BAC Information

Click to search

BAC

Clone NameB6Ng01-300O08
Chromosome9 (Build37)
Map Location 12,269,048 - 12,340,951
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039989, LOC622505
Downstream geneLOC100039680, LOC665285, LOC100039729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300O08.bB6Ng01-300O08.g
ACCGA095351GA095352
length1,1311,171
definitionB6Ng01-300O08.b B6Ng01-300O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,269,048 - 12,270,182)(12,339,771 - 12,340,951)
sequence
gaattctgattagaatttataacaaaaccaaagcgaactaaggaaccaaa
agaagcatttagaataaggaaaagtcctgtttgatggctagaaaattagt
attttcgctttttatttattttctgtttttttttttacacatagatacaa
tgtttcttgattatacacagcccacataaatctccctttcaacttcatgt
ttctgttttgttttgttttgttttgttttgttttgttttaaatatataag
tcactgagttcaattattgctgtcagtatgtgcatggttacaggttacta
ctgggatgtgcacaacctaccagtgtccatagtttcaagaaaaagtgact
cttctttctctgcagtcatcatttgccaatttatcttcctggaggcagga
ccttgggacacccccccacacacaatctttatccatgtttgaatgtgtaa
tgcatttatttgttgcaggtagccaaagctattttgagttcatgtcatgt
catgttcaaaaggcatctcatagcactctcctctagcgtcaaactcttag
attcttcctggaaacattaacctttttgaacacctaactacacaaagtaa
gctacaggtatctgtcttccttcaaatggtagggttatttgtagtctccc
ctcccccagcctgaaacctgcttgctcaggggtggagcttcctgctcatt
cgttctgccacgcccactgctagaacctgcggagccacacacgtgcacct
ttctactggaccagagattatttggcgggagtcgggtcccctcccccttc
ctttataactagtgtcgcaacaataaaatttgagctttgatcaaaacaaa
tttgtcttagctccgtttcttctttcgccccatctagattcctctcttac
agctttgagtggccttctcagtcgaaccgttcatgttgcgagctgctggc
ggccgcaacattttggcgccagaactgggaacctgaagaatggcagagag
atgctaagagaaacgctgctgctgttggagctccacaagaaagatcttcg
tatcggacatcgagcacgacaggtaccacatgctagcgctagcttaaatt
cagttggtaagtgttgctgaggatgcggtag

gaattctaatactcgtggcaaaattatctaacttaagttcattgcagcca
atcacaatgttaccctctaagctgcaaagggcatctcacttgtccacagc
ctttcaaatagttctaagcctttgctccatgaattaagctttgggggcac
tcagaatctggtaaaaacaaatatgtattttcttctaatgtttccttata
atgtgtcaatctaattgtatggttaaataaccaaaaatcttctatatata
aatgattattttatttacatagtaaaagatagaagatttttaaagatatt
aaatttctgtaatcaaatctacagcacaaggagattcaattggagtgtgg
gtgccttctcctcagttttttccaatttttcctctaattattctcagcag
gtatctgatttaaacatgaggaaaatgaataaaatatgcctgctaaaaat
tgtgcatttcagctgggtagtggtggtgcacatctttaatcctagcactt
gagaggcagaggcaagtggatttctgaatacaaggccagcctggtctaca
aagtgatttccaggaaagacagggctattcagagaaaccctgtctcaaaa
taccaaaagaaaaaacaatgtgctttttaatttaaccttataaaatctgg
agactatattgtaagttagtttcaatacctcagtttccacaggtgaagaa
tttgcagataattttcttgaatttcaaagaagattgataaatatttaaga
atctcaaaacatgaaaggacaattgacaacattgtatatggtttactttg
agtctccacaaaagcaagctctttcctggacactaagaaattgtcaacaa
ccataaagaatagaaagaactgaaatagaagacaaagataattttaccca
cactgctcagcatttcacaactctcaagtattctctatagcagtagtttt
tataaataaaaaaaataaacaataagtttgcactaacaatgcaattttca
aatccaaaggaaaattgttaaaaaatactggagaagaagaaaagtaaaga
aaaaccacagagtgcaacagtgtgtgtctgcctaaagttagaaagtgtta
aaatacagaaacatacgaaaacagaacaattactggcatcattaacttct
cagcaggtccatgactcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12269048_12270182
seq2: B6Ng01-300O08.b_45_1175

seq1  GAATTCTGATTAGAATTTATAACAAAACCAAAGCGAACTAAGGAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTAGAATTTATAACAAAACCAAAGCGAACTAAGGAACCAAA  50

seq1  AGAAGCATTTAGAATAAGGAAAAGTCCTGTTTGATGGCTAGAAAATTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTTAGAATAAGGAAAAGTCCTGTTTGATGGCTAGAAAATTAGT  100

seq1  ATTTTCGCTTTTTATTTATTTTCTGTTTTTTTTTTTACACATAGATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCGCTTTTTATTTATTTTCTGTTTTTTTTTTTACACATAGATACAA  150

