BAC Information

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BAC

Clone NameB6Ng01-293O18
Chromosome9 (Build37)
Map Location 114,683,381 - 114,845,475
singlet/doubletdoublet
Overlap geneCmtm7, Cmtm8, Gpd1l
Upstream geneClasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6
Downstream geneLOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O18.bB6Ng01-293O18.g
ACCGA090184GA090185
length7951,028
definitionB6Ng01-293O18.b B6Ng01-293O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,844,689 - 114,845,475)(114,683,381 - 114,684,401)
sequence
gaattccaggtcagagtgggctgtatatcaaaggcccaaggcaacttatc
aagagcttgtcacaaaataagacagggatgactgccgggcgtggtggcgc
acgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagt
tcaaggccagcctggtctacagagtgagttccaggacagccagggctata
cagagaaaccctgtctcagaaaaccaaaaaaacaaacaaacaaaaaaaga
aaaaaaaaaaagaaaagaaagggatgactacatagctaaataatagaact
cctgtcatacacacacacacacacacacacacacacacacggcctaggat
tgaaccccaacaccattgaaaaaataaagagagagtcatgttttctaata
attctgacctcatgaagagcttttcccactctgtagtttgagccccaaca
gccaaactcacttcgctgtctatttatatcaataccttctggcagctaaa
ctcccacccactcctgaactcagaaggaaatggaccaaagtgagcaccgt
acaggactgaggctagcccaaatggtgcttttcttttcttcatgacaagc
ctttccatctctcagaaaatggtcacttgtgtcaccagtgatgcccacgt
ggtgctggcctccactgtttttcaggaggctcctccgaacccaatggaga
gccctcctctgtgctcaaatttttctatttcaatttatttgtggggttca
ctctctggctccccaaaatgctttcctcttctcaaggcagggtca
gaattcaataggttttgtttttgtttttaacatggggaaagtcataatga
tctcaatgcttgtttatccaaagagaaagggaaagaggaaacctgaagag
ccggggagagagagatggctcagtggttaagaacacccactgttcttcca
gtggagttaggttcagagccaagcatccacaagctcacagctgcccgtag
cctgtaactccagtttcaggggatctgaggtcctgtggtggtgcacttaa
ctcatgcaggcactcacacgtacacaaacataaaaaacaaaaacagaaac
aaatctaaaaagactcacacaggcaggggctggggaagaccgctctggtt
ggggttggtaagtaaggcaaagactgcccacagagtcttatgcttgtaac
ctcgaattctggaggtggaggaaggagggtcaaaaggtcaaggttatatt
taagtacatagcaagcttgaggcttgacacaagaaacccagtctcaaaaa
aaaaaaaaaaaaaaaaaaaaaagcttagattctggattccgacttggccc
aaatccaagtgtctcagtcaaggcttccaggccatggatggatgatgatg
ctcctggccttgctactcatccgtaaacaagggcatgggatataacctcc
tgaggcagtgagagtttagcaaggatacaggagaaagcacccagctcacc
agcccatctttcaattaacggccgcatttctacagtgaagtggtgaaaag
cttttcgtttgttttgcttcttcctaagcaagatgggagttccagctagc
tgttcaggaaaggtgggaatgaaaagccctgaggtcctgctgcaggttct
catctcccctgcttcctgtcttcccaatccatctccgtgataagaaaggg
actttctccgagtctcatggcctgtcttttcagagccccagaaacactta
cctcttcaggtctcagccttgctaactgccagcatgagctgggacctgcc
tgtctggtggaggcctgtctcagcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114844689_114845475
seq2: B6Ng01-293O18.b_50_844 (reverse)

seq1  TGGCCCTGCCTTGAGA--AGGGAAGCTTTCTGGGGAGCCAGAGAGTGGA-  47
      || |||||||||||||  ||| |||| || ||||||||||||||||| | 
seq2  TGACCCTGCCTTGAGAAGAGGAAAGCATTTTGGGGAGCCAGAGAGTGAAC  50

