BAC Information

Click to search

BAC

Clone NameB6Ng01-296K16
Chromosome9 (Build37)
Map Location 29,706,493 - 29,707,497
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478, Adamts15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296K16.bB6Ng01-296K16.g
ACCGA092217GA092218
length1,1571,004
definitionB6Ng01-296K16.b B6Ng01-296K16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaactgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatggaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacacttctccattgttggtg
ggattgcaagcttgtacaaccactctagaaatcagtctggcggttcctca
gaacattggacatagtactacaggaggatcccgcaatacctctcctgggc
atatatccagaagaggtcccaaccggtaagaaggacacatgttccactat
attcatagcagccttatttataataaccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattccaaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaaatcacacaatatgtactcactgataagtggatattagcccagaaac
ttagaatacccatgatacaagatacaagctgcaaaacacatgaaactcaa
gaagaacagagaccaaaaatgtggacactttgccccttcttagaattggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgtgag
gaaaggatggaccatctagagactgccatatccggggatccatcccataa
tcagcttccaaacactgacaccattgcacacactagcaagattttgctga
aaggacccagatagagctctctcttgtgagactatgcccggggcctagca
aacacagaagtggatgctcacagtcagctattggatggatcacagggccc
ccaatggaggagctagagaaagtacccaaggagctaaagggaaacctata
ggtggaacaacaatatgaacttaccagtaccccggagctcttgtccctag
ctgcatatgtatcaagatgcctagtggccatcactgagagagctcatgac
ttgcaactgtatatgctcagtacaggatgcaggccaaaatggatgggtgg
ggtataa

gaattcataattgcattataaatcctcctgaacatggacattagtgcaat
gctgtgcaaatagaaaaaccctgctgatatggaggctagggcaaatgcat
gcttaatcatttgtttacatgaaagacccctagttcaatgtgttcaaata
gcatgcacggagacatcagagatgttgatctaagtagttgtagcactcgc
caatattttcatttgctttaatattcctgtgtgccacacagttatttatt
ctgtgtcattttatgtcattgttattcatatttttctataatcatcatta
tcatcagtatcactgatgattacactaacagtaatgacatccaaatctag
gcccacaattggctgtagaaacactcagggcactcactgagtccttattg
cctgacattcagtgtctcaattctgtttacacaggaaatcctgaagctca
ccagggtttgggccctgggcatccatccatctctctcgtgttctttgcat
gctttcccaaggaggttgcttcagttccatccttgatcatgtctttatta
tatagattctagaatcagactttttatttccagtggtcattataacactc
ctctcctttcggccccttgaaaagcaggtgttgctgaggagaaaagctgt
gaaatgttatcatctggtaaggacacagccattgcaaccctaagctcata
gcaccttcagttacgtgcactagcatgcacaacacagggcctgtcaacag
tcagaggtgggagaggtgctcacagggccttacccatccctgtgggaact
aatggctattgattggcactggaggagggagagtcactattatcagctgt
gtacccacttgatggtgatcctaccaagccctagtggctgcattcacaac
caaggccacaggggtggccctccttaaacttagtcacaaaacagcaagca
tatgaatgttgtaaagaacttgtagggaggagtgtggggaggggtgaagg
gggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29706493_29707497
seq2: B6Ng01-296K16.g_72_1075

seq1  GAATTCATAATTGCATTATAAATCCTCCTGAACATGGACATTAGTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTGCATTATAAATCCTCCTGAACATGGACATTAGTGCAAT  50

seq1  GCTGTGCAAATAGAAAAACCCTGCTGATATGGAGGCTAGGGCAAATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAAATAGAAAAACCCTGCTGATATGGAGGCTAGGGCAAATGCAT  100

seq1  GCTTAATCATTTGTTTACATGAAAGACCCCTAGTTCAATGTGTTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATCATTTGTTTACATGAAAGACCCCTAGTTCAATGTGTTCAAATA  150

