BAC Information

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BAC

Clone NameB6Ng01-294G22
Chromosome9 (Build37)
Map Location 118,451,794 - 118,583,482
singlet/doubletdoublet
Overlap geneGolga4, Itga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294G22.bB6Ng01-294G22.g
ACCGA090562GA090563
length9521,135
definitionB6Ng01-294G22.b B6Ng01-294G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,582,544 - 118,583,482)(118,451,794 - 118,452,927)
sequence
ccacttccacgtccccaagtctgggatgtgaaaccgggactttgattagc
cctggtttcgatgccaagtttgacaatagcctgtgacaactttcaggccc
tctgtgcatccctttgtccctagattatatcttaaaatatgtttctcaga
ggcctggggatgtggctcagggggtagaatgcttgcccagtataaacaaa
gctctgggctctattactcgcaccatataaagcggagtttcgtggcacac
acaggaatcctagcactttgtgggtagaggaaggagaatcagaaattaaa
ggatgctctaagctaccttaaataagtttgagaccagcctgggctacaca
aaacactgtccaaaaatagttaaatattaaaaacaaattagactccactg
gcttagtacacaggtggtttggcaaagatgtcaaccatagaggaagttgc
atctctctttttatatatgaagctgtggggatgagcaagccgttgagcag
gcaaaggtgcttaccacaaaacttcactgccctgagttcaatccctggga
cacatggtggaacaaaaccatctcccacaagctgtcttctgacccccaca
tgcatgagcgtgtacttatacatctctctctctctctctctctctctctc
tctctctctctctctctcacacacacacacacacacacacacacacacac
acagagagtaaaataaatagtgtaaaaataaacagcttccaattctagat
gaaaatgtccctgttggggctggagagacagatcagcagttatatcagtc
cttgcagaggaccgaggttcttgttttcccagcagctgcatcttcttcat
aaccaccaggtaactccagttcttaaagaaaccagcaccctcttcctacc
ctcaccctcttcttgacctctgaaaggcactgcatctgtgtttgttgtgt
gt
gaattcttatatataatgctaaggtactaacatgattgaatgttttgtgt
catattgaatacacatcatttccttcataaccattcctctgttgataact
agtagcttttaaactatttttaagcttttactcttcaaaaacactgtaac
agttctccaatacagattagtttttaatctttgatttttttcttctctca
catcatttttatctatataaggctttagtcttttttttttattagttagg
tgattcaaatatagctatagctaaagagaaatcatgagtcacagcgttaa
gtttctccccaagtaaaggagagagctcaagtcgtgatgtgcttgccaca
ggaggatgggagaagttccaatccctagcacctgtagaagctgacatgta
gtttgtactcgttaatcccagtgctggagaggtgggggcaggcaggtgtc
tggggcttgttcccaaccatgtcaacctgcttgatgggctcctggccagt
gttagagaacctgtttcaaaaaagcaagtcggatggcttctgaggaacaa
aatctgagattaatctctgccctctacgtgaatatacacaagcctgcaca
caaacacacacacacacacacacacacacacacacacacacacacacaca
cttataattatgtaatgtgtagaatatttcacatggactaggaggtttct
cagagtgcactaactttcataagccttggtttttttttctacaccccatc
tctgctgaatttatgtgtttattaaatgattggctgcatgtaaaaacttg
ggttaaagtcatgagattctgtgctttgttactgcccgagttatattttc
ttttgtatggtccagcctgataagcctgacagaaagaacatgtgcacttg
aagtctgggcaaacatttgaaataggcagatttgtgcatagaacaagaca
aaccacctgtgtgtttaatgctgtgttagctgttgatgtgtatgtacagt
ttcccttgaatctccaagtctcactgaacatcttattttttgtgcatcca
cacatgccaataagtgaaatccggtgccttccaagcctgtatgaacagga
cctggggtaaggctgctttcttttctggtttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118582544_118583482
seq2: B6Ng01-294G22.b_54_1005 (reverse)

seq1  --ACAC-ACACACACAGATGCAGTGCC-TTCAGAGGTC-AGAAGAGGGTG  45
        |||| ||| |||||||||||||||| |||||||||| |||||||||||
seq2  ACACACAACAAACACAGATGCAGTGCCTTTCAGAGGTCAAGAAGAGGGTG  50

seq1  A-GGTAGGAAGAGGGTGCTGGTTTCTCT-AGAACTGGAGTTACCT-GTGG  92
      | |||||||||||||||||||||||| | |||||||||||||||| ||||
seq2  AGGGTAGGAAGAGGGTGCTGGTTTCTTTAAGAACTGGAGTTACCTGGTGG  100

