BAC Information

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BAC

Clone NameB6Ng01-295B17
Chromosome9 (Build37)
Map Location 101,992,321 - 102,109,136
singlet/doubletdoublet
Overlap geneEphb1
Upstream geneMsl2l1, 3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295B17.bB6Ng01-295B17.g
ACCGA091063GA091064
length1851,188
definitionB6Ng01-295B17.b B6Ng01-295B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,108,952 - 102,109,136)(101,992,321 - 101,993,485)
sequence
ttctgtcttatcaatcttggtttaagaaatgagtgcactgagctgggcaa
gggagtggttagaacagctagaatcttgtcccgttaacagaggcagaaaa
gttggtttgaagaattgagtgtgcatgtgtatatatatgagtaagtggtc
atgtgaatgtataagcatgttggtgtccgtgtgtg
gaattccccattattgcctaaagtccttctcaggttccctacctggaaaa
ctgagaactacatttcccagaatgccaggctgaaaggcatggattagagc
ctgcaaatcaaaaagttcctgcaagaaacagagggtaggttgggttatct
ggtcagttttagagagtatcaggaggttcagtaatagagtggctatgagc
atcactgggaggggcttttgattactgggtcttcaaagttagtgactaac
cttagcaaacctagtagcctagcctgagctctggctctctgctcttagag
ttgtacaaagggcctgaggatgttgctcagtgtttaagcatcattgcatt
gcctaggatattttcaattacttaattttgttttatgtgtgttagtgttt
tgcctgtatgtaatctgtacatcacagtgcatgtcaggggcctacagaag
ccataagagggcattagagtccttggcactagaattacagatagttgtaa
gccaccaggtaagtgctggaaatagaaccccaagtcctctggaagagcag
ccagtgctcttaactacaaagccctgtcttggccatctctttagtcccat
tgctagcatttttggaccctctgggtttgatcccagacactagaactttt
gtgagcatttaaattcttacccagaaaaaaaaatccggttcaacttgaaa
taacctagaatattttattaaaatccattttgctctctcccccaccccta
gagacttaacaagcagggtttcttctaaaaatagatctttaaacatttcc
ccagactggggcctcactttctgagagtttggaagtagtacgattacaaa
atgttgcaaagactctattgttatggtgagaatacagaaggggtacaaag
gaacccatccgtacccccccccccttcacaggtttccacccccttggtct
gcaaggtagaaaatggcctggaggtttgggaataaaagaatacctgtgtg
aacagttgtcttctgaatacacaggaggtaatacgtcagatgctgtgtta
gaaaatattcagcacttggtccttaaagaccaaccaactaaccctctcct
caacagtaatgtagcaactactgcagggcccaggattttgttcaggaacg
gatatgctcaggtccagcctacacctgatggttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_102108952_102109136
seq2: B6Ng01-295B17.b_52_236 (reverse)

seq1  CACACACGGACACCAACATGCTTATACATTCACATGACCACTTACTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGGACACCAACATGCTTATACATTCACATGACCACTTACTCATA  50

seq1  TATATACACATGCACACTCAATTCTTCAAACCAACTTTTCTGCCTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACATGCACACTCAATTCTTCAAACCAACTTTTCTGCCTCTGTT  100

seq1  AACGGGACAAGATTCTAGCTGTTCTAACCACTCCCTTGCCCAGCTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGACAAGATTCTAGCTGTTCTAACCACTCCCTTGCCCAGCTCAGTG  150

seq1  CACTCATTTCTTAAACCAAGATTGATAAGACAGAA  185
      |||||||||||||||||||||||||||||||||||
seq2  CACTCATTTCTTAAACCAAGATTGATAAGACAGAA  185

seq1: chr9_101992321_101993485
seq2: B6Ng01-295B17.g_68_1255

seq1  GAATTCCCCATTATTGCCTAAAGTCCTTCTCAGGTTCCCTACCTGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATTATTGCCTAAAGTCCTTCTCAGGTTCCCTACCTGGAAAA  50

seq1  CTGAGAACTACATTTCCCAGAATGCCAGGCTGAAAGGCATGGATTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTACATTTCCCAGAATGCCAGGCTGAAAGGCATGGATTAGAGC  100

seq1  CTGCAAATCAAAAAGTTCCTGCAAGAAACAGAGGGTAGGTTGGGTTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCAAAAAGTTCCTGCAAGAAACAGAGGGTAGGTTGGGTTATCT  150

seq1  GGTCAGTTTTAGAGAGTATCAGGAGGTTCAGTAATAGAGTGGCTATGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTTTAGAGAGTATCAGGAGGTTCAGTAATAGAGTGGCTATGAGC  200

seq1  ATCACTGGGAGGGGCTTTTGATTACTGGGTCTTCAAAGTTAGTGACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGGAGGGGCTTTTGATTACTGGGTCTTCAAAGTTAGTGACTAAC  250

