BAC Information

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BAC

Clone NameB6Ng01-296N02
Chromosome9 (Build37)
Map Location 74,733,659 - 74,883,919
singlet/doubletdoublet
Overlap geneOnecut1, BC031353
Upstream geneUnc13c, Wdr72, Nr1h2-ps, LOC100040764
Downstream geneArpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296N02.bB6Ng01-296N02.g
ACCGA092331GA092332
length1,135698
definitionB6Ng01-296N02.b B6Ng01-296N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,733,659 - 74,734,798)(74,883,224 - 74,883,919)
sequence
gaattctctttaggggattccggccccagaactattgtctgtctctcctg
agtccaggtttacctaacgggtattccaagtccatccatctttgtaaatg
ttctccaggccatgatatccatgcccacatatttccagatagattcctgg
tagacttctgcacgactcagtcaatacttggacttattttatttttaatt
tacatgtatgcatgtgtgtgttgtgtaggtatgtacacttgagcacagtg
cctacaggggccaaaaaaagggtgtcagatcacctggagatggagttaga
ggcaactgtgagcctcctgatgcaagtgaatgctgggaaccaaatcccta
gccccttggagagcagcaagagccactgactgttgagccatctctccagc
cccatcagtcaacacttccaatgctggaaagatctttgggtcattatgga
aggaaatctgacaaggtgacatttagatccttgactcagagtcggttcta
gggtgtcagtacacaccacacttttaaagtgtgttccagcacaacgcttc
ttaaaatctaggtagtagagcactgcttgtttgttgattgattgctagtc
tacatgtgtcttggacatgttgttctgtaatgtgggaaagatgtcctggt
aggcgtacacttgtgcatgagtagagcaatgtcgagcatctataggcagt
tcttcctgctcactcttagtttcctacagtgatcctcttgtacacccaca
gaccagcttgagggcagccaaccacacattaagaaacactcctccaaggg
aaacaaaccctaaacttttctgatagcgtgagctggggacacattcccac
attgcacgctgagatatgtatggcagtaggggcaggggaggaagtctctg
aatttaataactgggctttgatcgattggcatttccaaaccaacttgacc
tcaaaactctgttcacagagtatcttttaacaccctgagactcggtttcc
aaaaaaccacatttggctctgttttccatattatagcagaagcaagttcc
agacatatactgcctttctatctttgaaatcttctgctctattctcttgc
ctataatgacagatgcctgccacctgcacctggct
gaattcaagcccagcctaaactacatgaaggcgagtcgccaaaaccaaaa
ctcaacaacaacagcagcagcatatttgttaccattctatactgacaaat
taaccttctgtgcttccctacaactctgctgtatgggggtggggagagag
ggaatcaaagtatttttttttctagctgttctagaactcacagaaatctg
cctgcctgcatgtgtcactgttcctggctcttttgttccagacagggtct
cactctggcctcagtcacagcaaacctcctgctttagcctctcagtgttt
ttcacttgagtagacctgtatagagaaggagactgtactagtcaggctag
tggacacagctaactaatatttttattaataaaatactatacattatatg
aatatgagtaaatttggggttaaaatgtaacaagggacacaggagaaatg
tatgtgtaaagaaatctgttcctgggctggagagatggctcagcagctaa
gaacattgactgctcttccaaaggtccttgagttcaattctcagcaacca
catgataactcaccaccatctgtaatgggatccgatgccctcttctggtg
tgtctgtagacagcaacaatgtactcacatcaaataaaataaatcttttt
aaaaaagaaatctgttccctaaaatgaataaaaatatctatataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74733659_74734798
seq2: B6Ng01-296N02.b_47_1181

seq1  GAATTCTCTTTAGGGGATTCCGGCCCCAGAACTATTGTCTGTCTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAGGGGATTCCGGCCCCAGAACTATTGTCTGTCTCTCCTG  50

seq1  AGTCCAGGTTTACCTAACGGGTATTCCAAGTCCATCCATCTTTGTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGTTTACCTAACGGGTATTCCAAGTCCATCCATCTTTGTAAATG  100

