BAC Information

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BAC

Clone NameB6Ng01-301K19
Chromosome9 (Build37)
Map Location 67,092,063 - 67,220,596
singlet/doubletdoublet
Overlap geneTln2
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301K19.bB6Ng01-301K19.g
ACCGA095926GA095927
length1,1191,141
definitionB6Ng01-301K19.b B6Ng01-301K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,219,469 - 67,220,596)(67,092,063 - 67,093,239)
sequence
gaattctcaactgagcagcacctaaagaaatgttcaacattcttagtcat
tagggaaatgcaatcaaaagaaccctgagattccacttcacatcagtcag
aatggctaagatcaaaaactcaggttacagcagatgttggcgaggatgtg
gagaaagaggaacactcctctattgctggtgggattgcaaatctggtaca
accactctggaaatcagtccggcggttcctcagaaaattggacatagtag
tacctgaggacccagctatactactcctgggcatatacccagaagatgct
ctaacatgtaataaggacacattctccaccaagtccatttgtgtttcttg
tgacaaagttatgtactcttaaaaattttacaataaaaacaaaaatctta
caacaaaaacagagtgtttctaaaaataagctgtgtcaaagtggaaacaa
ttttaaggctctggatgggtatgtattgacacatttctcttctaaaaagg
attgccaatttttttaagaggcgtgtgtctgtgtgtgcatgtgtgtgttc
attcatgcatgcatgtgttaatgtactgctgtggagaccagagatattag
attccctagagccagagtcacacctgagctaggttctcagaagcaaaccc
aggtcctctgcaaaaagtgtgcgttgttaactgctgagccatctctcctt
gcaacctcatgctatgccattttaacttccaataattaatgatccctttc
aaaccttcttcagttctgagaattaatttttaatagctgacataaatgag
attttatctgctaatttttttatgattgtaaatactttctgcatcatttt
ggggggtgtttttgctgattataagagcacttcacagatggtatgtgaaa
ttttgactgccctatgtgctacaagtattatttgccagttctttgcttcc
tggtcctctacatgagacatcttgtttgcactttttttcttttgtcctct
ctcctgtctttgtgttctccccatctgcttgaacctctctccctcttctt
ctcccgtcctcttgtctatcatctactactctctctatttcttggatggt
acctcccccttcatctatg
gaattcaggttctctgcaagagtagtgcatacttttaactgctggccacc
ttcctagctcctctggtcactttttaaatttgttttacatttactaatag
tgatctatggttttaattgctttcttatcctcaatctctctgtcaaagat
caaaaggttaagtcaaaaggatgcaccagttataaacaccagaataatgt
tgaataacctgtaactaaatttacctatcaagcgatttctaatagaagta
ctagggcaccttgagcttggtagaaactgcataatgtgctggaaacacac
acatatatttatatacactcatgttttatatttgtatatttatatgtata
aatgtgcgtacatgtatatatacatacatagttagataccggtatgggaa
aaatgaagcaatgaatgaaaaataaagatcaacacactagccagacagtc
ctaatgcgacagcttcctagagtcctggagaggttaagggaagagctatc
ttttgctttctcacacagccaggggtcaggccacctaaccaagtgtatct
tctggaattggtggacttagtaactctggaaccaagtccttatctgccct
gtcagccttgtctcggtttacttacctattaaacgagtgtaaccgtcctt
tcgctacagagctgtggctatgttatataagtgaatcctattaaggaccc
taatgcactgcttaggtgcagtcttgatatcgggattaaaatttttttcc
aagtggttcttaagcaccatttttgtctaatttgtctctaaagggcacta
gttaaataacagttatagatgaggctgtgacctgctaaccaatccacaga
cattgttcaattatttctctgttgtgagtgaaagatcattaatatgtatt
aaaagtacagtagggtatttttttctggttaaatatattttctttcttat
tttttttatttatagtattacttatttacatttccaatgctatcccaaag
tccccataccctcccctccccagtacgtaattatacttagttgtgaggac
tgttcccctaggatagatacgagggtctgaaagatgctcattgtcagact
gtgctcccagcatccaatcctgactcgatacccacctgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67219469_67220596
seq2: B6Ng01-301K19.b_44_1162 (reverse)

seq1  CATAGATGAA-GGGGAGGGAACATCAGAGAGAGAGAGAGAGAGAGAGAGA  49
      |||||||||| ||||||| | ||||  ||| | ||||||||  ||  |||
seq2  CATAGATGAAGGGGGAGGTACCATCCAAGAAATAGAGAGAG-TAG-TAGA  48

seq1  GAGAAGACAAGAGGAAGGGGAAGAAGAAGAGGGGAGAGAGTGTTCAAGCA  99
          ||||||||||| |||  ||||||||| ||||||||| |||||||||
seq2  TGATAGACAAGAGGACGGG--AGAAGAAGA-GGGAGAGAG-GTTCAAGCA  94

seq1  GGATGGGGAG-ACACAAAGACAGGGAGAGAGGGACAAAG-AAAAAAGTGC  147
       ||||||||| ||||||||||| |||||||||   |||| ||||||||||
seq2  -GATGGGGAGAACACAAAGACA-GGAGAGAGGACAAAAGAAAAAAAGTGC  142