seq1  GCATGCACGGAGACATCAGAGATGTTGATCTAAGTAGTTGTAGCACTCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACGGAGACATCAGAGATGTTGATCTAAGTAGTTGTAGCACTCGC  200

seq1  CAATATTTTCATTTGCTTTAATATTCCTGTGTGCCACACAGTTATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTCATTTGCTTTAATATTCCTGTGTGCCACACAGTTATTTATT  250

seq1  CTGTGTCATTTTATGTCATTGTTATTCATATTTTTCTATAATCATCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATTTTATGTCATTGTTATTCATATTTTTCTATAATCATCATTA  300

seq1  TCATCAGTATCACTGATGATTACACTAACAGTAATGACATCCAAATCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTATCACTGATGATTACACTAACAGTAATGACATCCAAATCTAG  350

seq1  GCCCACAATTGGCTGTAGAAACACTCAGGGCACTCACTGAGTCCTTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAATTGGCTGTAGAAACACTCAGGGCACTCACTGAGTCCTTATTG  400

seq1  CCTGACATTCAGTGTCTCAATTCTGTTTACACAGGAAATCCTGAAGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTCAGTGTCTCAATTCTGTTTACACAGGAAATCCTGAAGCTCA  450

seq1  CCAGGGTTTGGGCCCTGGGCATCCATCCATCTCTCTCGTGTTCTTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTTGGGCCCTGGGCATCCATCCATCTCTCTCGTGTTCTTTGCAT  500

seq1  GCTTTCCCAAGGAGGTTGCTTCAGTTCCATCCTTGATCATGTCTTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCAAGGAGGTTGCTTCAGTTCCATCCTTGATCATGTCTTTATTA  550

seq1  TATAGATTCTAGAATCAGACTTTTTATTTCCAGTGGTCATTATAACACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTCTAGAATCAGACTTTTTATTTCCAGTGGTCATTATAACACTC  600

seq1  CTCTCCTTTCGGCCCCTTGAAAAGCAGGTGTTGCTGAGGAGAAAAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTCGGCCCCTTGAAAAGCAGGTGTTGCTGAGGAGAAAAGCTGT  650

seq1  GAAATGTTATCATCTGGTAAGGACACAGCCATTGCAACCCTAAGCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTATCATCTGGTAAGGACACAGCCATTGCAACCCTAAGCTCATA  700

seq1  GCACCTTCAGTTACGTGCACTAGCATGCACAACACAGGGCCTGTCAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCAGTTACGTGCACTAGCATGCACAACACAGGGCCTGTCAACAG  750

seq1  TCAGAGGTGGGAGAGGTGCTCACAGGGCCTTACCCATCCCTGTGGGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTGGGAGAGGTGCTCACAGGGCCTTACCCATCCCTGTGGGAACT  800

seq1  AATGGCTATTGATTGGCACTGGAGGAGGGAGAGTCACTATTATCAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATTGATTGGCACTGGAGGAGGGAGAGTCACTATTATCAGCTGT  850

seq1  GTACCCACTTGATGGTGATCCTACCAAGCCCTAGTGGCTGCATTCACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACTTGATGGTGATCCTACCAAGCCCTAGTGGCTGCATTCACAAC  900

seq1  CAAGGCCACAGGGGTGGCCCTCCTTAAACTTAGTCACAAAACAGCAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGGCCACAGGGGTGGCCCTCCTTAAACTTAGTCACAAAACAGC-AAGC  949

seq1  AATATGAATGTTGTAAAGAAACTTGTAGGGAGGAGTGTGGG--AGGGTGA  998
       ||||||||||||||||| ||||||||||||||||||||||   ||||||
seq2  -ATATGAATGTTGTAAAG-AACTTGTAGGGAGGAGTGTGGGGAGGGGTGA  997

seq1  AGGGGGT  1005
      |||||||
seq2  AGGGGGT  1004


| Home | SequenceCutter | Blast | Download |