seq1  CCCACAAAT-AACTGAAATAGAAAA--TTGGGCACAGAGGAGGGCTCTCC  94
      ||||||||| || ||||||||||||  ||| |||||||||||||||||||
seq2  CCCACAAATAAATTGAAATAGAAAAATTTGAGCACAGAGGAGGGCTCTCC  100

seq1  ATTGGGTTCGG-GGAGCCTCCTGAAAAACAGTGGAGGCCAGCACCACGTG  143
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTCGGAGGAGCCTCCTGAAAAACAGTGGAGGCCAGCACCACGTG  150

seq1  GGCATCACTGGTGACACAAGTGACCATTTTCTGAGAGATGGAAAGGCTTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACTGGTGACACAAGTGACCATTTTCTGAGAGATGGAAAGGCTTG  200

seq1  TCATGAAGAAAAG-AAAGCACCATTTGGGCTAGCCTCAGTCCTGTACGGT  242
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAAAAGAAAAGCACCATTTGGGCTAGCCTCAGTCCTGTACGGT  250

seq1  GCTCACTTTGGTCCATTTCCTTCTGAGTTCAGGAGTGGGTGGGAGTTTAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTGGTCCATTTCCTTCTGAGTTCAGGAGTGGGTGGGAGTTTAG  300

seq1  CTGCCAGAAGGTATTGATATAAATAGACAGCGAAGTGAGTTTGGCTGTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAAGGTATTGATATAAATAGACAGCGAAGTGAGTTTGGCTGTTG  350

seq1  GGGCTCAAACTACAGAGTGGGAAAAGCTCTTCATGAGGTCAGAATTATTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAACTACAGAGTGGGAAAAGCTCTTCATGAGGTCAGAATTATTA  400

seq1  GAAAACATGACTCTCTCTTTATTTTTTCAATGGTGTTGGGGTTCAATCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATGACTCTCTCTTTATTTTTTCAATGGTGTTGGGGTTCAATCCT  450

seq1  AGGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACAGGAGTTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACAGGAGTTC  500

seq1  TATTATTTAGCTATGTAGTCATCCCTTTCTTTTCTTTTTTTTTTTTCTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAGCTATGTAGTCATCCCTTTCTTTTCTTTTTTTTTTTTCTTT  550

seq1  TTTTGTTTGTTTGTTTTTTTGGTTTTCTGAGACAGGGTTTCTCTGTATAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTTTTTGGTTTTCTGAGACAGGGTTTCTCTGTATAG  600

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  650

seq1  GAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCC  700

seq1  ACCACGCCCGGCAGTCATCCCTGTCTTATTTTGTGACAAGCTCTTGATAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCCGGCAGTCATCCCTGTCTTATTTTGTGACAAGCTCTTGATAA  750

seq1  GTTGCCTTGGGCCTTTGATATACAGCCCACTCTGACCTGGAATTC  787
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGGGCCTTTGATATACAGCCCACTCTGACCTGGAATTC  795

seq1: chr9_114683381_114684401
seq2: B6Ng01-293O18.g_69_1096

seq1  GAATTCAATAGGTTTTGTTTTTGTTTTTAACATGGGGAAAGTCATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGTTTTGTTTTTGTTTTTAACATGGGGAAAGTCATAATGA  50

seq1  TCTCAATGCTTGTTTATCCAAAGAGAAAGGGAAAGAGGAAACCTGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGCTTGTTTATCCAAAGAGAAAGGGAAAGAGGAAACCTGAAGAG  100

seq1  CCGGGGAGAGAGAGATGGCTCAGTGGTTAAGAACACCCACTGTTCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGAGAGAGATGGCTCAGTGGTTAAGAACACCCACTGTTCTTCCA  150

seq1  GTGGAGTTAGGTTCAGAGCCAAGCATCCACAAGCTCACAGCTGCCCGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTAGGTTCAGAGCCAAGCATCCACAAGCTCACAGCTGCCCGTAG  200

