BAC Information

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BAC

Clone NameB6Ng01-302E03
Chromosome9 (Build37)
Map Location 96,766,909 - 96,917,689
singlet/doubletdoublet
Overlap geneAcpl2, LOC19034, LOC667226, Spsb4, LOC100040254
Upstream geneXrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneSlc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E03.bB6Ng01-302E03.g
ACCGA096355GA096356
length1,0781,026
definitionB6Ng01-302E03.b B6Ng01-302E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,766,909 - 96,767,998)(96,916,666 - 96,917,689)
sequence
gaattcagcaagctagaagtccactttccagtccacttcagctatctctt
tctgacattctgggagaagtctgcttcagccaactgtatcactctgccct
tccggaagctctgggagcagccgcactgaaaccagtgttcttattgtaga
atgctaaccacacctggagagaggagacagcatacagttggcattgctac
ctctccaaaacctcttcaaaaacagctgctttttttaaaaattgtatttt
gcaagcaaactgagtccattgaaagtctcttaaaatgtcaaggaaatcca
ggtggtgctggtgcacacctttaatcccagcactcaggaggcagaggcca
gcctggtctacagaatgagttctagaacaaccagggctacacagagaaac
cctgtcaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaagaaacaaacaaacaacaacaaaagatcatgg
ctgtaaagctggaattgcaggtggagcacaacaaaggtcagagtgacaaa
agccatattttcaagcaataaataaatcaataaacaaaacaaaatgaaaa
aaaccttcacaaatcttaagatgtgcaaagtgaatctggcatgtggggaa
gcgggctcccatgcatgctgtgtttcttgctacttgcatttccagggctt
tgcttcgctggatgtctggaccagagcatgcaacctggccatggtaaggt
gttctgtctcatgaggcctttttcaggcagaaagcacactcgagagttct
agcaaactgtcggctcactgccagaccatctgtaccctgatcaagaaagg
actcgacaccaggtcctccatgggtcactgctagcagttgggggtagtta
cacaatggccttagactatgcttcagaaagctgcagctcaccccaaccga
cactggcagtgactggccgtgcagaatgagccttcagctcattgaatctg
caagtggagagccactccttagtgtctctatgtacggaccaatggatttt
gattcaagcttcaaaaatgttctcaaaa
gctttcagctccatcccgcggtgtgaccttgagcgattcttctaaggtcc
gctgctctgtgcttcccctcgccctcctcccctccccctttcttcccctt
ctcctggttcctctccctccctactccaggaattggtgtgaacatctctt
atccttccattcatctgcccctaacagttgttgagcctatctagatttag
aagagataaggggaaagttcacttcccactgtgccctgtggaaagcgact
aacccctgaggcttcctgtctgtttcctcactttggcacctctgtctttc
aactaaagcctgcagtttctattgctcagggtgatggaggatctttcaac
ctcgctgctccactcgctctcccaattggttttgggctgcccgataaacc
ctctatgcagaacaacaaaatgtcaaaagtgtggtatagacatcctttac
agacggccacagtttttgagacacacaccctgaatccatgtttcagattt
ccacagcaaggacggtaaaaagaatttaagccacttctggcaagctgcga
acaaaattagattcaccagctatgccatgcaaatatctcttcagttttca
tttctcttcgactttaaggatattcagtgacatagaaataaaatctgcaa
ggaaaaaccagaagaagtcaaaagtcacggcagagctgggaaagaaatgc
tacttactgcagtggcttcgtagcttccaattgggaaccgatttggggtg
tctgtgtgctgggagtggaacctagggctctgtgcatacaagataagcac
tccacccctaagctctagcctcagcttaaaatgtataaagaatcaagaca
aggaagagccccaaagggacaaagactacagacattttacccagagagag
tgaaccagaaattaacacatatgcgcccttacctcaataagaaaaacgtg
tgctaagccagaagattcagtttttcagatatcagattggccaaatagtt
aatggccattcactagcagaggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96766909_96767998
seq2: B6Ng01-302E03.b_46_1123

seq1  GAATTCAGCAAGCTAGAAGTCCACTTTCCAGTCCACTTCAGCTATCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAGCTAGAAGTCCACTTTCCAGTCCACTTCAGCTATCTCTT  50

seq1  TCTGACATTCTGGGAGAAGTCTGCTTCAGCCAACTGTATCACTCTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTCTGGGAGAAGTCTGCTTCAGCCAACTGTATCACTCTGCCCT  100

seq1  TCCGGAAGCTCTGGGAGCAGCCGCACTGAAACCAGTGTTCTTATTGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAAGCTCTGGGAGCAGCCGCACTGAAACCAGTGTTCTTATTGTAGA  150

