BAC Information

Click to search

BAC

Clone NameB6Ng01-294H08
Chromosome9 (Build37)
Map Location 80,668,051 - 80,781,033
singlet/doubletdoublet
Overlap genenone
Upstream geneFilip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H08.bB6Ng01-294H08.g
ACCGA090578GA090579
length7711,084
definitionB6Ng01-294H08.b B6Ng01-294H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,668,051 - 80,668,821)(80,779,978 - 80,781,033)
sequence
gaattctgtctttaatattattcttaactaatttaaaaataaagtttcat
ttttttcactgaaggtctaattatactattaagctattcatcaagaggag
ttatgtcctgtggtattattgaggaaagttcagctaaaagaaatggccta
gtgggaagaatagaaggttcattcattgcaatgatggtcaatttattgta
attaccagttaacaagatgaaatctgttctcaggcctcttgtcgccatgg
gtacctgacacttcctattagacatcatgctggctgatggatttatcctt
agagtgacagtgtcaatgaacatgtgttgaatgtgactcttccagactca
ggactaatcagtagctggtcatcttgccagggaaaaatggcatttgttca
ggaatgatataaaggcacttgcagttctttccttataccattcacataac
aattaaattcattttgttttttcttaccaataactttacctcatgtgttt
taagatactgttgctttatatatatacatacatactttttgatgtgtctt
gttataatgggttgtcagtgttaaactgaagaaggaaggagtgacagttg
agagtgcaggggctcaggaatgagtcgtaaatgattctgctgacttctgg
tgtgcatacagacagcttattatcttaattttaaaaatcatgtttacgct
ggcagaacctcccaggaaacagccacaccaggttcctgtcagcaaggtgg
gattggggagggagattttgt

gaattcctatcacgcgtaaacaccttctgcaaagtggccgaatacaaaat
taactgaaaaaattagtagccctcctttatacaaatgataaacaggctga
gaaaaatttagggaaacaacatcataatgtatgtacaacacagaaacata
cataaacataaataaataaaatatgtgcaaataatccgatttcatcatag
catttttcataataaaagtgtcagttaaaacaaaactgattttaaaagca
aagcagccaggaatggtggcatacacctgtactcgggagcctgaggcaag
agagtgacacattggatgtcagcatagctacatagcaaatgcagtggcag
cctgaatatatagtgaaattccctcttaggaaaaaacagaaaactgataa
aaatgatgacacacaacatacagtgagtggatcattacatgttacttctt
aatttatattagtaaattacaatgtatattagtggtaaataactatggta
tatattatacatgtgatattatacatgctatatatatagtgtgtgtgtgt
gtgtgagagagagagagagagagacagagggagagacagagacatagaga
cagagagagacagagagagatcatggatagcatttatgatgtaaataaac
atcaattggaaacatttcaaaaggtttttggtttgacgggggtagatatt
gaaccagggtatgttcagcaaaagctctcctactaaccacacctctaccc
catcagtcactgtgactgttgtttgtagtatcatctctaatgattttgag
taacctttcttttttccatgtcagtatttttcataatttataaatcattt
tttaagtcccacgtttttgatagtattccaggtagatttatacttttaac
ccagcttaatgaattattggatccataagcttcaacagaaaatattttgg
aaaaccctgatataaaacctactttccttcaccctaatttcatgtaataa
ggatttctttcatgaatcacctgtaaggggcacaaaatttatgaaagtac
tctccaaattttaaaagaatttttattaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80668051_80668821
seq2: B6Ng01-294H08.b_48_818

seq1  GAATTCTGTCTTTAATATTATTCTTAACTAATTTAAAAATAAAGTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTAATATTATTCTTAACTAATTTAAAAATAAAGTTTCAT  50

seq1  TTTTTTCACTGAAGGTCTAATTATACTATTAAGCTATTCATCAAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTGAAGGTCTAATTATACTATTAAGCTATTCATCAAGAGGAG  100

seq1  TTATGTCCTGTGGTATTATTGAGGAAAGTTCAGCTAAAAGAAATGGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCTGTGGTATTATTGAGGAAAGTTCAGCTAAAAGAAATGGCCTA  150