seq1  AAACAAGATGTCTCATGGTAAGAGGGACCAGGAAGCAAAGAACTGGCAAA  197
      |||||||||||||||||   ||| ||||||||||||||||||||||||||
seq2  AAACAAGATGTCTCATG--TAGA-GGACCAGGAAGCAAAGAACTGGCAAA  189

seq1  TAAATACTTGTAGCACATAGGGCAGTCAAAATTTCACATACCATCTGTGA  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AATACTTGTAGCACATAGGGCAGTCAAAATTTCACATACCATCTGTGA  238

seq1  AGTGCTCTTATAATCAGCAAAAACACCCCCCAAAATGATGCAGAAAGTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTATAATCAGCAAAAACACCCCCCAAAATGATGCAGAAAGTAT  288

seq1  TTACAATCATAAAAAAATTAGCAGATAAAATCTCATTTATGTCAGCTATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCATAAAAAAATTAGCAGATAAAATCTCATTTATGTCAGCTATT  338

seq1  AAAAATTAATTCTCAGAACTGAAGAAGGTTTGAAAGGGATCATTAATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATTCTCAGAACTGAAGAAGGTTTGAAAGGGATCATTAATTAT  388

seq1  TGGAAGTTAAAATGGCATAGCATGAGGTTGCAAGGAGAGATGGCTCAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTAAAATGGCATAGCATGAGGTTGCAAGGAGAGATGGCTCAGCA  438

seq1  GTTAACAACGCACACTTTTTGCAGAGGACCTGGGTTTGCTTCTGAGAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAACGCACACTTTTTGCAGAGGACCTGGGTTTGCTTCTGAGAACC  488

seq1  TAGCTCAGGTGTGACTCTGGCTCTAGGGAATCTAATATCTCTGGTCTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGGTGTGACTCTGGCTCTAGGGAATCTAATATCTCTGGTCTCCA  538

seq1  CAGCAGTACATTAACACATGCATGCATGAATGAACACACACATGCACACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTACATTAACACATGCATGCATGAATGAACACACACATGCACACA  588

seq1  CAGACACACGCCTCTTAAAAAAATTGGCAATCCTTTTTAGAAGAGAAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACGCCTCTTAAAAAAATTGGCAATCCTTTTTAGAAGAGAAATG  638

seq1  TGTCAATACATACCCATCCAGAGCCTTAAAATTGTTTCCACTTTGACACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATACATACCCATCCAGAGCCTTAAAATTGTTTCCACTTTGACACA  688

seq1  GCTTATTTTTAGAAACACTCTGTTTTTGTTGTAAGATTTTTGTTTTTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTTAGAAACACTCTGTTTTTGTTGTAAGATTTTTGTTTTTATT  738

seq1  GTAAAATTTTTAAGAGTACATAACTTTGTCACAAGAAACACAAATGGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTTTAAGAGTACATAACTTTGTCACAAGAAACACAAATGGACT  788

seq1  TGGTGGAGAATGTGTCCTTATTACATGTTAGAGCATCTTCTGGGTATATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGAATGTGTCCTTATTACATGTTAGAGCATCTTCTGGGTATATG  838

seq1  CCCAGGAGTAGTATAGCTGGGTCCTCAGGTACTACTATGTCCAATTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTAGTATAGCTGGGTCCTCAGGTACTACTATGTCCAATTTTCT  888

seq1  GAGGAACCGCCGGACTGATTTCCAGAGTGGTTGTACCAGATTTGCAATCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACCGCCGGACTGATTTCCAGAGTGGTTGTACCAGATTTGCAATCC  938

seq1  CACCAGCAATAGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAACATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAATAGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAACATCT  988

seq1  GCTGTAACCTGAGTTTTTGATCTTAGCCATTCTGACTGATGTGAAGTGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACCTGAGTTTTTGATCTTAGCCATTCTGACTGATGTGAAGTGGA  1038

seq1  ATCTCAGGGTTCTTTTGATTGCATTTCCCTAATGACTAAGAATGTTGAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTTCTTTTGATTGCATTTCCCTAATGACTAAGAATGTTGAAC  1088

seq1  ATTTCTTTAGGTGCTGCTCAGTTGAGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGGTGCTGCTCAGTTGAGAATTC  1119

seq1: chr9_67092063_67093239
seq2: B6Ng01-301K19.g_68_1208

seq1  GAATTCAGGTTCTCTGCAAGAGTAGTGCATACTTTTAACTGCTGGCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTCTGCAAGAGTAGTGCATACTTTTAACTGCTGGCCACC  50

seq1  TTCCTAGCTCCTCTGGTCACTTTTTAAATTTGTTTTACATTTACTAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTCCTCTGGTCACTTTTTAAATTTGTTTTACATTTACTAATAG  100

seq1  TGATCTATGGTTTTAATTGCTTTCTTATCCTCAATCTCTCTGTCAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATGGTTTTAATTGCTTTCTTATCCTCAATCTCTCTGTCAAAGAT  150

