCATTGAGCTGGCTCAGAGGCTTCTCACCAAGCCTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGGCCATTGAGCTGGCTCAGAGGCTTCTCACCAAGCCTGACAA  200

seq1  GTTGAATTGATTCCTGGGATACACATTGTGAAGAGACAGTCATCTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTGATTCCTGGGATACACATTGTGAAGAGACAGTCATCTTCCAC  250

seq1  AAGTAGTTGTCTCACATCTATATCATGGTATGTGCACAGTAGCACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTGTCTCACATCTATATCATGGTATGTGCACAGTAGCACACACA  300

seq1  GGAAATAGACAGATGAACATGTTTTTAAAGAAGGAAAACATTAAGATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGACAGATGAACATGTTTTTAAAGAAGGAAAACATTAAGATCAT  350

seq1  TGACAACTTCCATTTCAGAATTTTTAGCGCTTGATTTTTTTCTCTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTTCCATTTCAGAATTTTTAGCGCTTGATTTTTTTCTCTTTCAA  400

seq1  ATTTTTCTTTTAAAAAATTTCTTAGCTCTGGATTTTTTACTGTGTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTAAAAAATTTCTTAGCTCTGGATTTTTTACTGTGTTGTTT  450

seq1  TATATATTTGTGAAAATCAAATCAACACTGAGGGTGAGTGTAAGTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTGAAAATCAAATCAACACTGAGGGTGAGTGTAAGTTTTGC  500

seq1  TCTTGTTTTATTTTATAAAATACTAGCATTAATGTATAAATTGGTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTATTTTATAAAATACTAGCATTAATGTATAAATTGGTGACTT  550

seq1  GATTTATTTTAGTTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTTAGTTATTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAG  600

seq1  TTGACTCAAACACTAAAAGAGAAAAGCCTGTTGTCCGCCCAGAAGAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAAACACTAAAAGAGAAAAGCCTGTTGTCCGCCCAGAAGAGATT  650

seq1  CCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATATGCCTGCTAT  700

seq1  CACTGTGGAGCCTGAACAGTAAGTAGGCAGGTGGGCGTGTTCCTCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAGCCTGAACAGTAAGTAGGCAGGTGGGCGTGTTCCTCTTCTC  750

seq1  TGCACTGTGTCCAGTACCTCACAGAAGCACCTTGCTCATGGTTCATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGTCCAGTACCTCACAGAAGCACCTTGCTCATGGTTCATTTCA  800

seq1  GACGGGATACCACGGAGCAGCCCACAGCACAGGACAGGAAGCAGAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGATACCACGGAGCAGCCCACAGCACAGGACAGGAAGCAGAAGGTG  850

seq1  GGAGCGCTGCCACTCAGCTGGCTTTCTCC-TTCCTCTTTTAA-TCTGAAC  898
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GGAGCGCTGCCACTCAGCTGGCTTTCTCCTTTCCTCTTTTAATTCTGAAC  900

seq1  ATGGGGTAGTTAGTATGCACAGTCTTGTAGGGGTT-GGATATCCAGTCAG  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGGGGTAGTTAGTATGCACAGTCTTGTAGGGGTTGGGATATCCAGTCAG  950

seq1  GTTGACAGTGAT-GGTTAGCTATCGATAGCACTGTGTGTTCTA-TCTCTG  995
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  GTTGACAGTGATGGGTTAGCTATCGATAGCACTGTGTGTTCTATTCTCTG  1000

seq1  ATGGATAAG-TTCATCAGCTCCTTGCAGCTTTACACTCCCTCCCCATGAC  1044
      ||||||||| ||||||||||||||||||||| ||||||||| ||||||||
seq2  ATGGATAAGTTTCATCAGCTCCTTGCAGCTTAACACTCCCT-CCCATGAC  1049

seq1  TCATGCTCAG-AGTACACAAAATGATGTTATGGGTAG-TCAGTCACTAGT  1092
      |||||||||| |||| || |||||||||||||| ||| ||||||||||||
seq2  TCATGCTCAGAAGTA-AC-AAATGATGTTATGGATAGTTCAGTCACTAGT  1097

seq1  CCAAGGAATAGCCTGGACC-TCCCTTTCAGAA-TCCAC-ACTTGAATA-C  1138
       ||  | |||||||| ||| || ||||||||| ||||| ||||| |||  
seq2  TCA--GTATAGCCTGTACCTTCTCTTTCAGAATTCCACTACTTGGATATG  1145

seq1  CTAAATAGGTAAAAGAAA  1156
      ||| | ||||||||||||
seq2  CTATA-AGGTAAAAGAAA  1162

seq1: chr9_121727964_121729035
seq2: B6Ng01-293I02.g_69_1162 (reverse)

seq1  CTTCTGGAAGCTTCT--CACTCTAAAGGCAAAATGAG-GGTGGAGGTGGG  47
      |||||| | ||||||  ||||||| |||||||| ||| |||| |||||||
seq2  CTTCTGAAGGCTTCTCGCACTCTACAGGCAAAAGGAGAGGTGAAGGTGGG  50