seq1  TTGTG-AGAAGATGCAGCTGCTGGG--AACCAG-ACCTCGGTCCTCTGC-  137
      || || |||||||||||||||||||  ||| || ||||||||||||||| 
seq2  TTATGAAGAAGATGCAGCTGCTGGGAAAACAAGAACCTCGGTCCTCTGCA  150

seq1  AGTGCTGATCTAACTGCTGATCTGTCTCTCCAGCCCCAACAGGGACATTT  187
      ||  ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGATATAACTGCTGATCTGTCTCTCCAGCCCCAACAGGGACATTT  200

seq1  TCATCTAGAATTGG-AGCTGTTTATTTTTACACTTATTTATTTTACTCTC  236
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TCATCTAGAATTGGAAGCTGTTTATTTTTACAC-TATTTATTTTACTCTC  249

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG  299

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTATAAGTACACGCTCAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTATAAGTACACGCTCAT  349

seq1  GCATGTGGGGGTCAGAAGACAGCTTGTGGGAGATGGTTTTGTTCCACCAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGGGTCAGAAGACAGCTTGTGGGAGATGGTTTTGTTCCACCAT  399

seq1  GTGTCCCAGGGATTGAACTCAGGGCAGTGAAGTTTTGTGGTAAGCACCTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAGGGATTGAACTCAGGGCAGTGAAGTTTTGTGGTAAGCACCTT  449

seq1  TGCCTGCTCAACGGCTTGCTCATCCCCACAGCTTCATATATAAAAAGAGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCAACGGCTTGCTCATCCCCACAGCTTCATATATAAAAAGAGA  499

seq1  GATGCAACTTCCTCTATGGTTGACATCTTTGCCAAACCACCTGTGTACTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACTTCCTCTATGGTTGACATCTTTGCCAAACCACCTGTGTACTA  549

seq1  AGCCAGTGGAGTCTAATTTGTTTTTAATATTTAACTATTTTTGGACAGTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGGAGTCTAATTTGTTTTTAATATTTAACTATTTTTGGACAGTG  599

seq1  TTTTGTGTAGCCCAGGCTGGTCTCAAACTTATTTAAGGTAGCTTAGAGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTAGCCCAGGCTGGTCTCAAACTTATTTAAGGTAGCTTAGAGCA  649

seq1  TCCTTTAATTTCTGATTCTCCTTCCTCTACCCACAAAGTGCTAGGATTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATTTCTGATTCTCCTTCCTCTACCCACAAAGTGCTAGGATTCC  699

seq1  TGTGTGTGCCACGAAACTCCGCTTTATATGGTGCGAGTAATAGAGCCCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCCACGAAACTCCGCTTTATATGGTGCGAGTAATAGAGCCCAG  749

seq1  AGCTTTGTTTATACTGGGCAAGCATTCTACCCCCTGAGCCACATCCCCAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTTATACTGGGCAAGCATTCTACCCCCTGAGCCACATCCCCAG  799

seq1  GCCTCTGAGAAACATATTTTAAGATATAATCTAGGGACAAAGGGATGCAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAGAAACATATTTTAAGATATAATCTAGGGACAAAGGGATGCAC  849

seq1  AGAGGGCCTGAAAGTTGTCACAGGCTATTGTCAAACTTGGCATCGAAACC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCTGAAAGTTGTCACAGGCTATTGTCAAACTTGGCATCGAAACC  899

seq1  AGGGCTAATCAAAGTCCCGGTTTCACATCCCAGACTTGGGGACGTGGAAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAATCAAAGTCCCGGTTTCACATCCCAGACTTGGGGACGTGGAAG  949

seq1  TGG  939
      |||
seq2  TGG  952

seq1: chr9_118451794_118452927
seq2: B6Ng01-294G22.g_65_1199

seq1  GAATTCTTATATATAATGCTAAGGTACTAACATGATTGAATGTTTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATATAATGCTAAGGTACTAACATGATTGAATGTTTTGTGT  50

seq1  CATATTGAATACACATCATTTCCTTCATAACCATTCCTCTGTTGATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAATACACATCATTTCCTTCATAACCATTCCTCTGTTGATAACT  100

seq1  AGTAGCTTTTAAACTATTTTTAAGCTTTTACTCTTCAAAAACACTGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTTTAAACTATTTTTAAGCTTTTACTCTTCAAAAACACTGTAAC  150

seq1  AGTTCTCCAATACAGATTAGTTTTTAATCTTTGATTTTTTTCTTCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCAATACAGATTAGTTTTTAATCTTTGATTTTTTTCTTCTCTCA  200

