BAC Information

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BAC

Clone NameB6Ng01-296O04
Chromosome9 (Build37)
Map Location 5,123,709 - 5,124,894
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296O04.bB6Ng01-296O04.g
ACCGA092383GA092384
length8891,165
definitionB6Ng01-296O04.b B6Ng01-296O04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatatctaaacataattaaagcaatacacagcaaaaca
gtagccaacaacaaactaaatggagagaaacttgaagcaatcccattaaa
atcagggactagacaagactgcccactttcttcctacctattcaatatag
tacttgaagtcctagctagagcaattagacaacaaaagcatatcaaggtg
atacaaactggaaaggaagaagtcaaaatatcactatttacagctacagt
gaagtagctggatataaaattaactcaaacaaatcagtggcctttctcta
cacaaaggataaacaaggctgagaaagaaattagggaaacaacacccttc
acaatagtcacaaataatataacataccttggtgtgactctaacgaagga
agtgaaagatctgtatgatacaatcacccatggaaagagttacagagaca
aagtttggagctgagacaaaaggatggaccatctagagactgccatatcc
aaggatccatcctataattagcctccaaacgatgacaccatgacatacac
tagcaagcctttgttgcaaggaccgtgatatagctgtcccttgtgagact
aggccggggcctagcaaacacagaagtggatgctcacagtcaactattgg
atggatcacagggccccccgtatccaaggagctaaagagatctgcaaccc
tatcagtggaacaacattatgaactaaccagtaccccagagctcttgact
ctagctgcatatgtatcaaaagatggcctagtttgccatcactggaaaga
gaggcccattggtcagcaaactttatatgccccagtacaggggaatgcca
gggccaaaaaatgggaatgggtgggttaggggatttggg

gaattcaaggctatgcactgcagagatgaacaggacaaaaaaaaaaaaaa
aaggtacaaaaaggaaccgatgccatagttctgagaaaaatacacttcac
agactcccatcttagaaactctgggatggagaacagagtttcatattaaa
caacagctgccaacttccacaaattagttctgttcacaaattctcttggc
ttggagaacatgaggaaacagaaggatgagaatgaatacaaacaataaag
acttcacccaatgcaaagtaaagaagagcagggtgagagaagggataggt
acacagcactcagaggagaaggaggccttgtattcatggtgcagaggtat
aaccatgtataaaaaaaagggtgaataggcaaaaagtcaatataaagacc
atatttaaagagaaatataaccacaaaactttgcaatttatcacaaattc
ataatttgtactgagatttagggaaatcttgcaacctgcattccttactg
tgattatagggtgagagataggaaagtgggtagaagagggactatagaga
ggtgtaaagaacactaatgactttgaaaacccacatagaaaacttctact
ctagaaacttcctatgatatacacatacttatgtatatacctatatatac
attaaaaaaaaaagagtttaaatccctttaccctacaatgggcaacaatg
ccttttctagacaccatgaattatcaaacaaaaaacccagtgctatcctg
cctaccaactcccctgaaaacacccacaacactgataaactgcacaccat
actctctgctccatttcctgcctactttccaagaagccttacctgtacca
gtaataccaggtatgccccagcccaacctcttcctggcaactcccctgaa
aacagaccaaacagcagcaaactgcaccccttacctgcccccatttcgaa
ccataacaactctgccagttttcccaaagtatcctagcaccatggacaat
ggtagtcacccatactaagccctgtctagcataatacaccaatagcagtt
agtgtaccacaatagtgcacctccatttcttgagctgtaactgcctgcaa
tctcagggctgccagtaccgacatcgaatagacccagcatgaccttggcg
tcaatatttcctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5123709_5124894
seq2: B6Ng01-296O04.g_68_1232

seq1  GAATTCAAGGCTATGCACTGCAGAGATGAACAGGACAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTATGCACTGCAGAGATGAACAGGACAAAAAAAAAAAAAA  50

seq1  AAGGTACAAAAAGGAACCGATGCCATAGTTCTGAGAAAAATACACTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAAAAAGGAACCGATGCCATAGTTCTGAGAAAAATACACTTCAC  100

seq1  AGACTCCCATCTTAGAAACTCTGGGATGGAGAACAGAGTTTCATATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCATCTTAGAAACTCTGGGATGGAGAACAGAGTTTCATATTAAA  150

seq1  CAACAGCTGCCAACTTCCACAAATTAGTTCTGTTCACAAATTCTCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGCCAACTTCCACAAATTAGTTCTGTTCACAAATTCTCTTGGC  200

seq1  TTGGAGAACATGAGGAAACAGAAGGATGAGAATGAATACAAACAATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAACATGAGGAAACAGAAGGATGAGAATGAATACAAACAATAAAG  250

