BAC Information

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BAC

Clone NameB6Ng01-294J22
Chromosome9 (Build37)
Map Location 36,762,677 - 36,901,405
singlet/doubletdoublet
Overlap genePknox2, LOC100042545
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1
Downstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J22.bB6Ng01-294J22.g
ACCGA090702GA090703
length1,1281,016
definitionB6Ng01-294J22.b B6Ng01-294J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,900,285 - 36,901,405)(36,762,677 - 36,763,683)
sequence
gaattcctgatgtggcttcccatctgagattccctaaataaatcctgccc
cctaacccctgtcttaaatgtggagcagataggggagtttttgttttgtt
tttgtttattggttggttagagtttttgaggcagggtttcatgatgtggt
caaagctggcctagaacttgtggcaatcctcctgcctccaaagtgctgac
cttaaagacttaacactaccacttccagccatgctctgtcctaactttgg
ctcctactttgagccagctctaaaatccagcttttcttttgctgtgactg
acttctaggctggcaggcgctgacccttgctgcagatgctcccgctgccc
tcatgaccctgggttaggccttattgctctgttggtggcaaaatgctgta
ttttgcctgctctgcttcccttgatgaatcctcagattgtcactttctct
tgtcacgcggctgagaatcctatgcaaagtaaagccagatgccagtgggg
acttgttagcacaaagacatgcatttgttctgcccggggctgagcctcct
gggtaggctgtatttacttttcctttggagccagacccctctccaaaggg
gactttggggcctcttcacttctaaccaaatgaggaatgtccagggtcat
cctgcagctgacctttctcctgtgtcacatggctttgttccccaaagcag
aagcaatttcttccctccccctccgtgctggttcacagtttctcttgctt
gtagccaaacagtgctccagcaagaatattttacttgcaccaaagacagt
gttttaacttttcaaaatgtatcagatatcattgttgcattttcacagtg
tctcttacagccaaggcaagcataaacattttgagttgaggccgatagat
ttaattgatactttgtccaagtttcttgggattcttagaacttttttgac
ttaatatacaggtagtggaaatctttcccttcttgacttagaactctgcc
aatgtgaccacctcaaatctttgctacaatttatacacgttcccagaata
ttacaccaccacaccctatctagataaaattctagagcttgcagcaccgg
aaactttatggcttgtctctcttgttca
gaattctgttttattttactgagacagggtctcccataacccaggttagc
ttaaaatttgttatgtttctgaggctcaccttgagtgtatgatctttctg
tttctacttcccaaatactgggatcgcagacgtgtctactctgtcttggc
ctaagagatggctcttaatgcgaatgttgtgatctttgccagaagtagaa
aaataaaaataaaaacaaaaacaaaaccataatacaataaactgctttaa
ttatgtttatgagtcttttttgtatgaggggtttgattgcatgtatgtat
gtatgtataccatgagtcttttttatatgaggggtttgattgcatgtatg
tatgtatgtatgtatgcataccatgtgcatgtctagtgctcttgagttca
gaagatggcagtgcgtctctcctgaaactggagttaaagatggtggtgac
ctgccacgtgggtgctggaactgaacccaggttctctgcaagaacatcaa
gtgctattaaccaccgagccatctctccagcccctgtttatgcgtctttt
tgttagtaacgaatttgattagataactttaaaaggcagggaaaaaaggc
tgaatatttttcatttggacagtcataattatccccttttcatgcaagtc
aagaggtaactcttcaggtagttttaatggctaactgaatggctctgaaa
atttggcttctattggccacttgaagatgaagtttttaacagacaatgaa
cagatgtctgctcttggttagagcaacaaccttagaaaaatcgttttcat
agcatgtcatagggtttggaaggtatttcaaaggtctacaatttttacac
ccaactatacctattcctctcagtataatactctgactttttctgtttaa
cgtttcatgtaaagaaatggcccaaatatctctaatatttttttgaaaac
cattattacagaccttaaattattttatgttatattttcttttagtaaag
taagactcctagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36900285_36901405
seq2: B6Ng01-294J22.b_49_1176 (reverse)

seq1  TGAACAAGAG----CAGCCTTTAAGTTTCCGGTGCCTGCAAGCCTCTTAG  46
      ||||||||||     |||| | |||||||||||| ||||||| ||| |||
seq2  TGAACAAGAGAGACAAGCCATAAAGTTTCCGGTG-CTGCAAG-CTC-TAG  47

seq1  ATTTTTATCTAGATA-GGTGTG--TGTGTATTATTCTGGGAACGTGTTAT  93
      | ||||||||||||| ||||||   ||||| ||||||||||||||| |||
seq2  AATTTTATCTAGATAGGGTGTGGTGGTGTAATATTCTGGGAACGTG-TAT  96