seq1  TTCTCCAGGCCATGATATCCATGCCCACATATTTCCAGATAGATTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGCCATGATATCCATGCCCACATATTTCCAGATAGATTCCTGG  150

seq1  TAGACTTCTGCACGACTCAGTCAATACTTGGACTTATTTTATTTTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCTGCACGACTCAGTCAATACTTGGACTTATTTTATTTTTAATT  200

seq1  TACATGTATGCATGTGTGTGTTGTGTAGGTATGTACACTTGAGCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATGCATGTGTGTGTTGTGTAGGTATGTACACTTGAGCACAGTG  250

seq1  CCTACAGGGGCCAAAAAAAGGGTGTCAGATCACCTGGAGATGGAGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGGGCCAAAAAAAGGGTGTCAGATCACCTGGAGATGGAGTTAGA  300

seq1  GGCAACTGTGAGCCTCCTGATGCAAGTGAATGCTGGGAACCAAATCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGTGAGCCTCCTGATGCAAGTGAATGCTGGGAACCAAATCCCTA  350

seq1  GCCCCTTGGAGAGCAGCAAGAGCCACTGACTGTTGAGCCATCTCTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGGAGAGCAGCAAGAGCCACTGACTGTTGAGCCATCTCTCCAGC  400

seq1  CCCATCAGTCAACACTTCCAATGCTGGAAAGATCTTTGGGTCATTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGTCAACACTTCCAATGCTGGAAAGATCTTTGGGTCATTATGGA  450

seq1  AGGAAATCTGACAAGGTGACATTTAGATCCTTGACTCAGAGTCGGTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTGACAAGGTGACATTTAGATCCTTGACTCAGAGTCGGTTCTA  500

seq1  GGGTGTCAGTACACACCACACTTTTAAAGTGTGTTCCAGCACAACGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCAGTACACACCACACTTTTAAAGTGTGTTCCAGCACAACGCTTC  550

seq1  TTAAAATCTAGGTAGTAGAGCACTGCTTGTTTGTTGATTGATTGCTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTAGGTAGTAGAGCACTGCTTGTTTGTTGATTGATTGCTAGTC  600

seq1  TACATGTGTCTTGGACATGTTGTTCTGTAATGTGGGAAAGATGTCCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTCTTGGACATGTTGTTCTGTAATGTGGGAAAGATGTCCTGGT  650

seq1  AGGCGTACACTTGTGCATGAGTAGAGCAATGTCGAGCATCTATAGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTACACTTGTGCATGAGTAGAGCAATGTCGAGCATCTATAGGCAGT  700

seq1  TCTTCCTGCTCACTCTTAGTTTCCTACAGTGATCCTCTTGTACACCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGCTCACTCTTAGTTTCCTACAGTGATCCTCTTGTACACCCACA  750

seq1  GACCAGCTTGAGGGCAGCCAACCACACATTAAGAAACACTCCTCCAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTGAGGGCAGCCAACCACACATTAAGAAACACTCCTCCAAGGG  800

seq1  AAACAAACCCTAAACTTTTCTGATAGCGTGAGCTGGGGACACATTCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCCTAAACTTTTCTGATAGCGTGAGCTGGGGACACATTCCCAC  850

seq1  ATTGCAGGCTGAGATATGTATGGCAGTAGGGGCAGGGGAGGAAGTCTCTG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACGCTGAGATATGTATGGCAGTAGGGGCAGGGGAGGAAGTCTCTG  900

seq1  AATTAAATAACTGGGCTTTGATCGATTGGCATTTCCAAACCAACTTGACC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAACTGGGCTTTGATCGATTGGCATTTCCAAACCAACTTGACC  950

seq1  TCAAAACTCTGTTCACAGAGTATCTTTTAACACCCTGAAGACTCGGTTTC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAAAACTCTGTTCACAGAGTATCTTTTAACACCCTG-AGACTCGGTTTC  999