seq1  CCTGTAACTCCAGTTTCAGGGGATCTGAGGTCCTGTGGTGGTGCACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTCCAGTTTCAGGGGATCTGAGGTCCTGTGGTGGTGCACTTAA  250

seq1  CTCATGCAGGCACTCACACGTACACAAACATAAAAAACAAAAACAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCAGGCACTCACACGTACACAAACATAAAAAACAAAAACAGAAAC  300

seq1  AAATCTAAAAAGACTCACACAGGCAGGGGCTGGGGAAGACCGCTCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAAAAGACTCACACAGGCAGGGGCTGGGGAAGACCGCTCTGGTT  350

seq1  GGGGTTGGTAAGTAAGGCAAAGACTGCCCACAGAGTCTTATGCTTGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGTAAGTAAGGCAAAGACTGCCCACAGAGTCTTATGCTTGTAAC  400

seq1  CTCGAATTCTGGAGGTGGAGGAAGGAGGGTCAAAAGGTCAAGGTTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATTCTGGAGGTGGAGGAAGGAGGGTCAAAAGGTCAAGGTTATATT  450

seq1  TAAGTACATAGCAAGCTTGAGGCTTGACACAAGAAACCCAGTCTCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATAGCAAGCTTGAGGCTTGACACAAGAAACCCAGTCTCAAAAA  500

seq1  AAAAAAAAAAAAAAAAAAAAAAGCTTAGATTCTGGATTCCGACTTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGCTTAGATTCTGGATTCCGACTTGGCCC  550

seq1  AAATCCAAGTGTCTCAGTCAAGGCTTCCAGGCCATGGATGGATGATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGTGTCTCAGTCAAGGCTTCCAGGCCATGGATGGATGATGATG  600

seq1  CTCCTGGCCTTGCTACTCATCCGTAAACAAGGGCATGGGATATAACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCTTGCTACTCATCCGTAAACAAGGGCATGGGATATAACCTCC  650

seq1  TGAGGCAGTGAGAGTTTAGCAAGGATACAGGAGAAAGCACCCAGCTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGTGAGAGTTTAGCAAGGATACAGGAGAAAGCACCCAGCTCACC  700

seq1  AGCCCATC-TTCAATTAACGGCCGCATTTCTACAGTGAAGTGGTGAAAAG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCTTTCAATTAACGGCCGCATTTCTACAGTGAAGTGGTGAAAAG  750

seq1  C-TTTCGTTTGTTTTGCTTCTTCCTAAGCAAGATGGGAGTTCCAGCTAGC  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCGTTTGTTTTGCTTCTTCCTAAGCAAGATGGGAGTTCCAGCTAGC  800

seq1  TGTTCAGG-AAGGTGGGAATG-AAAGCCCTGAGGTCCTGCTGCAGGTTCT  846
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTCAGGAAAGGTGGGAATGAAAAGCCCTGAGGTCCTGCTGCAGGTTCT  850

seq1  CATCTCCCCTGCTTCCTGTCTTCCC-ATCCATCTCCGTGATAAGAAA-GG  894
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  CATCTCCCCTGCTTCCTGTCTTCCCAATCCATCTCCGTGATAAGAAAGGG  900

seq1  ACTTCTCCCGAGTCTCATGG-CTGTCCTTTCAGAGCCCCAGAAAACACTT  943
      ||||   ||||||||||||| ||||| |||||||||||||| ||||||||
seq2  ACTTTCTCCGAGTCTCATGGCCTGTCTTTTCAGAGCCCCAG-AAACACTT  949

seq1  AC--CCTCAGGTCTCAGCCTTGCTAACTGCCAGCATGAGCTGGGGACCTG  991
      ||  | ||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTCTTCAGGTCTCAGCCTTGCTAACTGCCAGCATGAGCT-GGGACCTG  998

seq1  -CTGTCTGGTGGAGGCTGGGCCTCAGCAGCT  1021
       |||||||||||||||   | ||||||||||
seq2  CCTGTCTGGTGGAGGC-CTGTCTCAGCAGCT  1028