seq1  GTGGGAAGAATAGAAGGTTCATTCATTGCAATGATGGTCAATTTATTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGAATAGAAGGTTCATTCATTGCAATGATGGTCAATTTATTGTA  200

seq1  ATTACCAGTTAACAAGATGAAATCTGTTCTCAGGCCTCTTGTCGCCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGTTAACAAGATGAAATCTGTTCTCAGGCCTCTTGTCGCCATGG  250

seq1  GTACCTGACACTTCCTATTAGACATCATGCTGGCTGATGGATTTATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGACACTTCCTATTAGACATCATGCTGGCTGATGGATTTATCCTT  300

seq1  AGAGTGACAGTGTCAATGAACATGTGTTGAATGTGACTCTTCCAGACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACAGTGTCAATGAACATGTGTTGAATGTGACTCTTCCAGACTCA  350

seq1  GGACTAATCAGTAGCTGGTCATCTTGCCAGGGAAAAATGGCATTTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATCAGTAGCTGGTCATCTTGCCAGGGAAAAATGGCATTTGTTCA  400

seq1  GGAATGATATAAAGGCACTTGCAGTTCTTTCCTTATACCATTCACATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATATAAAGGCACTTGCAGTTCTTTCCTTATACCATTCACATAAC  450

seq1  AATTAAATTCATTTTGTTTTTTCTTACCAATAACTTTACCTCATGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTCATTTTGTTTTTTCTTACCAATAACTTTACCTCATGTGTTT  500

seq1  TAAGATACTGTTGCTTTATATATATACATACATACTTTTTGATGTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACTGTTGCTTTATATATATACATACATACTTTTTGATGTGTCTT  550

seq1  GTTATAATGGGTTGTCAGTGTTAAACTGAAGAAGGAAGGAGTGACAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATGGGTTGTCAGTGTTAAACTGAAGAAGGAAGGAGTGACAGTTG  600

seq1  AGAGTGCAGGGGCTCAGGAATGAGTCGTAAATGATTCTGCTGACTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAGGGGCTCAGGAATGAGTCGTAAATGATTCTGCTGACTTCTGG  650

seq1  TGTGCATACAGACAGCTTATTATCTTAATTTTAAAAATCATGTTTACGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATACAGACAGCTTATTATCTTAATTTTAAAAATCATGTTTACGCT  700

seq1  GGCAGAACCTCCCAGGAAACAGCCACACCAGGTTCCTGTCAGCAAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACCTCCCAGGAAACAGCCACACCAGGTTCCTGTCAGCAAGGTGG  750

seq1  GATTGGGGAGGGAGATTTTGT  771
      |||||||||||||||||||||
seq2  GATTGGGGAGGGAGATTTTGT  771


seq1: chr9_80779978_80781033
seq2: B6Ng01-294H08.g_66_1149 (reverse)

seq1  TTTTCTTAAT-AAAATTTATTTAAAATTTGAAG-GTAC-TTCCTAAA-TT  46
      |||||||||| ||||||  ||||||||||| || |||| ||| |||| ||
seq2  TTTTCTTAATAAAAATTCTTTTAAAATTTGGAGAGTACTTTCATAAATTT  50

seq1  TGTGCCCC-TACA-GTGA-TCATG-AAGAATGCCTAATTACATG-AATTA  91
      |||||||| |||| |||| ||||| |||||  ||| |||||||| |||||
seq2  TGTGCCCCTTACAGGTGATTCATGAAAGAAATCCTTATTACATGAAATTA  100

seq1  GGGTGAAG--AAGTAG--TTTATATCAGG--TTTTCAAAATA-TTTCTGT  134
      ||||||||  ||||||  |||||||||||  ||| ||||||| |||||||
seq2  GGGTGAAGGAAAGTAGGTTTTATATCAGGGTTTTCCAAAATATTTTCTGT  150

seq1  TG-AGCTTAT-GAT-CAAT-ATTCATTAAGCTGG--TTAAAGTATAAATC  178
      || ||||||| ||| |||| ||||||||||||||  | ||||||||||||
seq2  TGAAGCTTATGGATCCAATAATTCATTAAGCTGGGTTAAAAGTATAAATC  200