seq1  CAAAAA--CACATTTGGCTCTGTTTTCCATATTATAGGCAG-AGCAAGTT  1047
      ||||||  |||||||||||||||||||||||||||| |||| ||||||||
seq2  CAAAAAACCACATTTGGCTCTGTTTTCCATATTATA-GCAGAAGCAAGTT  1048

seq1  CCCAGACATTATACTGCCCTTTTCCTATCTTTGAAATTCTTCTGCCTCTA  1097
       ||||||| |||||||||   || |||||||||||| ||||||| |||||
seq2  -CCAGACA-TATACTGCC---TTTCTATCTTTGAAA-TCTTCTG-CTCTA  1091

seq1  TTC-CTCTGCTATAATGACAGATGCGTGCCACCTGCACCTGGCT  1140
      ||| ||   |||||||||||||||| ||||||||||||||||||
seq2  TTCTCTTGCCTATAATGACAGATGCCTGCCACCTGCACCTGGCT  1135

seq1: chr9_74883224_74883919
seq2: B6Ng01-296N02.g_68_765 (reverse)

seq1  TTTTTATATAGATATTTTTATTCATTTTA-GGAACAGATTTCTTTTTTAA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTATATAGATATTTTTATTCATTTTAGGGAACAGATTTCTTTTTTAA  50

seq1  AAAGATTTA-TTTATTTGATGTGAGTACATTGTTGCTGTCTACAGACACA  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTTATTTGATGTGAGTACATTGTTGCTGTCTACAGACACA  100

seq1  CCAGAAGAGGGCATCGGATCCCATTACAGATGGTGGTGAGTTATCATGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCATCGGATCCCATTACAGATGGTGGTGAGTTATCATGTG  150

seq1  GTTGCTGAGAATTGAACTCAAGGACCTTTGGAAGAGCAGTCAATGTTCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAGAATTGAACTCAAGGACCTTTGGAAGAGCAGTCAATGTTCTT  200

seq1  AGCTGCTGAGCCATCTCTCCAGCCCAGGAACAGATTTCTTTACACATACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGAGCCATCTCTCCAGCCCAGGAACAGATTTCTTTACACATACA  250

seq1  TTTCTCCTGTGTCCCTTGTTACATTTTAACCCCAAATTTACTCATATTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTGTGTCCCTTGTTACATTTTAACCCCAAATTTACTCATATTCA  300

seq1  TATAATGTATAGTATTTTATTAATAAAAATATTAGTTAGCTGTGTCCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTATAGTATTTTATTAATAAAAATATTAGTTAGCTGTGTCCACT  350

seq1  AGCCTGACTAGTACAGTCTCCTTCTCTATACAGGTCTACTCAAGTGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTAGTACAGTCTCCTTCTCTATACAGGTCTACTCAAGTGAAAA  400

seq1  ACACTGAGAGGCTAAAGCAGGAGGTTTGCTGTGACTGAGGCCAGAGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGAGGCTAAAGCAGGAGGTTTGCTGTGACTGAGGCCAGAGTGAG  450

seq1  ACCCTGTCTGGAACAAAAGAGCCAGGAACAGTGACACATGCAGGCAGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTGGAACAAAAGAGCCAGGAACAGTGACACATGCAGGCAGGCA  500

seq1  GATTTCTGTGAGTTCTAGAACAGCTAGAAAAAAAAATACTTTGATTCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGTGAGTTCTAGAACAGCTAGAAAAAAAAATACTTTGATTCCCT  550

seq1  CTCTCCCCACCCCCATACAGCAGAGTTGTAGGGAAGCACAGAAGGTTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCACCCCCATACAGCAGAGTTGTAGGGAAGCACAGAAGGTTAAT  600

seq1  TTGTCAGTATAGAATGGTAACAAATATGCTGCTGCTGTTGTTGTTGAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTATAGAATGGTAACAAATATGCTGCTGCTGTTGTTGTTGAGTT  650

seq1  TTGGTTTTGGCGACTCGCCTTCATGTAGTTTAGGCTGGGCTTGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGGCGACTCGCCTTCATGTAGTTTAGGCTGGGCTTGAATTC  698