BAC Information

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BAC

Clone NameB6Ng01-295M16
Chromosome9 (Build37)
Map Location 19,327,001 - 19,444,351
singlet/doubletdoublet
Overlap geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851
Downstream geneEG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295M16.bB6Ng01-295M16.g
ACCGA091570GA091571
length950656
definitionB6Ng01-295M16.b B6Ng01-295M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,327,001 - 19,327,745)(19,443,789 - 19,444,351)
sequence
tgaagtttgattgcccccagggcaggtgctgggctacagggaagtgccac
actgctccaggggtggaaaagcctcagtggttcagggtgttcctgagtct
gtgaggagaccacagccatggagttcacagacgatctggtgagagtagtg
gaagagcagagaatggagttgcaggggggagggcacagcttagtacagag
tctagtgggggggggagctctagctgatctcatgtggactggagtgattg
tccttggcttggagacagcaggttggctttctatgggatattaggctgag
gttctgtaggcgaaggccttcttcatggctctccagggtagattttgatg
aaaattgacagtccatggttcttaacagtgtattgtcatggcagaaaata
gatgggtaaaaccatatcccctttctcagagtggtctttattactgggag
gaatgtctgagaaggaaagcttattggctaatccctctgggcctctaggt
acctcattagcatagggaattctgttttaccccacatgaacatagaacat
gtttcttttatgtgagaggcatggcaatgtttcaagtcggtagtctggca
gggagctgggagtcaactaagcctcaggggtgtgcccaacatgtctccat
gtctttgcctgctctaccttaccaaacttcctggtattattgtctatccc
acaacttgctagggagatgtcttgtgctctttgctatacgagaagaggca
aaaccaactgggtggcctcaagctatgccaccaaaaatattaaatgtata
ggcccttagtgacttggcttataatcccctaccttgatggcgacatggtt
cagcctttgcaagtatataggggagaagctagatatgtttttaatgaaca
ggtgggatctttgtgttctctctctctctctctctctctccctccctccc

gaattctcaaaagaggacacacaaatggctgagaagcacttaaagaattt
tcaacattgttagtcaacagggaaatgtaaatcaaaactactttaagatt
tcaccattcaccagctagaatgtccaaatcaataaaacaaatgaatgctt
atgctggtgaggttgtgagttaggggaagacccaacctttgctcaggggg
aatgcaagcatgtatagcaatgaaggatgtggtggttcctcaggaagcta
ggagtagatctatcttgagatccatctatagcacacttgggtatataccc
aaaagatgcttcatcctactacagagacacttgttcaaccatgttcactg
ctgctctagtcataatagccataaactgaaaacagaactggaagggaaag
tgtacataagtccaatccctaaaccagacgctatcatcaacaagtaactg
catacatatgaaaattagttttctccaatcgtgtctcactgaaaaaacaa
actactcttaagggtaggccttagcagtagatgaccaaacactaaatgag
ggtggggggggaggagaaaaaagttaacaattattaggatagagagagag
attgcaaaatattaagaactctataacaatgcttaaatagtgagcaaact
tgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19327001_19327745
seq2: B6Ng01-295M16.b_263_1009

seq1  AGTGGGGGGGGGAGCTCTAGCTGATCTCATGTGGACTGGAGTGATTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGGGGGAGCTCTAGCTGATCTCATGTGGACTGGAGTGATTGTCC  50

seq1  TTGGCTTGGAGACAGCAGGTTGGCTTTCTATGGGATATTAGGCTGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGGAGACAGCAGGTTGGCTTTCTATGGGATATTAGGCTGAGGTT  100

seq1  CTGTAGGCGAAGGCCTTCTTCATGGCTCTCCAGGGTAGATTTTGATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCGAAGGCCTTCTTCATGGCTCTCCAGGGTAGATTTTGATGAAA  150

seq1  ATTGACAGTCCATGGTTCTTAACAGTGTATTGTCATGGCAGAAAATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTCCATGGTTCTTAACAGTGTATTGTCATGGCAGAAAATAGAT  200

seq1  GGGTAAAACCATATCCCCTTTCTCAGAGTGGTCTTTATTACTGGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAACCATATCCCCTTTCTCAGAGTGGTCTTTATTACTGGGAGGAA  250

seq1  TGTCTGAGAAGGAAAGCTTATTGGCTAATCCCTCTGGGCCTCTAGGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGAAGGAAAGCTTATTGGCTAATCCCTCTGGGCCTCTAGGTACC  300