seq1  ACTTCACCCAATGCAAAGTAAAGAAGAGCAGGGTGAGAGAAGGGATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCCAATGCAAAGTAAAGAAGAGCAGGGTGAGAGAAGGGATAGGT  300

seq1  ACACAGCACTCAGAGGAGAAGGAGGCCTTGTATTCATGGTGCAGAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCACTCAGAGGAGAAGGAGGCCTTGTATTCATGGTGCAGAGGTAT  350

seq1  AACCATGTATAAAAAAAAGGGTGAATAGGCAAAAAGTCAATATAAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTATAAAAAAAAGGGTGAATAGGCAAAAAGTCAATATAAAGACC  400

seq1  ATATTTAAAGAGAAATATAACCACAAAACTTTGCAATTTATCACAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAGAGAAATATAACCACAAAACTTTGCAATTTATCACAAATTC  450

seq1  ATAATTTGTACTGAGATTTAGGGAAATCTTGCAACCTGCATTCCTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTACTGAGATTTAGGGAAATCTTGCAACCTGCATTCCTTACTG  500

seq1  TGATTATAGGGTGAGAGATAGGAAAGTGGGTAGAAGAGGGACTATAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAGGGTGAGAGATAGGAAAGTGGGTAGAAGAGGGACTATAGAGA  550

seq1  GGTGTAAAGAACACTAATGACTTTGAAAACCCACATAGAAAACTTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAAGAACACTAATGACTTTGAAAACCCACATAGAAAACTTCTACT  600

seq1  CTAGAAACTTCCTATGATATACACATACTTATGTATATACCTATATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACTTCCTATGATATACACATACTTATGTATATACCTATATATAC  650

seq1  ATTAAAAAAAAAAGAGTTTAAATCCCTTTACCCTACAATGGGCAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAAAGAGTTTAAATCCCTTTACCCTACAATGGGCAACAATG  700

seq1  CCTTTTCTAGACACCATGAATTATCAAACAAAAAACCCAGTGCTATCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTAGACACCATGAATTATCAAACAAAAAACCCAGTGCTATCCTG  750

seq1  CCTACCAACTCCCCTGAAAACACCCACAACACTGATAAACTGCACACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAACTCCCCTGAAAACACCCACAACACTGATAAACTGCACACCAT  800

seq1  ACTCTCTGCTCCATTTCCTGCCTACTTTCCAAGAAGCCTTACCTGTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGCTCCATTTCCTGCCTACTTTCCAAGAAGCCTTACCTGTACCA  850

seq1  GTAATACCAGGTATGCCCCAGCCCAACCTCTTCCTGGCAACTCCCCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCAGGTATGCCCCAGCCCAACCTCTTCCTGGCAACTCCCCTGAA  900

seq1  AACAGACCAAACAGCAGCAAACTGCACCCCTTACCCTGCCCCCATTTCGA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACAGACCAAACAGCAGCAAACTGCACCCCTTA-CCTGCCCCCATTTCGA  949

seq1  ACCAT-ACAACTCTGCCAGTTTTCCCAAGGTATCCTAGCACCAGGGACAA  999
      ||||| |||||||||||||||||||||| |||||||||||||| ||||||
seq2  ACCATAACAACTCTGCCAGTTTTCCCAAAGTATCCTAGCACCATGGACAA  999

seq1  TGGGTAAGTTCCACCCATACTAAGCCCTTGTCTAGCCATAAATTACACCC  1049
      |||   |||  |||||||||||||||| ||||||| |||||  |||| ||
seq2  TGG--TAGT--CACCCATACTAAGCCC-TGTCTAG-CATAA--TACA-CC  1040

seq1  AATAGCAGTAAGTTGTACCACATAATTTGCA-CTCCATTTCCTGAGCTGT  1098
      ||||||||| || ||||||||| |   |||| ||||||||| ||||||||
seq2  AATAGCAGTTAG-TGTACCACA-ATAGTGCACCTCCATTTCTTGAGCTGT  1088

seq1  AACTGCCTGCATTCTCAGGGGCCTGCCAGTACCAGAGACAACCAGATAAG  1148
      ||||||||||| ||||||||  |||||||||||   |||| | | |||  
seq2  AACTGCCTGCAATCTCAGGG--CTGCCAGTACC---GACATCGA-ATA--  1130

seq1  AACCCAACCCATGACCTTGCCTTCCATATTTCCCTAAA  1186
       |||||   |||||||||| | || |||||| ||||||
seq2  GACCCA--GCATGACCTTGGCGTCAATATTT-CCTAAA  1165


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