seq1  ATGCTAACCACACCTGGAGAGAGGAGACAGCATACAGTTGGCATTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACCACACCTGGAGAGAGGAGACAGCATACAGTTGGCATTGCTAC  200

seq1  CTCTCCAAAACCTCTTCAAAAACAGCTGCTTTTTTTAAAAATTGTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAACCTCTTCAAAAACAGCTGCTTTTTTTAAAAATTGTATTTT  250

seq1  GCAAGCAAACTGAGTCCATTGAAAGTCTCTTAAAATGTCAAGGAAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAACTGAGTCCATTGAAAGTCTCTTAAAATGTCAAGGAAATCCA  300

seq1  GGTGGTGCTGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCCA  350

seq1  GCCTGGTCTACAGAATGAGTTCTAGAACAACCAGGGCTACACAGAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAATGAGTTCTAGAACAACCAGGGCTACACAGAGAAAC  400

seq1  CCTGTCAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  450

seq1  GAAAGAAAGAAAGAAAGAAGAAACAAACAAACAACAACAAAAGATCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAGAAACAAACAAACAACAACAAAAGATCATGG  500

seq1  CTGTAAAGCTGGAATTGCAGGTGGAGCACAACAAAGGTCAGAGTGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGCTGGAATTGCAGGTGGAGCACAACAAAGGTCAGAGTGACAAA  550

seq1  AGCCATATTTTCAAGCAATAAATAAATCAATAAACAAAACAAAATGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATTTTCAAGCAATAAATAAATCAATAAACAAAACAAAATGAAAA  600

seq1  AAACCTTCACAAATCTTAAGATGTGCAAAGTGAATCTGGCATGTGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCACAAATCTTAAGATGTGCAAAGTGAATCTGGCATGTGGGGAA  650

seq1  GCGGGCTCCCATGCATGCTGTGTTTCTTGCTACTTGCATTTCCAGGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTCCCATGCATGCTGTGTTTCTTGCTACTTGCATTTCCAGGGCTT  700

seq1  TGCTTCGCTGGATGTCTGGACCAGAGCATGCAACCTGGCCATGGTAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGCTGGATGTCTGGACCAGAGCATGCAACCTGGCCATGGTAAGGT  750

seq1  GTTCTGTCTCATGAGGCCTTTTTCAGGCAGAAAGCACACTCGAGAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTCATGAGGCCTTTTTCAGGCAGAAAGCACACTCGAGAGTTCT  800

seq1  AGCAAACTGTCGGCTCACTGCCAGACCATCTGTACCCTGATCAAGAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGTCGGCTCACTGCCAGACCATCTGTACCCTGATCAAGAAAGG  850

seq1  ACTCGACACCAGGTCCTCCATGGGTCACTGCTAGCAGTTGGGGGTAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGACACCAGGTCCTCCATGGGTCACTGCTAGCAGTTGGGGGTAGTTA  900

seq1  CACAATGGCCTTAGACTATGCTTCAGAAAGCTGCAGCCTCACCCCAACCG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACAATGGCCTTAGACTATGCTTCAGAAAGCTGCAG-CTCACCCCAACCG  949

seq1  ACACTGGCAGTGACTGGCGGTGCAGAATGAGCCTTCCAGCTCA-TGGATC  999
      |||||||||||||||||| |||||||||||||||| ||||||| || |||
seq2  ACACTGGCAGTGACTGGCCGTGCAGAATGAGCCTT-CAGCTCATTGAATC  998

seq1  TGGCCAAAGGTGGAGAGCCACTCCTAGGTGTCCTCTATGTACCGGGACCC  1049
      ||  |||  ||||||||||||||||  |||| ||||||||||  ||||| 
seq2  TG--CAA--GTGGAGAGCCACTCCTTAGTGT-CTCTATGTAC--GGACCA  1041

seq1  ATGGATTTTTGATTCAGAGCTCCAAAAAAAGGTTCTCAAAA  1090
      ||||| |||||||||| |||| |  ||||| ||||||||||
seq2  ATGGA-TTTTGATTCA-AGCTTC--AAAAATGTTCTCAAAA  1078

seq1: chr9_96916666_96917689
seq2: B6Ng01-302E03.g_73_1098 (reverse)

seq1  AAATCCTTCTTGCTAGTGAATGGCCATT-ACTATTT-GCCAATCTGATAT  48
      |||||||   |||||||||||||||||| ||||||| |||||||||||||
seq2  AAATCCT--CTGCTAGTGAATGGCCATTAACTATTTGGCCAATCTGATAT  48