seq1  TCATTAGCATAGGGAATTCTGTTTTACCCCACATGAACATAGAACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCATAGGGAATTCTGTTTTACCCCACATGAACATAGAACATGTT  350

seq1  TCTTTTATGTGAGAGGCATGGCAATGTTTCAAGTCGGTAGTCTGGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGTGAGAGGCATGGCAATGTTTCAAGTCGGTAGTCTGGCAGGG  400

seq1  AGCTGGGAGTCAACTAAGCCTCAGGGGTGTGCCCAACATGTCTCCATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAGTCAACTAAGCCTCAGGGGTGTGCCCAACATGTCTCCATGTC  450

seq1  TTTGCCTGCTCTACCTTACCAAACTTCCTGGTATTATTGTCTATCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGCTCTACCTTACCAAACTTCCTGGTATTATTGTCTATCCCACA  500

seq1  ACTTGCTAGGGAGATGTCTTGTGCTCTTTGCTATACGAGAAGAGGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAGGGAGATGTCTTGTGCTCTTTGCTATACGAGAAGAGGCAAAA  550

seq1  CCAACTGGGTGGCCTCAAGCTATGCCACCAAAAATATTAAATGTATAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGGTGGCCTCAAGCTATGCCACCAAAAATATTAAATGTATAGGC  600

seq1  CCTTAGTGACTTGGCTTATAATCCCCTACCTTGATGGCGACATGGTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGACTTGGCTTATAATCCCCTACCTTGATGGCGACATGGTTCAG  650

seq1  CC-TTGCAAGTATATAGGGGAGAAGCTAGATATGTTTTTAATGAACAGGT  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAAGTATATAGGGGAGAAGCTAGATATGTTTTTAATGAACAGGT  700

seq1  -GGATCTTTGTGTTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCC  745
       ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTTGTGTTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCC  747

seq1: chr9_19443789_19444351
seq2: B6Ng01-295M16.g_160_723 (reverse)

seq1  GTCTCAAGTTTGCTCACT-TTTAAGCATTGTTCTAGAGTTCTTAATATTT  49
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GTCTCAAGTTTGCTCACTATTTAAGCATTGTTATAGAGTTCTTAATATTT  50

seq1  TGCAATCTCTCTCTCTCTCCTAATAATTGTTAACTTTTTTCTCCTCCCCC  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCAATCTCTCTCTCTATCCTAATAATTGTTAACTTTTTTCTCCTCCCCC  100

seq1  CCCACCCTCATTTAGTGTTTGGTCATCTACTGCTAAGGCCTACCCTTAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTCATTTAGTGTTTGGTCATCTACTGCTAAGGCCTACCCTTAAG  150

seq1  AGTAGTTTGTTTTTTCAGTGAGACACGATTGGAGAAAACTAATTTTCATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTGTTTTTTCAGTGAGACACGATTGGAGAAAACTAATTTTCATA  200

seq1  TGTATGCAGTTACTTGTTGATGATAGCGTCTGGTTTAGGGATTGGACTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGTTACTTGTTGATGATAGCGTCTGGTTTAGGGATTGGACTTA  250

seq1  TGTACACTTTCCCTTCCAGTTCTGTTTTCAGTTTATGGCTATTATGACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTTTCCCTTCCAGTTCTGTTTTCAGTTTATGGCTATTATGACTA  300

seq1  GAGCAGCAGTGAACATGGTTGAACAAGTGTCTCTGTAGTAGGATGAAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGTGAACATGGTTGAACAAGTGTCTCTGTAGTAGGATGAAGCA  350

seq1  TCTTTTGGGTATATACCCAAGTGTGCTATAGATGGATCTCAAGATAGATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGTATATACCCAAGTGTGCTATAGATGGATCTCAAGATAGATC  400

seq1  TACTCCTAGCTTCCTGAGGAACCACCACATCCTTCATTGCTATACATGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTAGCTTCCTGAGGAACCACCACATCCTTCATTGCTATACATGCT  450

seq1  TGCATTCCCCCTGAGCAAAGGTTGGGTCTTCCCCTAACTCACAACCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCCCTGAGCAAAGGTTGGGTCTTCCCCTAACTCACAACCTCAC  500

seq1  CAGCATAAGCATTCATTTGTTTTATTGATTTGGACATTCTAGCTGGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAGCATTCATTTGTTTTATTGATTTGGACATTCTAGCTGGTGAA  550

seq1  TGGTGAAATCTTAA  563
      ||||||||||||||
seq2  TGGTGAAATCTTAA  564