BAC Information

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BAC

Clone NameB6Ng01-302E16
Chromosome9 (Build37)
Map Location 110,515,725 - 110,698,663
singlet/doubletdoublet
Overlap geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549
Upstream geneEG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream geneTessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E16.bB6Ng01-302E16.g
ACCGA096379GA096380
length1,1271,141
definitionB6Ng01-302E16.b B6Ng01-302E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,697,562 - 110,698,663)(110,515,725 - 110,516,852)
sequence
gaattctctttgtaggggagttttttgttgtttctcccgccccatacttt
gagcctgttctagaatagaacatgctgggatgctattctgcccattagac
ccagacgcagggaaagctgactgaagtggtacaggacccaaagtgtcgag
tctttataacacatcgtcaagtaaagctctgacatctgcaagctaaacaa
ggtgagagctgtcaaacgaaccggtgaggctggctgcttctattatcaag
agaggtccgaggctgctaagagggcaggagattacaaagttccccaatgt
gaccccatttaaattatccttgctttccccaaatcagtgccttaactctc
atgtcagaacctcgtgaagctgttcatttgtgttgaagctgaagccacct
caaagattaagcaggacatttaatgcaattacatcaaagttgcgattata
agaaacacgaaaatacttcagaaccttttaatcataaggttagaaattat
agaaccttttaatccaagagggtaagatcagagattgccggtcagtcaaa
tccctcagaggctggaggaggcacttgccatgcaaccctgaccacctgaa
ttgaacccccagaacccactaggagacacccaatctagacttttcctgag
ccccacacatacttctgtacacacacacacacacacacacacacacacat
gcatacatgcttgggtttggacctagtgggtcatgtgtgctagtgctctc
taccactgagatatatatatatatatatatatatatatatatatatttac
acactctgttttaggcccaataaatttgtctttagtatgggagtgtgggc
ctactgtaagactttagaacttctaggagctgcagatccaaaggtaaaat
ttgcacctttttcatggggccttttcttcataaatttccatcaagttgtt
tatgagaagattagaggcagggtcaaaggacccaaaggaaagccttgcct
tagatatgttggtttagagggaggcatgcaaggagtggaaatactggtac
aagaggaatgaaagcccaggttcagaagctgctactcttctttctcttcc
tcacccccggtccccgccttccaaaag
gaattctggatctctggctgcctgatattttactgagtggcatgcatatt
acaggggagactgtgatcagtctcaaggcaagctgtgtgacacacttgta
agcccagtgctcatgagcctgaggcagaaggaactgcaaatcaaaataga
gtttcttatgggttttgtttcagtttttctctagaaaagagggagggggg
tctatttactcagccccacctcccatacagccagaggagaggaaagaaat
agcaaatatatatgtaaagcctttctaactaaccatctctggacaatcca
aaaggcactttttttctgaagcaagtataagcagagggacttgcagggct
tcctcaacacagagtcttggcaagagagaactgcagaatagagcttgggt
atcaaaaactgcattactctaaacccctagtgaaaatgtgaacagggctt
ggagagaaggcttactggttaagagcacttaactgtcctgcagtggacct
gagtcaatttccagaagcacattgaatgggtcacatccgagtctagttcc
gagggaatctgagcctctgcttctgtggatgcccacactcagtacacata
cctacacatgcacacgcacacatattcataattaaagataataaaaatag
ggactagagccgggcagtggtgctgtgcacctttaatcccagctctcagg
gggggcagaggttagtgaatctctgtggatctctgcctggtgtagacacc
cagttcccgaacagccaaggctacataaccctgtctcaaaaaatacctgt
tgggctctaagctgagcagatataactctaggtataaattcagatgtata
taaataaatcttttttttttaattagaacataatagcaccagctgatatt
cctagaatatgaaagtttgtgttccaagaggaatgttcataattattttt
ttttccatgggaagggcattctagttatgcacatggccttgtatgctggg
gctgatagctcatggaccttcttgttcttgcctgggttagagtaaattaa
gggtatcctctccttgccatgccctagaaaggtgtatttctgactttctg
gcccctttgtaaaaggttatgactggatctagcatctacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110697562_110698663
seq2: B6Ng01-302E16.b_48_1174 (reverse)