seq1  -AGT-AGGGTAGTAAATCTC-GGCTAACC-TGTCT-AGTGCTCTCTTCA-  91
       ||| |||||||| |||||| |||| ||| ||||| ||||||||||||| 
seq2  AAGTGAGGGTAGT-AATCTCGGGCTTACCATGTCTAAGTGCTCTCTTCAA  99

seq1  -GGATG-GCTCCCTGCTGA-GGAACCCACCCC--TACACATGCCAACACA  136
       | ||| ||||| ||  || ||||||||||||  ||||||||||||||||
seq2  GGAATGAGCTCCATGTAGAGGGAACCCACCCCCTTACACATGCCAACACA  149

seq1  AT-CAATCTTGCCAACAGACC-AAGGATTCGGGGTTAGGGAGGCACAAGT  184
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCCAATCTTGCCAACAGACCAAAGGATTCGGGGTTAGGGAGGCACAAGT  199

seq1  GTTGTTATCCCCATTACACAGATGCAGAGACTGAGGCACAGAGAGT-AAT  233
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTGTTATCCCCATTACACAGATGCAGAGACTGAGGCACAGAGAGTAAAT  249

seq1  TTGCGTG-CCAGT-CCACA-GGTGGTGAGGAGATCTCTA-GGGTTTGAAC  279
      ||||||| ||||| ||||| ||||||||||||||||||| ||||||||||
seq2  TTGCGTGCCCAGTCCCACAGGGTGGTGAGGAGATCTCTAGGGGTTTGAAC  299

seq1  TCAAGCCAGTCAGCTCTGG-AACTGCTTCTCTTAACTACCTGT-GGTGTG  327
      ||||||||||||||||||| |||||||||||||||| |||||| ||||||
seq2  TCAAGCCAGTCAGCTCTGGAAACTGCTTCTCTTAACAACCTGTGGGTGTG  349

seq1  TGCCAAAATACTTAGAAAATAAAGAGGCAGACCAGGCTGTTTTACTGGCT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAATACTTAGAAAATAAAGAGGCAGACCAGGCTGTTTTACTGGCT  399

seq1  AACAAAAAGCTTCTGGTATGAAACTGGAAAAAGCATTACAGCAGTCACGC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGCTTCTGGTATGAAACTGGAAAAAGCATTACAGCAGTCACGC  449

seq1  AAACTTAAACGAACTCAGGCAAGCATGCCTGCAGAGACAGAAATGAAACC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAACGAACTCAGGCAAGCATGCCTGCAGAGACAGAAATGAAACC  499

seq1  CAAGGCTGTGGGGCTGGTTAAGAGCCAGGACTGGGCATGTGCAAAGTGTT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTGGGGCTGGTTAAGAGCCAGGACTGGGCATGTGCAAAGTGTT  549

seq1  ATGTAAGTGCGTATGCAGGCAATAAACAAATGAAAACCCCTTCACTCTGC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTGCGTATGCAGGCAATAAACAAATGAAAACCCCTTCACTCTGC  599

seq1  AAGGGCATGGTGTGGGAGCCACAGGCCTGCGCCAGTGCCGTGTGCTCCGG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATGGTGTGGGAGCCACAGGCCTGCGCCAGTGCCGTGTGCTCCGG  649

seq1  GGTCCAGGAGGAGCCCACTCACCCTGCTCTGCAGCACTAGAATTTGTTGA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGAGGAGCCCACTCACCCTGCTCTGCAGCACTAGAATTTGTTGA  699

seq1  GCCCTTCCCCGCCAGGTCCCAGGTGAGGCCAGCAGCTGCTGGATGTTTAC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCCCGCCAGGTCCCAGGTGAGGCCAGCAGCTGCTGGATGTTTAC  749

seq1  ATCTTCCCCAACTTCATTGGCCAGAACCTGAAACAAAGCAAGGCGCTCAG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCCAACTTCATTGGCCAGAACCTGAAACAAAGCAAGGCGCTCAG  799

seq1  TGTGGGCAGGGGAGAGGCTACCCAGCCCTTCTAGCCCTCACTGCATGGCT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGGGGAGAGGCTACCCAGCCCTTCTAGCCCTCACTGCATGGCT  849

seq1  CCCAGGCAGTTCTGGGGTGGAGTTCCTGATGGTCCTGATGGCTTTATCTG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGTTCTGGGGTGGAGTTCCTGATGGTCCTGATGGCTTTATCTG  899

seq1  CATGACCTCCCTCCTACCTCAAAGCTCAGCTGTTAAAGGTCCAGATCTGC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTCCCTCCTACCTCAAAGCTCAGCTGTTAAAGGTCCAGATCTGC  949

seq1  TCTGCCTGGGAGGTAGTGAGCCCATCGGGCCAGCCCTTCTCTGGGACACT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGGAGGTAGTGAGCCCATCGGGCCAGCCCTTCTCTGGGACACT  999

seq1  CCAACACTGTTCTTGCCCCGAGGGCCCCCTGCTCCCTGCACATTCAGCCA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGTTCTTGCCCCGAGGGCCCCCTGCTCCCTGCACATTCAGCCA  1049

seq1  CCAGTGCCTGCCTCCTTGCATGACTCGCCTGGGATCACAGAATTC  1072
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTGCCTCCTTGCATGACTCGCCTGGGATCACAGAATTC  1094