BAC Information

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BAC

Clone NameB6Ng01-302D02
Chromosome9 (Build37)
Map Location 68,913,141 - 69,088,105
singlet/doubletdoublet
Overlap geneRora
Upstream geneLOC100041451, 9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302D02.bB6Ng01-302D02.g
ACCGA096308GA096309
length3741,084
definitionB6Ng01-302D02.b B6Ng01-302D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,087,732 - 69,088,105)(68,913,141 - 68,914,228)
sequence
ccagatcaaacagttgccccaggtcttcaggacctgaatgcaggtcacgg
gggaagttgagttgttccttttggtcactgtgtaaactccatcactattt
tgttggcttttggatacttcgccctgtggttcctgtggggcagagtggca
ttcatagactctttagttacttattcgttctctttaatgtgttgtctttg
ccatgctaggagttgaagccaggaactcatgtatataagtcagatatcct
atcacacagctatttgaattcttggctcctattttcttgtttcttaaaaa
ttattattattattattattattattattattattattgtagcagtagtg
gtagtttgtaaggtgtgtatgtgt
gaattcaacttgtgaggtatctctgttgctagaatgttttcttagccttc
acaaagacttagatttggtatctaacaatgcaaaaatcagagcacagtgg
ttcacatttataatcccagcacctgagagctagaagcaggagaagaagga
gtttgacatcatcctccattacatagcaaatttcagctctgcctgggcta
ccacagaccttgccataaaaaatagtaattaaaataaaggcacagaccta
ggaggaaccacacccatttcaacaagtagtggccactcaggccactggta
caggcaatttcctacctaaaccttgggttagctttgtcattccaaggttt
gggattatttctagaattcagaaatggcactggacacactcttgctaaag
gagtcctcactagatgttaagtggtgtgtccgtagtcttctcagctcagg
taggaaagaatccatctgaaaggcagagcccctcatgctgacaccactct
ctccttgacacctttaagcctaaacttctctcctttagctcatgaggtgt
gctctgaataaggagggctgtgggacaagggaggaactcaggtcctagtg
ctgctgtcacctgctgatccctagagcattgtggtttcccccaagtcttc
aaaatgagcatgacagtgcctttgcaacgttattatgggactcactggta
agaatacagatgaaaccacagatgctagtcataacctccagataaccaaa
gatcttctcattatcatgccaactccctgggagcaaagacaggaaacatc
atttagaagctcccatttagtgacactgatgggtgttatgagttgggttg
aaagaggcctttagaaaacacatcagcagtgtttggtccacatcattctg
gcctggccttcgttgctgctgctgctgctgctgctgctgtactggggtgt
caggacatccttcctcacagagtcattctgcatgggatgctggtgctcag
atcattgccagccaccgaatgatatagttctctgacctaagaattttttc
aggcctcaccttatttttccctcttgggccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69087732_69088105
seq2: B6Ng01-302D02.b_51_424 (reverse)

seq1  ACACATACACACCTTACAAACTACCACTACTGCTACAATAATAATAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACACCTTACAAACTACCACTACTGCTACAATAATAATAATAA  50

seq1  TAATAATAATAATAATAATAATAATTTTTAAGAAACAAGAAAATAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAATAATTTTTAAGAAACAAGAAAATAGGAGC  100

seq1  CAAGAATTCAAATAGCTGTGTGATAGGATATCTGACTTATATACATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCAAATAGCTGTGTGATAGGATATCTGACTTATATACATGAGT  150

seq1  TCCTGGCTTCAACTCCTAGCATGGCAAAGACAACACATTAAAGAGAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTCAACTCCTAGCATGGCAAAGACAACACATTAAAGAGAACGA  200

seq1  ATAAGTAACTAAAGAGTCTATGAATGCCACTCTGCCCCACAGGAACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAACTAAAGAGTCTATGAATGCCACTCTGCCCCACAGGAACCACA  250

seq1  GGGCGAAGTATCCAAAAGCCAACAAAATAGTGATGGAGTTTACACAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAAGTATCCAAAAGCCAACAAAATAGTGATGGAGTTTACACAGTGA  300

seq1  CCAAAAGGAACAACTCAACTTCCCCCGTGACCTGCATTCAGGTCCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGAACAACTCAACTTCCCCCGTGACCTGCATTCAGGTCCTGAAG  350

seq1  ACCTGGGGCAACTGTTTGATCTGG  374
      ||||||||||||||||||||||||
seq2  ACCTGGGGCAACTGTTTGATCTGG  374

seq1: chr9_68913141_68914228
seq2: B6Ng01-302D02.g_67_1150

seq1  GAATTCAACTTGTGAGGTATCTCTGTTGCTAGAATGTTTTCTTAGCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGTGAGGTATCTCTGTTGCTAGAATGTTTTCTTAGCCTTC  50