seq1  CTTTTGGGA-GCGGGG-CCGGGGGTGA-GAAGAGAA--GAGAGTAGCAGG  45
      ||||||| | |||||| |||||||||| ||||||||   |||||||||| 
seq2  CTTTTGGAAGGCGGGGACCGGGGGTGAGGAAGAGAAAGAAGAGTAGCAGC  50

seq1  CTCTGAACCTGG--CTTCATTCCTCTTGTA-CAGTATTT-CACT-CTTGC  90
       |||||||||||   ||||||||||||||| |||||||| |||| |||||
seq2  TTCTGAACCTGGGCTTTCATTCCTCTTGTACCAGTATTTCCACTCCTTGC  100

seq1  ATGCCT-CCTCTAAACC-ACAT-TCTAA-GCAAGGCTTTC--TTTGGTCC  134
      |||||| |||||||||| |||| ||||| |||||||||||  || |||||
seq2  ATGCCTCCCTCTAAACCAACATATCTAAGGCAAGGCTTTCCTTTGGGTCC  150

seq1  TTTG-CCCTGCCTCTAATCTTTCTCATAAAC-ACTTGATGGAAATTTATG  182
      |||| |||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TTTGACCCTGCCTCTAATC-TTCTCATAAACAACTTGATGGAAATTTATG  199

seq1  AAGAAA--GGCCCATG-AAAAGGTGCAAATTT--ACTTTGGATCTGCAGC  227
      ||||||  | |||||| |||||||||||||||   |||||||||||||||
seq2  AAGAAAAGGCCCCATGAAAAAGGTGCAAATTTTACCTTTGGATCTGCAGC  249

seq1  TCCTAGAAGTTCTAAAGTCTTACAGTAGG-CCACACT-CCATACTAAAGA  275
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TCCTAGAAGTTCTAAAGTCTTACAGTAGGCCCACACTCCCATACTAAAGA  299

seq1  C-AATTTATTGGGCCTAAAACAGAGTGTGTAAATATATATATATATATAT  324
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATTGGGCCTAAAACAGAGTGTGTAAATATATATATATATATAT  349

seq1  ATATATATATATATATATCTCAGTGGTAGAGAGCACTAGCACACATGACC  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATCTCAGTGGTAGAGAGCACTAGCACACATGACC  399

seq1  CACTAGGTCCAAACCCAAGCATGTATGCATGTGTGTGTGTGTGTGTGTGT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTCCAAACCCAAGCATGTATGCATGTGTGTGTGTGTGTGTGTGT  449

seq1  GTGTGTGTGTACAGAAGTATGTGTGGGGCTCAGGAAAAGTCTAGATTGGG  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTACAGAAGTATGTGTGGGGCTCAGGAAAAGTCTAGATTGGG  499

seq1  TGTCTCCTAGTGGGTTCTGGGGGTTCAATTCAGGTGGTCAGGGTTGCATG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTAGTGGGTTCTGGGGGTTCAATTCAGGTGGTCAGGGTTGCATG  549

seq1  GCAAGTGCCTCCTCCAGCCTCTGAGGGATTTGACTGACCGGCAATCTCTG  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCCTCCTCCAGCCTCTGAGGGATTTGACTGACCGGCAATCTCTG  599

seq1  ATCTTACCCTCTTGGATTAAAAGGTTCTATAATTTCTAACCTTATGATTA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCCTCTTGGATTAAAAGGTTCTATAATTTCTAACCTTATGATTA  649