seq1  CTGAAAAACTGAATCTTCTGGCTTTAGCACACGTTTTTCTTATTGAGGTA  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGAAAAACTGAATCTTCTGGC-TTAGCACACGTTTTTCTTATTGAGGTA  97

seq1  A-GGCGCATATGTGTT-ATTTCTGTTTCACTCTCTCTGGGTAAATTGTCT  146
      | |||||||||||||| ||||||| ||||||||||||||||||| |||||
seq2  AGGGCGCATATGTGTTAATTTCTGGTTCACTCTCTCTGGGTAAAATGTCT  147

seq1  GTAGTCTTTGT-CCTTTGGGGCTCTTCCTTGTCTTGATTCTTTATACATT  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTGTCCCTTTGGGGCTCTTCCTTGTCTTGATTCTTTATACATT  197

seq1  TTAAGCTGAGGCTAGAGCTTAGGGGTGGAGTGCTTATCTTGTATGCACAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGAGGCTAGAGCTTAGGGGTGGAGTGCTTATCTTGTATGCACAG  247

seq1  AGCCCTAGGTTCCACTCCCAGCACACAGACACCCCAAATCGGTTCCCAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGGTTCCACTCCCAGCACACAGACACCCCAAATCGGTTCCCAAT  297

seq1  TGGAAGCTACGAAGCCACTGCAGTAAGTAGCATTTCTTTCCCAGCTCTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTACGAAGCCACTGCAGTAAGTAGCATTTCTTTCCCAGCTCTGC  347

seq1  CGTGACTTTTGACTTCTTCTGGTTTTTCCTTGCAGATTTTATTTCTATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTTTTGACTTCTTCTGGTTTTTCCTTGCAGATTTTATTTCTATGT  397

seq1  CACTGAATATCCTTAAAGTCGAAGAGAAATGAAAACTGAAGAGATATTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATATCCTTAAAGTCGAAGAGAAATGAAAACTGAAGAGATATTTG  447

seq1  CATGGCATAGCTGGTGAATCTAATTTTGTTCGCAGCTTGCCAGAAGTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATAGCTGGTGAATCTAATTTTGTTCGCAGCTTGCCAGAAGTGGC  497

seq1  TTAAATTCTTTTTACCGTCCTTGCTGTGGAAATCTGAAACATGGATTCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTTTTTACCGTCCTTGCTGTGGAAATCTGAAACATGGATTCAG  547

seq1  GGTGTGTGTCTCAAAAACTGTGGCCGTCTGTAAAGGATGTCTATACCACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTCTCAAAAACTGTGGCCGTCTGTAAAGGATGTCTATACCACA  597

seq1  CTTTTGACATTTTGTTGTTCTGCATAGAGGGTTTATCGGGCAGCCCAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACATTTTGTTGTTCTGCATAGAGGGTTTATCGGGCAGCCCAAAA  647

seq1  CCAATTGGGAGAGCGAGTGGAGCAGCGAGGTTGAAAGATCCTCCATCACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGGAGAGCGAGTGGAGCAGCGAGGTTGAAAGATCCTCCATCACC  697

seq1  CTGAGCAATAGAAACTGCAGGCTTTAGTTGAAAGACAGAGGTGCCAAAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATAGAAACTGCAGGCTTTAGTTGAAAGACAGAGGTGCCAAAGT  747

seq1  GAGGAAACAGACAGGAAGCCTCAGGGGTTAGTCGCTTTCCACAGGGCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGACAGGAAGCCTCAGGGGTTAGTCGCTTTCCACAGGGCACA  797

seq1  GTGGGAAGTGAACTTTCCCCTTATCTCTTCTAAATCTAGATAGGCTCAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGTGAACTTTCCCCTTATCTCTTCTAAATCTAGATAGGCTCAAC  847

seq1  AACTGTTAGGGGCAGATGAATGGAAGGATAAGAGATGTTCACACCAATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAGGGGCAGATGAATGGAAGGATAAGAGATGTTCACACCAATTC  897

seq1  CTGGAGTAGGGAGGGAGAGGAACCAGGAGAAGGGGAAGAAAGGGGGAGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAGGGAGGGAGAGGAACCAGGAGAAGGGGAAGAAAGGGGGAGGG  947

seq1  GAGGAGGGCGAGGGGAAGCACAGAGCAGCGGACCTTAGAAGAATCGCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCGAGGGGAAGCACAGAGCAGCGGACCTTAGAAGAATCGCTCA  997

seq1  AGGTCACACCGCGGGATGGAGCTGAAAGC  1024
      |||||||||||||||||||||||||||||
seq2  AGGTCACACCGCGGGATGGAGCTGAAAGC  1026