BAC Information

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BAC

Clone NameB6Ng01-295A14
Chromosome9 (Build37)
Map Location 33,325,098 - 33,422,511
singlet/doubletdoublet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295A14.bB6Ng01-295A14.g
ACCGA091011GA091012
length8041,161
definitionB6Ng01-295A14.b B6Ng01-295A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,421,708 - 33,422,511)(33,325,098 - 33,326,338)
sequence
gaattccccactttttccctcatttctattttagttctggtacaatactg
ttttgataactgtagctttgtagtatattataatgttaaaatgtaggatg
tactcagatttatttattgttcaaaattcttttgatttctcagagtcaac
tgtggtcccaaatcaatgttagcttttttgtttctatttctggaaaagat
gccatctggattttacataggattgcatttaatttataggttactttgga
tttaagttaatttttacttatagaataaattctactcctttttggaagct
cagtaaataaattttctcaactgaatcatcaccacaaaaaaattagagta
accccaataaaaagtgtcttaaggtcttcttattatgacattttgttggt
ttttttttctctaaagaattaagcacttttcattttcatttaatacaaaa
ccaaacagcatttatccatttaaggtgcatgtgggtagatgctaagaatt
atctggtttatatatagttttcctatacctgacagactgtgtggacagaa
gaataagatcataaatacagttatatgtcctggtgagagaatctcagagt
tcatgcgtgcacacttagacagcattaggtgctgaatgaagtacagtgca
ttgttcctaagaccatgatgaacaaaagatcaggaggaaaaatcaaacac
aagagaaaatgatgcaaccaagaaaatcaacactgattttgtagctctac
acattctacacatctctctctctctctctctctttctctctctctctctc
tctc

gaattccaacttcaatccaaaatcaccagaactatagagatggcatttac
tgagaagaggaaaaccaaaggacaaatggaacatttttgcatggtggtgg
aattgaaagtaggtcatgaatttcatttcagttacaccaagtttgaaatg
ccattcatacctttcaatgaaaatatgtaagaatttggatgtataaatca
caatctctgttgcaatcacagcagaggtaaaggttggaaatataaataca
ccaagcatatacattgacacttatctcacagatgtgaatgatgacagtgt
gcagaacaaaccacctataattatctgtgattaggctgtaactcaatttt
acaaaaaaaataaaatgtatcctgtgcctggttttaatacacactgaata
tctccagaatacaaactattatgtaaatcaaagaaagtttgcccttaatt
tcacccttttagaagtttatatgagtgacaggaaagggtcgctgttaaag
caatgcaatcatctataacagaattgtgttttcttggatctaaagcagtt
gccttcagactacttcaaaggctggaagcgaaagttgcatttttacacac
atcttacattagatactttatacattatacataatacttgtatagtgtga
aaaattttaacttcataatagaggcagttgatttcttcttattccggttt
gatattattttacaggatattcagtctccccatttctgtgcagtcctcat
cctacacccacactgacatcaggacagtgcacaaatggatatatttttag
actgaacatgggccctcataaagtagccataatgaagaggaggcttcatg
ttaacctgatatcactctgccttccctgacttccatggaagcacacacca
aaccccctgaactttcccaaatagagtttccatctgattcattggaattc
tccagggggtgggggacagatgataaaaggagacagtaatgagccccaca
atgggtattatcccagagcacatactagcctaaccttggcagagttttga
ttttcttcaatggattctttgctattaaaaaaaaatgcaaatttagcatt
cctactaccttcatggagcacattgattgacactctcatcagaacctgtc
tccagtgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33421708_33422511
seq2: B6Ng01-295A14.b_47_850 (reverse)

seq1  GAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGATGTGTAGA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGATGTGTAGA  50

seq1  ATGTGTAGAGCTACAAAATCAGTGTTGATTTTCTTGGTTGCATCATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGAGCTACAAAATCAGTGTTGATTTTCTTGGTTGCATCATTTTC  100

seq1  TCTTGTGTTTGATTTTTCCTCCTGATCTTTTGTTCATCATGGTCTTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTTTGATTTTTCCTCCTGATCTTTTGTTCATCATGGTCTTAGGA  150

