BAC Information

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BAC

Clone NameB6Ng01-294E20
Chromosome9 (Build37)
Map Location 20,364,349 - 20,365,376
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205
Downstream gene2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E20.bB6Ng01-294E20.g
ACCGA090465GA090466
length1,1881,189
definitionB6Ng01-294E20.b B6Ng01-294E20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggtggagaagattccatagggagcatggacacaacaatcaaa
gaaaatgcaaaaggcaaaaagatcctaacccaaaacatccaggaaatgca
ggacacaatgagaagaccaaaactatgaataataagagcaaatgagaatg
aagattttcaacttaaagggccagcaaatatcttcaacaaaattatagaa
gaaaacttcccaaacctaaagaaagagatgtccatgaacatacaagaagt
ctacagaactccaaatagactggatcagaaaggaaattcctcctgacaca
taatattcagaacaacaaatgcactaaatggagataaaatattaaaagca
gtaagggaaaaaggtcaagtaacatataaaggcaggcctattagaattac
accaaacttcttaccagagactatgaaagccagaagatcctggaaagata
ttatacagaccctaagagaacacaaatgccagcccaggctactatgccca
gcaaaaatctcaattactgtagatggagaaaccaaagtattccatgataa
aaccaaattcacacaatatctttccatgaacccaacccttcaaggataat
aaaaggaaaacaccaacacaaggatgaaaactacaccttagaaaaagcaa
gaaagtaatccttcaacaaacctaaaagaatttaactgcaagaacagaat
tccaactttaacaacaaaaatatcaggaagcaacaattacttttctttaa
tttcttttaacatcaatggactcaattcctgttacctccttccagcctag
caaggctggctgagaccattcgctacttaggcagagccacctgctgtgct
gcttctcatccctctcctttgatatgccactacccgctacctgcctgagg
ctgaaactgttcaccaagatcttccagagttagcacataactgcgatctt
tgcaagttcctactaaaaagctgatctgacacttcaagaactttgtgtga
ctgggataggcctcccctcttctttataaagcttgtttgcgacattaagt
tgaactgatcagacactgtctgatccatctttctctcgtgcaggttccct
tctctttcagtcagatggctcaaggctcgaccgactgaagctgcagtcgt
cctaaattcccattaaaggaacacagaccctattatgg
gaattccagtttggttcccatcacccatgctgggtggcttaaactaactg
taagtccagcaacaggggatttgacccctctggctctgcaggcacctgca
ttcacacacagacaccctctttcacatataattaaaaaaaaataggtggc
tagagtgatggttcatcaagtaaaagtgctttgcttgcagaggccctgga
tttggtttggggtgcccacagctcataaccttccttccataactccactt
ccaagagatctgagcccttttctggtctccaaggacactgaacatgtgga
acacagacatgcatgcaggcaaaaccaaaccaaaccaaaacccaaaacta
aacacaaaacaaacccatacccataaaagaacttttaaatttataattaa
atctttaagcaaattagaaacttaaatattctacccttggggcttcctcc
actattgggaattctttcttactttcctcttttctttaataaatgcatgt
caactctgctaaaaaaaatctttttaggagttaagttgggatggtataca
gctgtaccaccaatgctttcaaagctgagatagtaagaatgtaaagttca
agatcagcctgaacaacagagtgttgctcaaaagaccctcactcacaaag
aacacagagactgccatcgctgcaaaccacaagataattctttattcatt
caatgcgttgggggacctccctcagcacccaggcaagaggagagactcca
aacgaacaaaaaacacactttttataccttgtatggagcagatttaggca
acagggctagctggcttattctcatttggtgtagcaaataaccctttcag
gcattgggttggtttgcatgggataactacctctgggcctagtgactcac
tctgcctgcccttatggtgggttattatgattgatcagcaagcagcaata
cattttgaacttatggttcagctattatgtcatggggaattctagcaggt
caggcagttttgtggtcttttctcagaattcagtggtggggcctggttag
gagatttttctggcactgcttaatcttgttttggccagctgcaagcttta
gtctgttcaattttgaccagtacttatataaggttgcaggttctcgagga
ctagagctaggtgggtcttggaaatatattttggtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20364349_20365376
seq2: B6Ng01-294E20.g_226_1256 (reverse)

seq1  AGAAACCAAAATAAATT--CAAGA-CCACCTAGCTCCTTACCCCTCTGAA  47
      ||||||||||||| |||  ||||| |||||||||||  ||  |||| || 
seq2  AGAAACCAAAATATATTTCCAAGACCCACCTAGCTC--TAGTCCTC-GA-  46

seq1  GGGACTTTCCAAACTATATAGTTTACTGGTCAAAA-TGACCAGACT-AAG  95
       | || | | |   ||||||   |||||||||||| ||| |||||| |||
seq2  -GAACCTGCAACCTTATATA-AGTACTGGTCAAAATTGAACAGACTAAAG  94