seq1  TGTTTCTTGATTATACACAGCCCACATAAATCTCCCTTTCAACTTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGATTATACACAGCCCACATAAATCTCCCTTTCAACTTCATGT  200

seq1  TTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAATATATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAATATATAAG  250

seq1  TCACTGAGTTCAATTATTGCTGTCAGTATGTGCATGGTTACAGGTTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTTCAATTATTGCTGTCAGTATGTGCATGGTTACAGGTTACTA  300

seq1  CTGGGATGTGCACAACCTACCAGTGTCCATAGTTTCAAGAAAAAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTGCACAACCTACCAGTGTCCATAGTTTCAAGAAAAAGTGACT  350

seq1  CTTCTTTCTCTGCAGTCATCATTTGCCAATTTATCTTCCTGGAGGCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCTGCAGTCATCATTTGCCAATTTATCTTCCTGGAGGCAGGA  400

seq1  CCTTGGGACACCCCCCCACACACAATCTTTATCCATGTTTGAATGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGACACCCCCCCACACACAATCTTTATCCATGTTTGAATGTGTAA  450

seq1  TGCATTTATTTGTTGCAGGTAGCCAAAGCTATTTTGAGTTCATGTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATTTGTTGCAGGTAGCCAAAGCTATTTTGAGTTCATGTCATGT  500

seq1  CATGTTCAAAAGGCATCTCATAGCACTCTCCTCTAGCGTCAAACTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAAAGGCATCTCATAGCACTCTCCTCTAGCGTCAAACTCTTAG  550

seq1  ATTCTTCCTGGAAACATTAACCTTTTTGAACACCTAACTACACAAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTGGAAACATTAACCTTTTTGAACACCTAACTACACAAAGTAA  600

seq1  GCTACAGGTATCTGTCTTCCTTCAAATGGTAGGGTTATTTGTAGTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGTATCTGTCTTCCTTCAAATGGTAGGGTTATTTGTAGTCTCCC  650

seq1  CTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATT  700

seq1  CGTTCTGCCACGCCCACTGCTAGAACCTGCGGAGCCACACACGTGCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGCCACGCCCACTGCTAGAACCTGCGGAGCCACACACGTGCACCT  750

seq1  TTCTACTGGACCAGAGATTATTTGGCGGGAGTCGGGTCCCCTCCCCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGGACCAGAGATTATTTGGCGGGAGTCGGGTCCCCTCCCCCTTC  800

seq1  CTTTATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAAAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAAAACAAA  850

seq1  TTTGTCTTAGCTCCGTTTCTTCTTTCGCCCCATCTAGATTCCTCTCTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGCTCCGTTTCTTCTTTCGCCCCATCTAGATTCCTCTCTTAC  900

seq1  AGC-TTGAGTGGCCTTCTCAGTCGAACCGTTCATGTTGCGAGCTGCTGGC  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAGTGGCCTTCTCAGTCGAACCGTTCATGTTGCGAGCTGCTGGC  950

seq1  GGCCGCAACATTTTGGCGCCAGAACTGGG-ACCTGAAGAATGGCAGAGAG  998
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCCGCAACATTTTGGCGCCAGAACTGGGAACCTGAAGAATGGCAGAGAG  1000

seq1  ATGCTAAGAGAAACGCTGCTGCTG-TGGAGCTCCACAGGAAAGGATCTTC  1047
      |||||||||||||||||||||||| |||||||||||| |||| |||||||
seq2  ATGCTAAGAGAAACGCTGCTGCTGTTGGAGCTCCACAAGAAA-GATCTTC  1049

seq1  GTATCGGACATCGGAGCAACGGACAGGTA-CACATGCTAGCGCTAGCTTA  1096
      |||||||||||| |||||   |||||||| ||||||||||||||||||||
seq2  GTATCGGACATC-GAGCA--CGACAGGTACCACATGCTAGCGCTAGCTTA  1096

seq1  AAATTTCAGTTTTGTAAAGTGTTGCTGAGGATGCGGTAG  1135
      ||  |||||  |||  |||||||||||||||||||||||
seq2  AA--TTCAG--TTGGTAAGTGTTGCTGAGGATGCGGTAG  1131


seq1: chr9_12339771_12340951
seq2: B6Ng01-300O08.g_65_1235 (reverse)

seq1  CTATGAGTCATGGACACCCTGCTGAAGAAGTAAATGGAATGCCCAAGTTA  50
      ||||||||||||||   ||||||| |||||| ||||  |||||  ||| |
seq2  CTATGAGTCATGGA---CCTGCTG-AGAAGTTAATG--ATGCC--AGTAA  42

seq1  TTGTTTCTGTTTTCCTATGTTTCTGTATTTT-ACACTTTCCCTTACTTTT  99
      ||| |||||||||| |||||||||||||||| ||||||||   ||  |||
seq2  TTG-TTCTGTTTTCGTATGTTTCTGTATTTTAACACTTTC---TAACTTT  88