seq1  AAAGGTTCTGAAGTATTTTCGTGTTTCTTATAATCGCAACTTTGATGTAA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTGAAGTATTTTCGTGTTTCTTATAATCGCAACTTTGATGTAA  699

seq1  TTGCATTAAATGTCCTGCTTAATCTTTGAGGTGGCTTCAGCTTCAACACA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAAATGTCCTGCTTAATCTTTGAGGTGGCTTCAGCTTCAACACA  749

seq1  AATGAACAGCTTCACGAGGTTCTGACATGAGAGTTAAGGCACTGATTTGG  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGCTTCACGAGGTTCTGACATGAGAGTTAAGGCACTGATTTGG  799

seq1  GGAAAGCAAGGATAATTTAAATGGGGTCACATTGGGGAACTTTGTAATCT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAGGATAATTTAAATGGGGTCACATTGGGGAACTTTGTAATCT  849

seq1  CCTGCCCTCTTAGCAGCCTCGGACCTCTCTTGATAATAGAAGCAGCCAGC  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTCTTAGCAGCCTCGGACCTCTCTTGATAATAGAAGCAGCCAGC  899

seq1  CTCACCGGTTCGTTTGACAGCTCTCACCTTGTTTAGCTTGCAGATGTCAG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGGTTCGTTTGACAGCTCTCACCTTGTTTAGCTTGCAGATGTCAG  949

seq1  AGCTTTACTTGACGATGTGTTATAAAGACTCGACACTTTGGGTCCTGTAC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTTGACGATGTGTTATAAAGACTCGACACTTTGGGTCCTGTAC  999

seq1  CACTTCAGTCAGCTTTCCCTGCGTCTGGGTCTAATGGGCAGAATAGCATC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTCAGCTTTCCCTGCGTCTGGGTCTAATGGGCAGAATAGCATC  1049

seq1  CCAGCATGTTCTATTCTAGAACAGGCTCAAAGTATGGGGCGGGAGAAACA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTTCTATTCTAGAACAGGCTCAAAGTATGGGGCGGGAGAAACA  1099

seq1  ACAAAAAACTCCCCTACAAAGAGAATTC  1102
      ||||||||||||||||||||||||||||
seq2  ACAAAAAACTCCCCTACAAAGAGAATTC  1127

seq1: chr9_110515725_110516852
seq2: B6Ng01-302E16.g_65_1205

seq1  GAATTCTGGATCTCTGGCTGCCTGATATTTTACTGAGTGGCATGCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATCTCTGGCTGCCTGATATTTTACTGAGTGGCATGCATATT  50

seq1  ACAGGGGAGACTGTGATCAGTCTCAAGGCAAGCTGTGTGACACACTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAGACTGTGATCAGTCTCAAGGCAAGCTGTGTGACACACTTGTA  100

seq1  AGCCCAGTGCTCATGAGCCTGAGGCAGAAGGAACTGCAAATCAAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGCTCATGAGCCTGAGGCAGAAGGAACTGCAAATCAAAATAGA  150

seq1  GTTTCTTATGGGTTTTGTTTCAGTTTTTCTCTAGAAAAGAGGGAGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATGGGTTTTGTTTCAGTTTTTCTCTAGAAAAGAGGGAGGGGGG  200

seq1  TCTATTTACTCAGCCCCACCTCCCATACAGCCAGAGGAGAGGAAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACTCAGCCCCACCTCCCATACAGCCAGAGGAGAGGAAAGAAAT  250

seq1  AGCAAATATATATGTAAAGCCTTTCTAACTAACCATCTCTGGACAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATATATATGTAAAGCCTTTCTAACTAACCATCTCTGGACAATCCA  300

seq1  AAAGGCACTTTTTTTCTGAAGCAAGTATAAGCAGAGGGACTTGCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTTTTTTCTGAAGCAAGTATAAGCAGAGGGACTTGCAGGGCT  350