seq1  ACAAAGACTTAGATTTGGTATCTAACAATGCAAAAATCAGAGCACAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTTAGATTTGGTATCTAACAATGCAAAAATCAGAGCACAGTGG  100

seq1  TTCACATTTATAATCCCAGCACCTGAGAGCTAGAAGCAGGAGAAGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTATAATCCCAGCACCTGAGAGCTAGAAGCAGGAGAAGAAGGA  150

seq1  GTTTGACATCATCCTCCATTACATAGCAAATTTCAGCTCTGCCTGGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATCATCCTCCATTACATAGCAAATTTCAGCTCTGCCTGGGCTA  200

seq1  CCACAGACCTTGCCATAAAAAATAGTAATTAAAATAAAGGCACAGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCTTGCCATAAAAAATAGTAATTAAAATAAAGGCACAGACCTA  250

seq1  GGAGGAACCACACCCATTTCAACAAGTAGTGGCCACTCAGGCCACTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACCACACCCATTTCAACAAGTAGTGGCCACTCAGGCCACTGGTA  300

seq1  CAGGCAATTTCCTACCTAAACCTTGGGTTAGCTTTGTCATTCCAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATTTCCTACCTAAACCTTGGGTTAGCTTTGTCATTCCAAGGTTT  350

seq1  GGGATTATTTCTAGAATTCAGAAATGGCACTGGACACACTCTTGCTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTATTTCTAGAATTCAGAAATGGCACTGGACACACTCTTGCTAAAG  400

seq1  GAGTCCTCACTAGATGTTAAGTGGTGTGTCCGTAGTCTTCTCAGCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCACTAGATGTTAAGTGGTGTGTCCGTAGTCTTCTCAGCTCAGG  450

seq1  TAGGAAAGAATCCATCTGAAAGGCAGAGCCCCTCATGCTGACACCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGAATCCATCTGAAAGGCAGAGCCCCTCATGCTGACACCACTCT  500

seq1  CTCCTTGACACCTTTAAGCCTAAACTTCTCTCCTTTAGCTCATGAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGACACCTTTAAGCCTAAACTTCTCTCCTTTAGCTCATGAGGTGT  550

seq1  GCTCTGAATAAGGAGGGCTGTGGGACAAGGGAGGAACTCAGGTCCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAATAAGGAGGGCTGTGGGACAAGGGAGGAACTCAGGTCCTAGTG  600

seq1  CTGCTGTCACCTGCTGATCCCTAGAGCATTGTGGTTTCCCCCAAGTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCACCTGCTGATCCCTAGAGCATTGTGGTTTCCCCCAAGTCTTC  650

seq1  AAAATGAGCATGACAGTGCCTTTGCAACGTTATTATGGGACTCACTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCATGACAGTGCCTTTGCAACGTTATTATGGGACTCACTGGTA  700

seq1  AGAATACAGATGAAACCACAGATGCTAGTCATAACCTCCAGATAACCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGATGAAACCACAGATGCTAGTCATAACCTCCAGATAACCAAA  750

seq1  GATCTTCTCATTATCATGCCAACTCCCTGGGAGCAAAGACAGGAAACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTCATTATCATGCCAACTCCCTGGGAGCAAAGACAGGAAACATC  800

seq1  ATTTAGAAGCTCCCATTTAGTGACACTGATGGGTGTTATGAGTTGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAGCTCCCATTTAGTGACACTGATGGGTGTTATGAGTTGGGTTG  850

seq1  AAAGAGGCCTTTAAGAAAACACATCAGCAGTGTTTGGTCCACATCATTCT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCTTT-AGAAAACACATCAGCAGTGTTTGGTCCACATCATTCT  899

seq1  GGCCTGG-CTTCGTTGCTGCTGCTGCTGCTGCTGCTGCTGTACTTGGGTG  949
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GGCCTGGCCTTCGTTGCTGCTGCTGCTGCTGCTGCTGCTGTACTGGGGTG  949

seq1  TCAGGACATCC-TCCTCACAGAGTCAATTCTGCAGTGGATGCTTGTGCTC  998
      ||||||||||| ||||||||||||| ||||||||  ||||||| ||||||
seq2  TCAGGACATCCTTCCTCACAGAGTC-ATTCTGCATGGGATGCTGGTGCTC  998

seq1  AGGATCATTGCCAGCCACCGAGTG-TATAGTTTCCTCTGCCCTAAAGAAA  1047
      | ||||||||||||||||||| || |||||||  ||||| ||| ||||| 
seq2  A-GATCATTGCCAGCCACCGAATGATATAGTT--CTCTGACCT-AAGAA-  1043

seq1  TTTTTTTCAGCCCTCA-CTTATTTTTCCCTCTTGGGCTTTTA  1088
       ||||||||| ||||| |||||||||||||||||||| ||||
seq2  -TTTTTTCAGGCCTCACCTTATTTTTCCCTCTTGGGCCTTTA  1084