seq1  AAATTGTAGCAAGATTTTGAGGTTGTCCACATTTGCAGAGTTCTAAGTC-  142
      ||||||||||||   |||||||| || |||||| ||||||||||||||| 
seq2  AAATTGTAGCAAAGATTTGAGGTGGT-CACATTGGCAGAGTTCTAAGTCA  145

seq1  AGAA-GGAAAGATTTCCACTACCTGTATATTTAGTC-AAAAAGTTCTAAG  190
      |||| |||||||||||||||||||||||||| |||| |||||||||||||
seq2  AGAAGGGAAAGATTTCCACTACCTGTATATTAAGTCAAAAAAGTTCTAAG  195

seq1  -ATTCCAAGAAACTTTGGACAAAGTATCAA-TAAATCTATCGGCCTCAAC  238
       || ||||||||| |||||||||||||||| |||||||||||||||||||
seq2  AATCCCAAGAAAC-TTGGACAAAGTATCAATTAAATCTATCGGCCTCAAC  244

seq1  TC-AAATGTTTATGCTTGCCTTGGCTGTAAGAGACACTGTGAAAATGCAA  287
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGTTTATGCTTGCCTTGGCTGTAAGAGACACTGTGAAAATGCAA  294

seq1  CAATGATATTCTGATACATTTTGAAAAGTTAAAACACTGTCTTTGGTGCA  337
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATA-TCTGATACATTTTGAAAAGTTAAAACACTGTCTTTGGTGCA  343

seq1  AGT-AAATATTCTTGCTGGAGCACTGTTTGGCTACAAGCAAGAGAAACTG  386
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATTCTTGCTGGAGCACTGTTTGGCTACAAGCAAGAGAAACTG  393

seq1  TGAACCAGCACGGAGGGGGAGGGAAGAAATTGCTTCTGCTTTGGGGAACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGCACGGAGGGGGAGGGAAGAAATTGCTTCTGCTTTGGGGAACA  443

seq1  AAGCCATGTGACACAGGAGAAAGGTCAGCTGCAGGATGACCCTGGACATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTGACACAGGAGAAAGGTCAGCTGCAGGATGACCCTGGACATT  493

seq1  CCTCATTTGGTTAGAAGTGAAGAGGCCCCAAAGTCCCCTTTGGAGAGGGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTGGTTAGAAGTGAAGAGGCCCCAAAGTCCCCTTTGGAGAGGGG  543

seq1  TCTGGCTCCAAAGGAAAAGTAAATACAGCCTACCCAGGAGGCTCAGCCCC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCAAAGGAAAAGTAAATACAGCCTACCCAGGAGGCTCAGCCCC  593

seq1  GGGCAGAACAAATGCATGTCTTTGTGCTAACAAGTCCCCACTGGCATCTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAACAAATGCATGTCTTTGTGCTAACAAGTCCCCACTGGCATCTG  643

seq1  GCTTTACTTTGCATAGGATTCTCAGCCGCGTGACAAGAGAAAGTGACAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTTGCATAGGATTCTCAGCCGCGTGACAAGAGAAAGTGACAAT  693

seq1  CTGAGGATTCATCAAGGGAAGCAGAGCAGGCAAAATACAGCATTTTGCCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATTCATCAAGGGAAGCAGAGCAGGCAAAATACAGCATTTTGCCA  743

seq1  CCAACAGAGCAATAAGGCCTAACCCAGGGTCATGAGGGCAGCGGGAGCAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAGCAATAAGGCCTAACCCAGGGTCATGAGGGCAGCGGGAGCAT  793

seq1  CTGCAGCAAGGGTCAGCGCCTGCCAGCCTAGAAGTCAGTCACAGCAAAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAAGGGTCAGCGCCTGCCAGCCTAGAAGTCAGTCACAGCAAAAG  843

seq1  AAAAGCTGGATTTTAGAGCTGGCTCAAAGTAGGAGCCAAAGTTAGGACAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGGATTTTAGAGCTGGCTCAAAGTAGGAGCCAAAGTTAGGACAG  893

seq1  AGCATGGCTGGAAGTGGTAGTGTTAAGTCTTTAAGGTCAGCACTTTGGAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTGGAAGTGGTAGTGTTAAGTCTTTAAGGTCAGCACTTTGGAG  943

seq1  GCAGGAGGATTGCCACAAGTTCTAGGCCAGCTTTGACCACATCATGAAAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGATTGCCACAAGTTCTAGGCCAGCTTTGACCACATCATGAAAC  993

seq1  CCTGCCTCAAAAACTCTAACCAACCAATAAACAAAAACAAAACAAAAACT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAAAAACTCTAACCAACCAATAAACAAAAACAAAACAAAAACT  1043

seq1  CCCCTATCTGCTCCACATTTAAGACAGGGGTTAGGGGGCAGGATTTATTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATCTGCTCCACATTTAAGACAGGGGTTAGGGGGCAGGATTTATTT  1093