seq1  TCCTCAACACAGAGTCTTGGCAAGAGAGAACTGCAGAATAGAGCTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACACAGAGTCTTGGCAAGAGAGAACTGCAGAATAGAGCTTGGGT  400

seq1  ATCAAAAACTGCATTACTCTAAACCCCTAGTGAAAATGTGAACAGGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACTGCATTACTCTAAACCCCTAGTGAAAATGTGAACAGGGCTT  450

seq1  GGAGAGAAGGCTTACTGGTTAAGAGCACTTAACTGTCCTGCAGTGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGCTTACTGGTTAAGAGCACTTAACTGTCCTGCAGTGGACCT  500

seq1  GAGTCAATTTCCAGAAGCACATTGAATGGGTCACATCCGAGTCTAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATTTCCAGAAGCACATTGAATGGGTCACATCCGAGTCTAGTTCC  550

seq1  GAGGGAATCTGAGCCTCTGCTTCTGTGGATGCCCACACTCAGTACACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATCTGAGCCTCTGCTTCTGTGGATGCCCACACTCAGTACACATA  600

seq1  CCTACACATGCACACGCACACATATTCATAATTAAAGATAATAAAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATGCACACGCACACATATTCATAATTAAAGATAATAAAAATAG  650

seq1  GGACTAGAGCCGGGCAGTGGTGCTGTGCACCTTTAATCCCAGCTCTCA-G  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACTAGAGCCGGGCAGTGGTGCTGTGCACCTTTAATCCCAGCTCTCAGG  700

seq1  GGGGGCAGAGGTTAGTGAATCTCTGTGGATCTCTGCCTGGTGTAGACACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGAGGTTAGTGAATCTCTGTGGATCTCTGCCTGGTGTAGACACC  750

seq1  CAGTTCCCGAACAGCCAAGGCTACATAACCCTGTCTCAAAAAATACCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCGAACAGCCAAGGCTACATAACCCTGTCTCAAAAAATACCTGT  800

seq1  T-GGCTCTAAGCTGAGCAGATATAACTCTAGGTATAAATTCAGATGTATA  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTAAGCTGAGCAGATATAACTCTAGGTATAAATTCAGATGTATA  850

seq1  TAAATAAATC-TTTTTTTTTAATTAGAAACATAATAGCACCAGCTGATAT  897
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TAAATAAATCTTTTTTTTTTAATTAG-AACATAATAGCACCAGCTGATAT  899

seq1  TCCTAGAATATGAAAGTTTGTGTTCCAAGAGGAATGTTCATAATTA--TT  945
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TCCTAGAATATGAAAGTTTGTGTTCCAAGAGGAATGTTCATAATTATTTT  949

seq1  TTTTTCCATGGGAAGGGCATTCTAG-TATGCACATGG-CTTGTATGCTGG  993
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTTTTCCATGGGAAGGGCATTCTAGTTATGCACATGGCCTTGTATGCTGG  999

seq1  GGCTGATAGCTCAT-GACC-TCTTGGTCTTGCCT-GGTTAGAGT-AATTA  1039
      |||||||||||||| |||| ||||| |||||||| ||||||||| |||||
seq2  GGCTGATAGCTCATGGACCTTCTTGTTCTTGCCTGGGTTAGAGTAAATTA  1049

seq1  --GGTATCCTCTCCTGGCATTG--CTAGAAAGGTGTATTTCTGAATTTCT  1085
        ||||||||||||| ||  ||  |||||||||||||||||||| |||||
seq2  AGGGTATCCTCTCCTTGCCATGCCCTAGAAAGGTGTATTTCTGACTTTCT  1099

seq1  TGCCACTTTGGAAAAAGGGTATTAGTGGTCTTAGCATCTACGC  1128
       ||| |||| | |||||| ||| | |||   ||||||||||||
seq2  GGCCCCTTT-GTAAAAGGTTATGACTGGATCTAGCATCTACGC  1141