seq1  CTTAGCAAACCTAGTAGCCTAGCCTGAGCTCTGGCTCTCTGCTCTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAACCTAGTAGCCTAGCCTGAGCTCTGGCTCTCTGCTCTTAGAG  300

seq1  TTGTACAAAGGGCCTGAGGATGTTGCTCAGTGTTTAAGCATCATTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAAGGGCCTGAGGATGTTGCTCAGTGTTTAAGCATCATTGCATT  350

seq1  GCCTAGGATATTTTCAATTACTTAATTTTGTTTTATGTGTGTTAGTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGATATTTTCAATTACTTAATTTTGTTTTATGTGTGTTAGTGTTT  400

seq1  TGCCTGTATGTAATCTGTACATCACAGTGCATGTCAGGGGCCTACAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTATGTAATCTGTACATCACAGTGCATGTCAGGGGCCTACAGAAG  450

seq1  CCATAAGAGGGCATTAGAGTCCTTGGCACTAGAATTACAGATAGTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAGGGCATTAGAGTCCTTGGCACTAGAATTACAGATAGTTGTAA  500

seq1  GCCACCAGGTAAGTGCTGGAAATAGAACCCCAAGTCCTCTGGAAGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGTAAGTGCTGGAAATAGAACCCCAAGTCCTCTGGAAGAGCAG  550

seq1  CCAGTGCTCTTAACTACAAAGCCCTGTCTTGGCCATCTCTTTAGTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTCTTAACTACAAAGCCCTGTCTTGGCCATCTCTTTAGTCCCAT  600

seq1  TGCTAGCATTTTTGGACCCTCTGGGTTTGATCCCAGACACTAGAACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCATTTTTGGACCCTCTGGGTTTGATCCCAGACACTAGAACTTTT  650

seq1  GTGAGCATTTAAATTCTTACCCAGAAAAAAAAATCCGGTTCAACTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATTTAAATTCTTACCCAGAAAAAAAAATCCGGTTCAACTTGAAA  700

seq1  TAACCTAGAATATTTTATTAAAATCCATTTTGCTCTCTCCCCCACCCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGAATATTTTATTAAAATCCATTTTGCTCTCTCCCCCACCCCTA  750

seq1  GAGACTTAACAAGCAGGGTTTCTTCTAAAAATAGATCTTTAAACATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAACAAGCAGGGTTTCTTCTAAAAATAGATCTTTAAACATTTCC  800

seq1  CCAGACTGGGGCCTCACTTTCTGAGAGTTTGGAAGTAGTACGATTACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGGGGCCTCACTTTCTGAGAGTTTGGAAGTAGTACGATTACAAA  850

seq1  ATGTTGCAAAGACTCTATTGTTATGGTGAGAATACAGAAGGGGTACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAAAGACTCTATTGTTATGGTGAGAATACAGAAGGGGTACAAAG  900

seq1  GAACCCATCCGTA-CCCCCCCCCCTTCACAGG-TTCCACCCCCTTGGTCT  948
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GAACCCATCCGTACCCCCCCCCCCTTCACAGGTTTCCACCCCCTTGGTCT  950

seq1  GC-AGGTAG-AAATGG-CTGGAGGTTT-GGAATAAAAG-ATACCTGTGTG  993
      || |||||| |||||| |||||||||| |||||||||| |||||||||||
seq2  GCAAGGTAGAAAATGGCCTGGAGGTTTGGGAATAAAAGAATACCTGTGTG  1000

seq1  AACAG-TGTC-TCTGAATACACA-GAGGTAATACGTCAGATGCTGTG-TA  1039
      ||||| |||| |||||||||||| ||||||||||||||||||||||| ||
seq2  AACAGTTGTCTTCTGAATACACAGGAGGTAATACGTCAGATGCTGTGTTA  1050

seq1  G-AAATA-TCAGCACTTGGT-CTTAAAGA-CAACACACT-ACCCTCTC--  1082
      | ||||| |||||||||||| |||||||| ||||  ||| ||||||||  
seq2  GAAAATATTCAGCACTTGGTCCTTAAAGACCAACCAACTAACCCTCTCCT  1100

seq1  --ACAGTAATGTAGCAAATTACTGCCAGGGGCCAGGA-TTTGTTCAGGGA  1129
        ||||||||||||| || ||||| ||||| |||||| |||||||||| |
seq2  CAACAGTAATGTAGC-AACTACTG-CAGGGCCCAGGATTTTGTTCAGGAA  1148

seq1  CAGGATTATGCTCAGGGCCAG-CTACAC-----TGTTGTGTG  1165
      | ||| |||||||||| |||| ||||||      ||||||||
seq2  C-GGA-TATGCTCAGGTCCAGCCTACACCTGATGGTTGTGTG  1188