seq1  ACAATGCACTGTACTTCATTCAGCACCTAATGCTGTCTAAGTGTGCACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCACTGTACTTCATTCAGCACCTAATGCTGTCTAAGTGTGCACGC  200

seq1  ATGAACTCTGAGATTCTCTCACCAGGACATATAACTGTATTTATGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTGAGATTCTCTCACCAGGACATATAACTGTATTTATGATCTT  250

seq1  ATTCTTCTGTCCACACAGTCTGTCAGGTATAGGAAAACTATATATAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGTCCACACAGTCTGTCAGGTATAGGAAAACTATATATAAACC  300

seq1  AGATAATTCTTAGCATCTACCCACATGCACCTTAAATGGATAAATGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCTTAGCATCTACCCACATGCACCTTAAATGGATAAATGCTGT  350

seq1  TTGGTTTTGTATTAAATGAAAATGAAAAGTGCTTAATTCTTTAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTATTAAATGAAAATGAAAAGTGCTTAATTCTTTAGAGAAAA  400

seq1  AAAAACCAACAAAATGTCATAATAAGAAGACCTTAAGACACTTTTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAACAAAATGTCATAATAAGAAGACCTTAAGACACTTTTTATTG  450

seq1  GGGTTACTCTAATTTTTTTGTGGTGATGATTCAGTTGAGAAAATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTCTAATTTTTTTGTGGTGATGATTCAGTTGAGAAAATTTATTT  500

seq1  ACTGAGCTTCCAAAAAGGAGTAGAATTTATTCTATAAGTAAAAATTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTTCCAAAAAGGAGTAGAATTTATTCTATAAGTAAAAATTAACT  550

seq1  TAAATCCAAAGTAACCTATAAATTAAATGCAATCCTATGTAAAATCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAAAGTAACCTATAAATTAAATGCAATCCTATGTAAAATCCAGA  600

seq1  TGGCATCTTTTCCAGAAATAGAAACAAAAAAGCTAACATTGATTTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTTTCCAGAAATAGAAACAAAAAAGCTAACATTGATTTGGGAC  650

seq1  CACAGTTGACTCTGAGAAATCAAAAGAATTTTGAACAATAAATAAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGACTCTGAGAAATCAAAAGAATTTTGAACAATAAATAAATCTG  700

seq1  AGTACATCCTACATTTTAACATTATAATATACTACAAAGCTACAGTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCCTACATTTTAACATTATAATATACTACAAAGCTACAGTTATC  750

seq1  AAAACAGTATTGTACCAGAACTAAAATAGAAATGAGGGAAAAAGTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTATTGTACCAGAACTAAAATAGAAATGAGGGAAAAAGTGGGGA  800

seq1  ATTC  804
      ||||
seq2  ATTC  804


seq1: chr9_33325098_33326338
seq2: B6Ng01-295A14.g_70_1230

seq1  GAATTCCAACTTCAATCCAAAATCACCAGAACTATAGAGATGGCATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTCAATCCAAAATCACCAGAACTATAGAGATGGCATTTAC  50

seq1  TGAGAAGAGGAAAACCAAAGGACAAATGGAACATTTTTGCATGGTGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGGAAAACCAAAGGACAAATGGAACATTTTTGCATGGTGGTGG  100

seq1  AATTGAAAGTAGGTCATGAATTTCATTTCAGTTACACCAAGTTTGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAGTAGGTCATGAATTTCATTTCAGTTACACCAAGTTTGAAATG  150

seq1  CCATTCATACCTTTCAATGAAAATATGTAAGAATTTGGATGTATAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATACCTTTCAATGAAAATATGTAAGAATTTGGATGTATAAATCA  200

seq1  CAATCTCTGTTGCAATCACAGCAGAGGTAAAGGTTGGAAATATAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTGTTGCAATCACAGCAGAGGTAAAGGTTGGAAATATAAATACA  250

seq1  CCAAGCATATACATTGACACTTATCTCACAGATGTGAATGATGACAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATATACATTGACACTTATCTCACAGATGTGAATGATGACAGTGT  300

seq1  GCAGAACAAACCACCTATAATTATCTGTGATTAGGCTGTAACTCAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAAACCACCTATAATTATCTGTGATTAGGCTGTAACTCAATTTT  350