seq1  AGGGAATCTCAGATGGGAAGCCACATCAGGAATTC  1121
      |||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTCAGATGGGAAGCCACATCAGGAATTC  1128

seq1: chr9_36762677_36763683
seq2: B6Ng01-294J22.g_68_1083

seq1  GAATTCTGTTTTATTTTACTGAGACAGGGTCTCCCATAACCCAGGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTATTTTACTGAGACAGGGTCTCCCATAACCCAGGTTAGC  50

seq1  TTAAAATTTGTTATGTTTCTGAGGCTCACCTTGAGTGTATGATCTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTGTTATGTTTCTGAGGCTCACCTTGAGTGTATGATCTTTCTG  100

seq1  TTTCTACTTCCCAAATACTGGGATCGCAGACGTGTCTACTCTGTCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTTCCCAAATACTGGGATCGCAGACGTGTCTACTCTGTCTTGGC  150

seq1  CTAAGAGATGGCTCTTAATGCGAATGTTGTGATCTTTGCCAGAAGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGATGGCTCTTAATGCGAATGTTGTGATCTTTGCCAGAAGTAGAA  200

seq1  AAATAAAAATAAAAACAAAAACAAAACCATAATACAATAAACTGCTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAAACAAAAACAAAACCATAATACAATAAACTGCTTTAA  250

seq1  TTATGTTTATGAGTCTTTTTTGTATGAGGGGTTTGATTGCATGTATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTATGAGTCTTTTTTGTATGAGGGGTTTGATTGCATGTATGTAT  300

seq1  GTATGTATACCATGAGTCTTTTTTATATGAGGGGTTTGATTGCATGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATACCATGAGTCTTTTTTATATGAGGGGTTTGATTGCATGTATG  350

seq1  TATGTATGTATGTATGCATACCATGTGCATGTCTAGTGCTCTTGAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTATGCATACCATGTGCATGTCTAGTGCTCTTGAGTTCA  400

seq1  GAAGATGGCAGTGCGTCTCTCCTGAAACTGGAGTTAAAGATGGTGGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGCAGTGCGTCTCTCCTGAAACTGGAGTTAAAGATGGTGGTGAC  450

seq1  CTGCCACGTGGGTGCTGGAACTGAACCCAGGTTCTCTGCAAGAACATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACGTGGGTGCTGGAACTGAACCCAGGTTCTCTGCAAGAACATCAA  500

seq1  GTGCTATTAACCACCGAGCCATCTCTCCAGCCCCTGTTTATGCGTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTAACCACCGAGCCATCTCTCCAGCCCCTGTTTATGCGTCTTTT  550

seq1  TGTTAGTAACGAATTTGATTAGATAACTTTAAAAGGCAGGGAAAAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTAACGAATTTGATTAGATAACTTTAAAAGGCAGGGAAAAAAGGC  600

seq1  TGAATATTTTTCATTTGGACAGTCATAATTATCCCCTTTTCATGCAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTTTCATTTGGACAGTCATAATTATCCCCTTTTCATGCAAGTC  650

seq1  AAGAGGTAACTCTTCAGGTAGTTTTAATGGCTAACTGAATGGCTCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAACTCTTCAGGTAGTTTTAATGGCTAACTGAATGGCTCTGAAA  700

seq1  ATTTGGCTTCTATTGGCCACTTGAAGATGAAGTTTTTAACAGACAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTCTATTGGCCACTTGAAGATGAAGTTTTTAACAGACAATGAA  750

seq1  CAGATGTCTGCTCTTGGTTAGAGCAACAACCTTAGAAAAATCGTTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCTGCTCTTGGTTAGAGCAACAACCTTAGAAAAATCGTTTTCAT  800

seq1  AGCATGTCATAGGGTTTGGAAGGTA-TTCCAAGGTCTACAA-TTTTACA-  847
      ||||||||||||||||||||||||| ||| ||||||||||| ||||||| 
seq2  AGCATGTCATAGGGTTTGGAAGGTATTTCAAAGGTCTACAATTTTTACAC  850

seq1  CCAACTATACCTATTCCTCTCAGTATAATACTCTGAC-TTTTCTGTTTAA  896
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAACTATACCTATTCCTCTCAGTATAATACTCTGACTTTTTCTGTTTAA  900

seq1  CGTTTCATGTAAAGAAATGGCCC-AATATCTCT-ATATTTTTTTGAAAAC  944
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CGTTTCATGTAAAGAAATGGCCCAAATATCTCTAATATTTTTTTGAAAAC  950

seq1  CATTATTACAGAACTT-AATTATTTTATGTTATA-TTTCTTTTAGTTAAG  992
      |||||||||||| ||| ||||||||||||||||| ||||||||||| |||
seq2  CATTATTACAGACCTTAAATTATTTTATGTTATATTTTCTTTTAGTAAAG  1000

seq1  T-AGACTCCTAGAATG  1007
      | ||||||||||||||
seq2  TAAGACTCCTAGAATG  1016