seq1  AGGCAAGACACCACACTGTTGCAACTCTGT-GTTTTTCTTTACTTTTCT-  147
      |||| ||||| ||||||||||| ||||||| |||||||||||||||||| 
seq2  AGGC-AGACA-CACACTGTTGC-ACTCTGTGGTTTTTCTTTACTTTTCTT  135

seq1  -CTCTCCAGTATTTTTTTAAACAA-TTTCCTTTGGATTTGAAAATTGCAT  195
        |||||||||||||||  ||||| |||||||||||||||||||||||||
seq2  CTTCTCCAGTATTTTTT--AACAATTTTCCTTTGGATTTGAAAATTGCAT  183

seq1  TGTTAGTGCAAACTTA-TGTTTA-TTTTTTTATTTATAAAAACTACTGCT  243
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TGTTAGTGCAAACTTATTGTTTATTTTTTTTATTTATAAAAACTACTGCT  233

seq1  ATAGAGAATACTTGAGAGTTGTGAAATGCTGAGCAGTGTGGGTAAAATTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATACTTGAGAGTTGTGAAATGCTGAGCAGTGTGGGTAAAATTA  283

seq1  TCTTTGTCTTCTATTTCAGTTCTTTCTATTCTTTATGGTTGTTGACAATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTTCTATTTCAGTTCTTTCTATTCTTTATGGTTGTTGACAATT  333

seq1  TCTTAGTGTCCAGGAAAGAGCTTGCTTTTGTGGAGACTCAAAGTAAACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGTCCAGGAAAGAGCTTGCTTTTGTGGAGACTCAAAGTAAACCA  383

seq1  TATACAATGTTGTCAATTGTCCTTTCATGTTTTGAGATTCTTAAATATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATGTTGTCAATTGTCCTTTCATGTTTTGAGATTCTTAAATATTT  433

seq1  ATCAATCTTCTTTGAAATTCAAGAAAATTATCTGCAAATTCTTCACCTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTTCTTTGAAATTCAAGAAAATTATCTGCAAATTCTTCACCTGT  483

seq1  GGAAACTGAGGTATTGAAACTAACTTACAATATAGTCTCCAGATTTTATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAGGTATTGAAACTAACTTACAATATAGTCTCCAGATTTTATA  533

seq1  AGGTTAAATTAAAAAGCACATTGTTTTTTCTTTTGGTATTTTGAGACAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAATTAAAAAGCACATTGTTTTTTCTTTTGGTATTTTGAGACAGG  583

seq1  GTTTCTCTGAATAGCCCTGTCTTTCCTGGAAATCACTTTGTAGACCAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGAATAGCCCTGTCTTTCCTGGAAATCACTTTGTAGACCAGGC  633

seq1  TGGCCTTGTATTCAGAAATCCACTTGCCTCTGCCTCTCAAGTGCTAGGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTATTCAGAAATCCACTTGCCTCTGCCTCTCAAGTGCTAGGAT  683

seq1  TAAAGATGTGCACCACCACTACCCAGCTGAAATGCACAATTTTTAGCAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTGCACCACCACTACCCAGCTGAAATGCACAATTTTTAGCAGG  733

seq1  CATATTTTATTCATTTTCCTCATGTTTAAATCAGATACCTGCTGAGAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATTCATTTTCCTCATGTTTAAATCAGATACCTGCTGAGAATA  783

seq1  ATTAGAGGAAAAATTGGAAAAAACTGAGGAGAAGGCACCCACACTCCAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGAAAAATTGGAAAAAACTGAGGAGAAGGCACCCACACTCCAAT  833

seq1  TGAATCTCCTTGTGCTGTAGATTTGATTACAGAAATTTAATATCTTTAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCCTTGTGCTGTAGATTTGATTACAGAAATTTAATATCTTTAAA  883

seq1  AATCTTCTATCTTTTACTATGTAAATAAAATAATCATTTATATATAGAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTATCTTTTACTATGTAAATAAAATAATCATTTATATATAGAAG  933

seq1  ATTTTTGGTTATTTAACCATACAATTAGATTGACACATTATAAGGAAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGTTATTTAACCATACAATTAGATTGACACATTATAAGGAAACA  983

seq1  TTAGAAGAAAATACATATTTGTTTTTACCAGATTCTGAGTGCCCCCAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAAAATACATATTTGTTTTTACCAGATTCTGAGTGCCCCCAAAG  1033

seq1  CTTAATTCATGGAGCAAAGGCTTAGAACTATTTGAAAGGCTGTGGACAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCATGGAGCAAAGGCTTAGAACTATTTGAAAGGCTGTGGACAAG  1083

seq1  TGAGATGCCCTTTGCAGCTTAGAGGGTAACATTGTGATTGGCTGCAATGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCCCTTTGCAGCTTAGAGGGTAACATTGTGATTGGCTGCAATGA  1133

seq1  ACTTAAGTTAGATAATTTTGCCACGAGTATTAGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTTAGATAATTTTGCCACGAGTATTAGAATTC  1171


| Home | SequenceCutter | Blast | Download |