seq1  ACAAAAAAAATAAAATGTATCCTGTGCCTGGTTTTAATACACACTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAATAAAATGTATCCTGTGCCTGGTTTTAATACACACTGAATA  400

seq1  TCTCCAGAATACAAACTATTATGTAAATCAAAGAAAGTTTGCCCTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAATACAAACTATTATGTAAATCAAAGAAAGTTTGCCCTTAATT  450

seq1  TCACCCTTTTAGAAGTTTATATGAGTGACAGGAAAGGGTCGCTGTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTTTAGAAGTTTATATGAGTGACAGGAAAGGGTCGCTGTTAAAG  500

seq1  CAATGCAATCATCTATAACAGAATTGTGTTTTCTTGGATCTAAAGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAATCATCTATAACAGAATTGTGTTTTCTTGGATCTAAAGCAGTT  550

seq1  GCCTTCAGACTACTTCAAAGGCTGGAAGCGAAAGTTGCATTTTTACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGACTACTTCAAAGGCTGGAAGCGAAAGTTGCATTTTTACACAC  600

seq1  ATCTTACATTAGATACTTTATACATTATACATAATACTTGTATAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACATTAGATACTTTATACATTATACATAATACTTGTATAGTGTGA  650

seq1  AAAATTTTAACTTCATAATAGAGGCAGTTGATTTCTTCTTATTCCGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAACTTCATAATAGAGGCAGTTGATTTCTTCTTATTCCGGTTT  700

seq1  GATATTATTTTACAGGATATTCAGTCTCCCCATTTCTGTGCAGTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATTTTACAGGATATTCAGTCTCCCCATTTCTGTGCAGTCCTCAT  750

seq1  CCTACACCCACACTGACATCAGGACAGTGCACAAATGGATATATTTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACCCACACTGACATCAGGACAGTGCACAAATGGATATATTTTTAG  800

seq1  ACTGAACATGGGCCCTCATAAAGTAGCCATAATGAAGAGGAGGCTTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATGGGCCCTCATAAAGTAGCCATAATGAAGAGGAGGCTTCATG  850

seq1  TTAACCTGATATCACTCTGCCTTCCCTGACTTCCATGGAAGCACACACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGATATCACTCTGCCTTCCCTGACTTCCATGGAAGCACACACCA  900

seq1  AACCCCCTGAACTTT-CCAAATAGAGTTTCCATCTGATTCATTGGAATTC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCCCCTGAACTTTCCCAAATAGAGTTTCCATCTGATTCATTGGAATTC  950

seq1  TCCAGGGG--TGGGGACAGATGAT-AAAGGAGACAAGTAATGAGCCCCAC  996
      ||||||||   ||||||||||||| ||||||||| |||||||||||||||
seq2  TCCAGGGGGTGGGGGACAGATGATAAAAGGAGAC-AGTAATGAGCCCCAC  999

seq1  AATGGGTATTAT-CCAGAGCACATACTAGCCTAACCTT-GCAGAGTTTTG  1044
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  AATGGGTATTATCCCAGAGCACATACTAGCCTAACCTTGGCAGAGTTTTG  1049

seq1  ATTTTCTTCCATGGATTTCTTTTGCCTAATTAAAAAAAAAATGGCAAATT  1094
      ||||||||| |||||||   |||||   ||||||||||||   |||||||
seq2  ATTTTCTTCAATGGATT--CTTTGC--TATTAAAAAAAAA--TGCAAATT  1093

seq1  TAGCATTTCTACTACCTTCAT-GAGCACAAATGAAATGAACACTTCTCAT  1143
      ||||||| ||||||||||||| |||||| | ||  ||  |||| ||||||
seq2  TAGCATTCCTACTACCTTCATGGAGCAC-ATTG--ATTGACAC-TCTCAT  1139

seq1  C-GAAACTGTTCTCCAAGTTGAATGCAGTTGTTCTATGGTTTTATTTCTT  1192
      | ||| ||| ||||| |||   ||                          
seq2  CAGAACCTG-TCTCC-AGTGATAT--------------------------  1161

seq1  TTCCTATCCCACGACTCACCCCTTTCCAGCCAGCACTATCCAGTGATAT  1241
                                                       
seq2  -------------------------------------------------  1161


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