seq1  CAAAAGGTTAAGTCAAAAGGATGCACCAGTTATAAACACCAGAATAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTTAAGTCAAAAGGATGCACCAGTTATAAACACCAGAATAATGT  200

seq1  TGAATAACCTGTAACTAAATTTACCTATCAAGCGATTTCTAATAGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACCTGTAACTAAATTTACCTATCAAGCGATTTCTAATAGAAGTA  250

seq1  CTAGGGCACCTTGAGCTTGGTAGAAACTGCATAATGTGCTGGAAACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCACCTTGAGCTTGGTAGAAACTGCATAATGTGCTGGAAACACAC  300

seq1  ACATATATTTATATACACTCATGTTTTATATTTGTATATTTATATGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTTATATACACTCATGTTTTATATTTGTATATTTATATGTATA  350

seq1  AATGTGCGTACATGTATATATACATACATAGTTAGATACCGGTATGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCGTACATGTATATATACATACATAGTTAGATACCGGTATGGGAA  400

seq1  AAATGAAGCAATGAATGAAAAATAAAGATCAACACACTAGCCAGACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCAATGAATGAAAAATAAAGATCAACACACTAGCCAGACAGTC  450

seq1  CTAATGCGACAGCTTCCTAGAGTCCTGGAGAGGTTAAGGGAAGAGCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCGACAGCTTCCTAGAGTCCTGGAGAGGTTAAGGGAAGAGCTATC  500

seq1  TTTTGCTTTCTCACACAGCCAGGGGTCAGGCCACCTAACCAAGTGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCTCACACAGCCAGGGGTCAGGCCACCTAACCAAGTGTATCT  550

seq1  TCTGGAATTGGTGGACTTAGTAACTCTGGAACCAAGTCCTTATCTGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTGGTGGACTTAGTAACTCTGGAACCAAGTCCTTATCTGCCCT  600

seq1  GTCAGCCTTGTCTCGGTTTACTTACCTATTAAACGAGTGTAACCGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTGTCTCGGTTTACTTACCTATTAAACGAGTGTAACCGTCCTT  650

seq1  TCGCTACAGAGCTGTGGCTATGTTATATAAGTGAATCCTATTAAGGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTACAGAGCTGTGGCTATGTTATATAAGTGAATCCTATTAAGGACCC  700

seq1  TAATGCACTGCTTAGGTGCAGTCTTGATATCGGGATTAAAATTTTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACTGCTTAGGTGCAGTCTTGATATCGGGATTAAAATTTTTTTCC  750

seq1  AAGTGGTTCTTAAGCACCATTTTTGTCTAATTTGTCTCT-AAGGGCACTA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTGGTTCTTAAGCACCATTTTTGTCTAATTTGTCTCTAAAGGGCACTA  800

seq1  GTTAAATAACAGTTATAGATGAGGCTGTGACCTGCTAACCAATCCACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAACAGTTATAGATGAGGCTGTGACCTGCTAACCAATCCACAGA  850

seq1  CATTGTTCAATTATTTCTCTGTTGTGAGTGAAAGATCATTAATATGTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAATTATTTCTCTGTTGTGAGTGAAAGATCATTAATATGTATT  900

seq1  AAAAGTACAGTAGGGTTATTTTTTTCTGGGTTAAATATAATTTTCTTTCT  949
      ||||||||||||||| ||||||||||| |||||||||| |||||||||||
seq2  AAAAGTACAGTAGGG-TATTTTTTTCT-GGTTAAATAT-ATTTTCTTTCT  947

seq1  TTATTTTTTTTTTATTTATTAGGTATTTACTTAATTTACATTTCCAATGC  999
         | ||||||||||||||   ||| |||||| |||||||||||||||||
seq2  ---TATTTTTTTTATTTAT--AGTA-TTACTT-ATTTACATTTCCAATGC  990

seq1  TATCCCAAAAGTCCCCCATACCCTCCCCTCCCCAGTACGGTTATTTATAC  1049
      |||||| ||||| ||||||||||||||||||||||||||  || ||||||
seq2  TATCCC-AAAGT-CCCCATACCCTCCCCTCCCCAGTACG--TAATTATAC  1036

seq1  TTAGTGGTGAAGGACTGTTTTCCCCCTAAGATAAAGAATACAGAAGGGGG  1099
      ||||| ||| |||||||||   |||||| ||||    |||| ||  ||| 
seq2  TTAGTTGTG-AGGACTGTT---CCCCTAGGATA---GATAC-GA--GGGT  1076

seq1  CTGGAGAGATGGCTCAGTGGTGCAGAGGACCTGGGTGTGCTCCCCAGCAT  1149
      || || |||| ||||| ||   ||||         |||||| ||||||||
seq2  CT-GAAAGAT-GCTCATTG--TCAGA--------CTGTGCT-CCCAGCAT  1113

seq1  CCACATCCTGACTC-ATAACCACCTGCAA  1177
      ||| |||||||||| ||| ||||||||||
seq2  CCA-ATCCTGACTCGATACCCACCTGCAA  1141