seq1  CCTGCAGCT-GCCAAAACAAGATT-AGCAGTTCCCAGAAAAATTCTCCTA  143
      | ||||||| |||||||||||||| ||||| | ||||||||| |||||||
seq2  CTTGCAGCTGGCCAAAACAAGATTAAGCAG-TGCCAGAAAAA-TCTCCTA  142

seq1  CCCA-GCCCCA-CACTGAATTCTGAG-AAAGACCAC-AAACTGCCCTGAC  189
       ||| |||||| |||||||||||||| ||||||||| |||||| ||||||
seq2  ACCAGGCCCCACCACTGAATTCTGAGAAAAGACCACAAAACTG-CCTGAC  191

seq1  CTTGCTAGAATTCCCCATGACATTAATAGCTGAACCATAAGTTCAAAATG  239
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  C-TGCTAGAATTCCCCATGACA-TAATAGCTGAACCATAAGTTCAAAATG  239

seq1  TATTGCTGCTTTGCTGATCAATCATAATAACCCACCATAAGGGCAGGCAG  289
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGC-TTGCTGATCAATCATAATAACCCACCATAAGGGCAGGCAG  288

seq1  AGTGAGTCACTAGG-CCAGAGGTAGTTATCCCATGCAAACCAA-CCAATG  337
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  AGTGAGTCACTAGGCCCAGAGGTAGTTATCCCATGCAAACCAACCCAATG  338

seq1  CCTGAAAGGGTTATTTGCTACACC-AATGAGAATAAGCCAGCTAGCCCTG  386
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGAAAGGGTTATTTGCTACACCAAATGAGAATAAGCCAGCTAGCCCTG  388

seq1  TTGCCTAAATCTGCTCCATACAAGGTATAAAAAGTGTGTTTTTTGTTCGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAATCTGCTCCATACAAGGTATAAAAAGTGTGTTTTTTGTTCGT  438

seq1  TTGGAGTCTCTCCTCTTGCCTGGGTGCTGAGGGAGGT-CCCCAACGCATT  485
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGAGTCTCTCCTCTTGCCTGGGTGCTGAGGGAGGTCCCCCAACGCATT  488

seq1  GAATGAATAAAGAATTATCTTGTGGTTTGCAGCGATGGCAGTCTCTGTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAAAGAATTATCTTGTGGTTTGCAGCGATGGCAGTCTCTGTGT  538

seq1  TCTTTGTGAGTGAGGGTCTTTTGAGCAACACTCTGTTGTTCAGGCTGATC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGAGTGAGGGTCTTTTGAGCAACACTCTGTTGTTCAGGCTGATC  588

seq1  TTGAACTTTACATTCTTACTATCTCAGCTTTGAAAGCATTGGTGGTACAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTACATTCTTACTATCTCAGCTTTGAAAGCATTGGTGGTACAG  638

seq1  CTGTATACCATCCCAACTTAACTCCTAAAAAGATTTTTTTTAGCAGAGTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCATCCCAACTTAACTCCTAAAAAGATTTTTTTTAGCAGAGTT  688

seq1  GACATGCATTTATTAAAGAAAAGAGGAAAGTAAGAAAGAATTCCCAATAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCATTTATTAAAGAAAAGAGGAAAGTAAGAAAGAATTCCCAATAG  738

seq1  TGGAGGAAGCCCCAAGGGTAGAATATTTAAGTTTCTAATTTGCTTAAAGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGCCCCAAGGGTAGAATATTTAAGTTTCTAATTTGCTTAAAGA  788

seq1  TTTAATTATAAATTTAAAAGTTCTTTTATGGGTATGGGTTTGTTTTGTGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATAAATTTAAAAGTTCTTTTATGGGTATGGGTTTGTTTTGTGT  838

seq1  TTAGTTTTGGGTTTTGGTTTGGTTTGGTTTTGCCTGCATGCATGTCTGTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGGGTTTTGGTTTGGTTTGGTTTTGCCTGCATGCATGTCTGTG  888

seq1  TTCCACATGTTCAGTGTCCTTGGAGACCAGAAAAGGGCTCAGATCTCTTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGTTCAGTGTCCTTGGAGACCAGAAAAGGGCTCAGATCTCTTG  938

seq1  GAAGTGGAGTTATGGAAGGAAGGTTATGAGCTGTGGGCACCCCAAACCAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGTTATGGAAGGAAGGTTATGAGCTGTGGGCACCCCAAACCAA  988

seq1  ATCCAGGGCCTCTGCAAGCAAAGCACTTTTACTTGATGAACCA  1028
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCCTCTGCAAGCAAAGCACTTTTACTTGATGAACCA  1031