BAC Information

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BAC

Clone NameB6Ng01-299H21
Chromosome9 (Build37)
Map Location 20,284,704 - 20,497,461
singlet/doubletdoublet
Overlap geneZfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Upstream geneOlfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H21.bB6Ng01-299H21.g
ACCGA094318GA094319
length387524
definitionB6Ng01-299H21.b B6Ng01-299H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,284,704 - 20,285,096)(20,496,932 - 20,497,461)
sequence
cagcaaccacatggtggctcacaaccacctgtgatgggacccaatgtcct
cttctggtgtgtctgaagacagtgacagtgtactcatattcataaaataa
gtaatcttttaaaagaagattcttttcttatataatatatcctgattaca
ccaatctttgggaggaaatagcattataaagcttgctacctaacaggata
ctgaattatcaactcttatctcaatgaccccatacaaatgacccaggaga
caagtcagaaaacttctcttagctgctacagaaggtctccaatctctctt
ggcagcagcaattccctgagaggtgttttgctgtgtttctgtcattagtg
tattatattattagttgtgtatgtgtgttggtgtgtg
agttagtagtgacggtggctcagttgtgatcagtgtgctggggttatgta
agacattaacaattcaagaaagggagcagggaccaggcgggtgctccctg
gtctgtcttgtggaattttcctgtaaacctaaacttacttcaaagaagac
gtttattagaaaagaatcagcagggcgctcacaagcattctggaagctgt
tgggttttgtgtgtgataagagcctggggcccagtggaccgcatgctcag
cactgtgattggctcagagtggatagtaattgatgacgtgcccgaagcac
atctgtgacacccacattagttcagatgtggtacaaggcagccatctccc
aagttcacacactagtgaggtggtggagccggcatatgtgctaatagtgt
gcgtggaagtcagaggtcaacgacaacgccaaggatcttctctgtttatc
cactgcctttgttttttttttcattttatttatttgtgtctgtgtatata
tatgtgtgtgagtgtgtgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20284704_20285096
seq2: B6Ng01-299H21.b_48_440

seq1  GAATTCCAGCAACCACATGGTGGCTCACAACCACCTGTGATGGGACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAACCACATGGTGGCTCACAACCACCTGTGATGGGACCCAA  50

seq1  TGTCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATTCATA  100

seq1  AAATAAGTAATCTTTTAAAAGAAGATTCTTTTCTTATATAATATATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAATCTTTTAAAAGAAGATTCTTTTCTTATATAATATATCCTG  150

seq1  ATTACACCAATCTTTGGGAGGAAATAGCATTATAAAGCTTGCTACCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACCAATCTTTGGGAGGAAATAGCATTATAAAGCTTGCTACCTAAC  200

seq1  AGGATACTGAATTATCAACTCTTATCTCAATGACCCCATACAAATGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTGAATTATCAACTCTTATCTCAATGACCCCATACAAATGACCC  250

seq1  AGGAGACAAGTCAGAAAACTTCTCTTAGCTGCTACAGAAGGTCTCCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAAGTCAGAAAACTTCTCTTAGCTGCTACAGAAGGTCTCCAATC  300

seq1  TCTCTTGGCAGCAGCAATTCCCTGAGAGGTGTTTTGCTGTGTTTCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCAGCAGCAATTCCCTGAGAGGTGTTTTGCTGTGTTTCTGTCA  350

seq1  TTAGTGTATTATATTATTAGTTGTGTATGTGTGTTGGTGTGTG  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTATTATATTATTAGTTGTGTATGTGTGTTGGTGTGTG  393

seq1: chr9_20496932_20497461
seq2: B6Ng01-299H21.g_69_598 (reverse)

seq1  TACATACACACACTCACACACATATATATACACAGACACAAATAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACACACTCACACACATATATATACACAGACACAAATAAATAAA  50

seq1  ATGAAAAAAAAAACAAAGGCAGTGGATAAACAGAGAAGATCCTTGGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAAACAAAGGCAGTGGATAAACAGAGAAGATCCTTGGCGTT  100

seq1  GTCGTTGACCTCTGACTTCCACGCACACTATTAGCACATATGCCGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGACCTCTGACTTCCACGCACACTATTAGCACATATGCCGGCTCC  150

seq1  ACCACCTCACTAGTGTGTGAACTTGGGAGATGGCTGCCTTGTACCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCACTAGTGTGTGAACTTGGGAGATGGCTGCCTTGTACCACATC  200

seq1  TGAACTAATGTGGGTGTCACAGATGTGCTTCGGGCACGTCATCAATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAATGTGGGTGTCACAGATGTGCTTCGGGCACGTCATCAATTACT  250

seq1  ATCCACTCTGAGCCAATCACAGTGCTGAGCATGCGGTCCACTGGGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCTGAGCCAATCACAGTGCTGAGCATGCGGTCCACTGGGCCCCA  300

seq1  GGCTCTTATCACACACAAAACCCAACAGCTTCCAGAATGCTTGTGAGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTATCACACACAAAACCCAACAGCTTCCAGAATGCTTGTGAGCGC  350

seq1  CCTGCTGATTCTTTTCTAATAAACGTCTTCTTTGAAGTAAGTTTAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGATTCTTTTCTAATAAACGTCTTCTTTGAAGTAAGTTTAGGTTT  400

seq1  ACAGGAAAATTCCACAAGACAGACCAGGGAGCACCCGCCTGGTCCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATTCCACAAGACAGACCAGGGAGCACCCGCCTGGTCCCTGCT  450

seq1  CCCTTTCTTGAATTGTTAATGTCTTACATAACCCCAGCACACTGATCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTGAATTGTTAATGTCTTACATAACCCCAGCACACTGATCACA  500

seq1  ACTGAGCCACCGTCACTACTAACTGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  ACTGAGCCACCGTCACTACTAACTGAATTC  530