seq1  TACCTGGAATACTATC-AAAACGTGGGACTT-AAAAATGATTTATAAATT  226
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TACCTGGAATACTATCAAAAACGTGGGACTTAAAAAATGATTTATAAATT  250

seq1  ATG-AAAATACTGACATGG-AAAAAGAAA-GTTACTCAAAATCATTAGAG  273
      ||| ||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  ATGAAAAATACTGACATGGAAAAAAGAAAGGTTACTCAAAATCATTAGAG  300

seq1  ATGATACTACAAACAACAGTCACAGTGACTGATGGGGTAGAGGTGTGGTT  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTACAAACAACAGTCACAGTGACTGATGGGGTAGAGGTGTGGTT  350

seq1  AGTAGGAGAGCTTTTGCTGAACATACCCTGGTTCAATATCTA-CCCCGTC  372
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTAGGAGAGCTTTTGCTGAACATACCCTGGTTCAATATCTACCCCCGTC  400

seq1  AAACCAAAAACCTTTTGAAATGTTTCCAATTGATGTTTATTTACATCATA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAACCTTTTGAAATGTTTCCAATTGATGTTTATTTACATCATA  450

seq1  AATGCTATCCATGATCTCTCTCTGTCTCTCTCTGTCTCTATGTCTCTGTC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCCATGATCTCTCTCTGTCTCTCTCTGTCTCTATGTCTCTGTC  500

seq1  TCTCCCTCTGTCTCTCTCTCTCTCTCTCTCACACACACACACACACTATA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGTCTCTCTCTCTCTCTCTCTCACACACACACACACACTATA  550

seq1  TATATAGCATGTATAATATCACATGTATAATATATACCATAGTTATTTAC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCATGTATAATATCACATGTATAATATATACCATAGTTATTTAC  600

seq1  CACTAATATACATTGTAATTTACTAATATAAATTAAGAAGTAACATGTAA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATATACATTGTAATTTACTAATATAAATTAAGAAGTAACATGTAA  650

seq1  TGATCCACTCACTGTATGTTGTGTGTCATCATTTTTATCAGTTTTCTGTT  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACTCACTGTATGTTGTGTGTCATCATTTTTATCAGTTTTCTGTT  700

seq1  TTTTCCTAAGAGGGAATTTCACTATATATTCAGGCTGCCACTGCATTTGC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAGAGGGAATTTCACTATATATTCAGGCTGCCACTGCATTTGC  750

seq1  TATGTAGCTATGCTGACATCCAATGTGTCACTCTCTTGCCTCAGGCTCCC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTATGCTGACATCCAATGTGTCACTCTCTTGCCTCAGGCTCCC  800

seq1  GAGTACAGGTGTATGCCACCATTCCTGGCTGCTTTGCTTTTAAAATCAGT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGGTGTATGCCACCATTCCTGGCTGCTTTGCTTTTAAAATCAGT  850

seq1  TTTGTTTTAACTGACACTTTTATTATGAAAAATGCTATGATGAAATCGGA  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAACTGACACTTTTATTATGAAAAATGCTATGATGAAATCGGA  900

seq1  TTATTTGCACATATTTTATTTATTTATGTTTATGTATGTTTCTGTGTTGT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCACATATTTTATTTATTTATGTTTATGTATGTTTCTGTGTTGT  950

seq1  ACATACATTATGATGTTGTTTCCCTAAATTTTTCTCAGCCTGTTTATCAT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTATGATGTTGTTTCCCTAAATTTTTCTCAGCCTGTTTATCAT  1000

seq1  TTGTATAAAGGAGGGCTACTAATTTTTTCAGTTAATTTTGTATTCGGCCA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAGGAGGGCTACTAATTTTTTCAGTTAATTTTGTATTCGGCCA  1050

seq1  CTTTGCAGAAGGTGTTTACGCGTGATAGGAATTC  1056
      ||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGAAGGTGTTTACGCGTGATAGGAATTC  1084


| Home | SequenceCutter | Blast | Download |