seq1  CATCATTTTTATCTATATAAGGCTTTAGTCTTTTTTTTTTATTAGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTTATCTATATAAGGCTTTAGTCTTTTTTTTTTATTAGTTAGG  250

seq1  TGATTCAAATATAGCTATAGCTAAAGAGAAATCATGAGTCACAGCGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAATATAGCTATAGCTAAAGAGAAATCATGAGTCACAGCGTTAA  300

seq1  GTTTCTCCCCAAGTAAAGGAGAGAGCTCAAGTCGTGATGTGCTTGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCCAAGTAAAGGAGAGAGCTCAAGTCGTGATGTGCTTGCCACA  350

seq1  GGAGGATGGGAGAAGTTCCAATCCCTAGCACCTGTAGAAGCTGACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGGAGAAGTTCCAATCCCTAGCACCTGTAGAAGCTGACATGTA  400

seq1  GTTTGTACTCGTTAATCCCAGTGCTGGAGAGGTGGGGGCAGGCAGGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACTCGTTAATCCCAGTGCTGGAGAGGTGGGGGCAGGCAGGTGTC  450

seq1  TGGGGCTTGTTCCCAACCATGTCAACCTGCTTGATGGGCTCCTGGCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTGTTCCCAACCATGTCAACCTGCTTGATGGGCTCCTGGCCAGT  500

seq1  GTTAGAGAACCTGTTTCAAAAAAGCAAGTCGGATGGCTTCTGAGGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAACCTGTTTCAAAAAAGCAAGTCGGATGGCTTCTGAGGAACAA  550

seq1  AATCTGAGATTAATCTCTGCCCTCTACGTGAATATACACAAGCCTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGATTAATCTCTGCCCTCTACGTGAATATACACAAGCCTGCACA  600

seq1  CAAACACACACACACACACACACACACACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACACACACACACACACACACACACACACACACACACACACA  650

seq1  CTTATAATTATGTAATGTGTAGAATATTTCACATGGACTAGGAGGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATTATGTAATGTGTAGAATATTTCACATGGACTAGGAGGTTTCT  700

seq1  CAGAGTGCACTAACTTTCATAAGCCTTGGTTTTTTTTTCTACACCCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCACTAACTTTCATAAGCCTTGGTTTTTTTTTCTACACCCCATC  750

seq1  TCTGCTGAATTTATGTGTTTATTAAATGATTGGCTGCATGTAAAAACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAATTTATGTGTTTATTAAATGATTGGCTGCATGTAAAAACTTG  800

seq1  GGTT-AAGTCATGAGATTCTGTGCTTTGTTACTG-CCGAGTTATATTTTC  848
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTTAAAGTCATGAGATTCTGTGCTTTGTTACTGCCCGAGTTATATTTTC  850

seq1  TTTTGTATGGTCCAGCCTGATAAGCCTGACAG-AAGAACATGTGCACTTG  897
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTGTATGGTCCAGCCTGATAAGCCTGACAGAAAGAACATGTGCACTTG  900

seq1  AAGTCTGGGCAAACATTTGAAATAAGGCAGATTTGTGCATAG-ACAAGAC  946
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  AAGTCTGGGCAAACATTTGAAAT-AGGCAGATTTGTGCATAGAACAAGAC  949

seq1  AAAACCACCTGTGTGTTTAATGCTGTGTTAGCTGTTGATGTGTATGTAAC  996
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -AAACCACCTGTGTGTTTAATGCTGTGTTAGCTGTTGATGTGTATGT-AC  997

seq1  AGTTT-CCTTGAATCT-CAAGTCTCACTGAACATCTTA-TTTTTGTGCAT  1043
      ||||| |||||||||| ||||||||||||||||||||| |||||||||||
seq2  AGTTTCCCTTGAATCTCCAAGTCTCACTGAACATCTTATTTTTTGTGCAT  1047

seq1  CCACACATGCCAATAAGTGAATCCCGGTGCCTTTCCCAAGCCTTGTATGA  1093
      |||||||||||||||||||||  ||||||||||  ||||||| |||||||
seq2  CCACACATGCCAATAAGTGAAATCCGGTGCCTT--CCAAGCC-TGTATGA  1094

seq1  ACAGGA-CTGGGGTAAGGCTGGCTTTCTTTTCTGTTTTTTCT  1134
      |||||| ||||||||||||| ||||||||||||| |||||||
seq2  ACAGGACCTGGGGTAAGGCT-GCTTTCTTTTCTGGTTTTTCT  1135