BAC Information

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BAC

Clone NameB6Ng01-298G08
Chromosome9 (Build37)
Map Location 21,812,049 - 21,939,249
singlet/doubletdoublet
Overlap genePrkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5
Upstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik
Downstream genePigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298G08.bB6Ng01-298G08.g
ACCGA093512GA093513
length369718
definitionB6Ng01-298G08.b B6Ng01-298G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,938,881 - 21,939,249)(21,812,049 - 21,812,765)
sequence
ccaccatactcaggctccaccgctggctctttggtctcctcagactccaa
cctgtttgtttgtttgtttatgcagcctctggctctgaggctgaagttca
tggtcctctgacttctgccttcccagtgctgggatcccaggcgtggccac
cttgcccggctgtgtctgcgcccatttgcttaacttcatcagcgtgtgta
tggcatatgtaggtatgtgtgtacaggacttggaggcccggtccatctgt
ccttccctcatctttgtcaacaagcacttttacacactgagccctctcac
catacctagctcatcagtgccagctatgcagttcagggagaggcacacag
gaagtgggggggggggagg
gaattctaggttggggtctcccactgagccacaccccagtctgtactctg
gggctctaggcctgctctgccccgttctgaaacccagccctgttgcttct
cagaacataaatagacacccaggctgtactgggtgttgtgcaggttagaa
ccagacctgtgcctgcctcgggagtactagaagtcacagcatgctgatgg
agagggaagctcagggtatctagagctttcttgcatggctaccctcaccc
atctcggaggcaggaaatgaaaatttcctggaggaggggctatcttaact
aaaattggtagggtaatttaagtcagccatggaaagtattccagatcgaa
agaactgaaaacaaggggggtgggggtcctgaatgttgtccttgagtttc
agggcaggaaaagtgacttgtggagaaagtgaagtttaaatgatggggtg
ggacaggtgggcctgatcacacagggcatcgtggcctgcctgcatcaagc
tctaggctcttcagagagccaccgggaaccagtctcaccctgggatgtgg
gtgtgtggggaagatcttggggctggaagacatgacaaagctgaggtaga
gcctgcctctcacccgccaccctgccactttttctgcagagtaagctttc
ttgagcttcaggctggaaagaagtctctggaacaccaggtagaaacactg
cgggcagccaaagaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21938881_21939249
seq2: B6Ng01-298G08.b_54_422 (reverse)

seq1  CCTCCCCCCCCCCCACTTCCTGTGTGCCTCTCCCTGAACTGCATAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCCCCCCACTTCCTGTGTGCCTCTCCCTGAACTGCATAGCTGG  50

seq1  CACTGATGAGCTAGGTATGGTGAGAGGGCTCAGTGTGTAAAAGTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGAGCTAGGTATGGTGAGAGGGCTCAGTGTGTAAAAGTGCTTGT  100

seq1  TGACAAAGATGAGGGAAGGACAGATGGACCGGGCCTCCAAGTCCTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGATGAGGGAAGGACAGATGGACCGGGCCTCCAAGTCCTGTACA  150

seq1  CACATACCTACATATGCCATACACACGCTGATGAAGTTAAGCAAATGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTACATATGCCATACACACGCTGATGAAGTTAAGCAAATGGGC  200

seq1  GCAGACACAGCCGGGCAAGGTGGCCACGCCTGGGATCCCAGCACTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACAGCCGGGCAAGGTGGCCACGCCTGGGATCCCAGCACTGGGAA  250

seq1  GGCAGAAGTCAGAGGACCATGAACTTCAGCCTCAGAGCCAGAGGCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGTCAGAGGACCATGAACTTCAGCCTCAGAGCCAGAGGCTGCAT  300

seq1  AAACAAACAAACAAACAGGTTGGAGTCTGAGGAGACCAAAGAGCCAGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAGGTTGGAGTCTGAGGAGACCAAAGAGCCAGCGG  350

seq1  TGGAGCCTGAGTATGGTGG  369
      |||||||||||||||||||
seq2  TGGAGCCTGAGTATGGTGG  369

seq1: chr9_21812049_21812765
seq2: B6Ng01-298G08.g_67_784

seq1  GAATTCTAGGTTGGGGTCTCCCACTGAGCCACACCCCAGTCTGTACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTGGGGTCTCCCACTGAGCCACACCCCAGTCTGTACTCTG  50

seq1  GGGCTCTAGGCCTGCTCTGCCCCGTTCTGAAACCCAGCCCTGTTGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAGGCCTGCTCTGCCCCGTTCTGAAACCCAGCCCTGTTGCTTCT  100

seq1  CAGAACATAAATAGACACCCAGGCTGTACTGGGTGTTGTGCAGGTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATAAATAGACACCCAGGCTGTACTGGGTGTTGTGCAGGTTAGAA  150

seq1  CCAGACCTGTGCCTGCCTCGGGAGTACTAGAAGTCACAGCATGCTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGTGCCTGCCTCGGGAGTACTAGAAGTCACAGCATGCTGATGG  200

seq1  AGAGGGAAGCTCAGGGTATCTAGAGCTTTCTTGCATGGCTACCCTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGCTCAGGGTATCTAGAGCTTTCTTGCATGGCTACCCTCACCC  250

seq1  ATCTCGGAGGCAGGAAATGAAAATTTCCTGGAGGAGGGGCTATCTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGAGGCAGGAAATGAAAATTTCCTGGAGGAGGGGCTATCTTAACT  300

seq1  AAAATTGGTAGGGTAATTTAAGTCAGCCATGGAAAGTATTCCAGATCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTAGGGTAATTTAAGTCAGCCATGGAAAGTATTCCAGATCGAA  350

seq1  AGAACTGAAAACAAGGGGGGTGGGGGTCCTGAATGTTGTCCTTGAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAAACAAGGGGGGTGGGGGTCCTGAATGTTGTCCTTGAGTTTC  400

seq1  AGGGCAGGAAAAGTGACTTGTGGAGAAAGTGAAGTTTAAATGATGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAAAAGTGACTTGTGGAGAAAGTGAAGTTTAAATGATGGGGTG  450

seq1  GGACAGGTGGGCCTGATCACACAGGGCATCGTGGCCTGCCTGCATCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGGGCCTGATCACACAGGGCATCGTGGCCTGCCTGCATCAAGC  500

seq1  TCTAGGCTCTTCAGAGAGCCACCGGGAACCAGTCTCACCCTGGGATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCTTCAGAGAGCCACCGGGAACCAGTCTCACCCTGGGATGTGG  550

seq1  GTGTGTGGGGAAGATCTTGGGGCTGGAAGACATGACAAAGCTGAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGGAAGATCTTGGGGCTGGAAGACATGACAAAGCTGAGGTAGA  600

seq1  GCCTGCCTCTCACCCGCCACCCTGCCACTTTTTCTGCAGAGTAAGC-TTC  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTGCCTCTCACCCGCCACCCTGCCACTTTTTCTGCAGAGTAAGCTTTC  650

seq1  TTGAGCTTCAGGCTGGAAAGAAGTCTCTGGAAGACCAGGTAGAAACACTG  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGAGCTTCAGGCTGGAAAGAAGTCTCTGGAACACCAGGTAGAAACACTG  700

seq1  CGGGCAGCGAAAGAAGAA  717
      |||||||| |||||||||
seq2  CGGGCAGCCAAAGAAGAA  718