BAC Information

Click to search

BAC

Clone NameB6Ng01-303A09
Chromosome9 (Build37)
Map Location 100,569,536 - 100,570,618
singlet/doubletsinglet
Overlap geneStag1
Upstream geneDzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
Downstream geneLOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303A09.bB6Ng01-303A09.g
ACCGA096926GA096927
length1,1681,074
definitionB6Ng01-303A09.b B6Ng01-303A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagtcaacatcaaactaaatggtgagaaactggaagcattcccactaaa
atcagggactagacaaggctgcccgctttctccctacctattcaacattg
tacttgacgtcctagccagagcaattcgacaacaaaagcagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagcgaccctagaaattccaccagagaactcctaaacc
tgataaacagcttcaatgaagtaactggatataaaattaactcaaacaag
tcaatggcctttctctacacaaaggataaacagactgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaagtct
ctgaacaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattgtcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacaaattagaaaggtcaatctgcaaattcatctggaataacaaaaaacc
taggatatcgaaaactcttctcaaagataaaaaaacctctggtggaatca
ccatgcctgacctaaagctgtactacagaggaattgtgataaacctgcat
ggtactggtatagcgacagacaagtagaccaatggaatcgaattgaagac
ccagaaatgaacccacacacctctggtcacttgatctttaacaagggagc
taaaaccatccattggaaaaaagacagtattttcaacaaatggtgctggc
acaactggtggttatcatgtagaagaatgcaaattgatcatcctatctcc
tagtagtaagtcaatctagtggattagactcccacaataagaccagaaga
acactgaacttattacaggaaaaggtaggcaaaggtctgcaagaatatgg
ccaaggcaaatctggactaggacaatggctgcgtgtagattgagaatcgg
taatggaaacctccatta
gaattccctttcttaaagctatagttgttgttaatgatttcttatatgta
cacatgatttaaaacaaaagtattttttgttaagtaattttccccgaccc
tgcctccccaaaggatatgcataagtctttattcctggaagttgtgaatg
ggacttcggataatttctgcatattttaattaaggatttcaggtgaggtc
agtttggatcaggatgaagtctcaatacaatgaatgataagtcactttag
aagagactataggacatgcagagcatttttgacaagcagtgattaaagtt
atccaagccataagccagttagcagacctcgaacaggtaaggattctctt
tttaaggctgttgggaaaataaggctatgctcccactttgattttagact
tttgacctccagagttgtgagaccaatttggtgtttttgtttgtttgttt
gttttgttgtgtttctttgtttttgttttttaacttcataaagtcccata
caaggccttgagcttgctatatagccaagtatgattttgaatttcaacat
gtacaaccactggcttatatgttgtgggaattaactcaggacttcctcca
tgctaggcatactatcatttgaacgatattcccaacccaaattcttttaa
ctcagcagatttgtatctgttggttatagcagcacaagaaaacgaatgca
ggctcatatcatatatattattttgtacctttcagatttttactgtgaga
atctttttactggtatggatagactttttctttatttaaagatttattta
agtatgtgtttgcctacatgtatgtatgcatgtatgtatgtatgtacacc
atgcacatgcagtgtccaaggaagtgagaggagggtgtcatgctggttta
tggaactggattataggcagtcttgagtcactgtgtggtgtttaggacta
aacctgggttcctttgcagagcagcaagtgctcttaaccatgagcatctc
tcagccccaagtttgtcttttcaacatgcatagaatttcataggagttat
ttatgtatatgatatcatgtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100569536_100570618
seq2: B6Ng01-303A09.g_64_1137

seq1  GAATTCCCTTTCTTAAAGCTATAGTTGTTGTTAATGATTTCTTATATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCTTAAAGCTATAGTTGTTGTTAATGATTTCTTATATGTA  50

seq1  CACATGATTTAAAACAAAAGTATTTTTTGTTAAGTAATTTTCCCCGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATTTAAAACAAAAGTATTTTTTGTTAAGTAATTTTCCCCGACCC  100

seq1  TGCCTCCCCAAAGGATATGCATAAGTCTTTATTCCTGGAAGTTGTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCCAAAGGATATGCATAAGTCTTTATTCCTGGAAGTTGTGAATG  150

seq1  GGACTTCGGATAATTTCTGCATATTTTAATTAAGGATTTCAGGTGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCGGATAATTTCTGCATATTTTAATTAAGGATTTCAGGTGAGGTC  200

seq1  AGTTTGGATCAGGATGAAGTCTCAATACAATGAATGATAAGTCACTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGATCAGGATGAAGTCTCAATACAATGAATGATAAGTCACTTTAG  250

seq1  AAGAGACTATAGGACATGCAGAGCATTTTTGACAAGCAGTGATTAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTATAGGACATGCAGAGCATTTTTGACAAGCAGTGATTAAAGTT  300

seq1  ATCCAAGCCATAAGCCAGTTAGCAGACCTCGAACAGGTAAGGATTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCCATAAGCCAGTTAGCAGACCTCGAACAGGTAAGGATTCTCTT  350

seq1  TTTAAGGCTGTTGGGAAAATAAGGCTATGCTCCCACTTTGATTTTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTGTTGGGAAAATAAGGCTATGCTCCCACTTTGATTTTAGACT  400

seq1  TTTGACCTCCAGAGTTGTGAGACCAATTTGGTGTTTTTGTTTGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTCCAGAGTTGTGAGACCAATTTGGTGTTTTTGTTTGTTTGTTT  450

seq1  GTTTTGTTGTGTTTCTTTGTTTTTGTTTTTTAACTTCATAAAGTCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTGTTTCTTTGTTTTTGTTTTTTAACTTCATAAAGTCCCATA  500

seq1  CAAGGCCTTGAGCTTGCTATATAGCCAAGTATGATTTTGAATTTCAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTTGAGCTTGCTATATAGCCAAGTATGATTTTGAATTTCAACAT  550

seq1  GTACAACCACTGGCTTATATGTTGTGGGAATTAACTCAGGACTTCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACCACTGGCTTATATGTTGTGGGAATTAACTCAGGACTTCCTCCA  600

seq1  TGCTAGGCATACTATCATTTGAACGATATTCCCAACCCAAATTCTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGCATACTATCATTTGAACGATATTCCCAACCCAAATTCTTTTAA  650

seq1  CTCAGCAGATTTGTATCTGTTGGTTATAGCAGCACAAGAAAACGAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGATTTGTATCTGTTGGTTATAGCAGCACAAGAAAACGAATGCA  700

seq1  GGCTCATATCATATATATTATTTTGTACCTTTCAGATTTTTACTGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATATCATATATATTATTTTGTACCTTTCAGATTTTTACTGTGAGA  750

seq1  ATCTTTTTACTGGTATGGATAGACTTTTTCTTTATTTAAAGATTTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTACTGGTATGGATAGACTTTTTCTTTATTTAAAGATTTATTTA  800

seq1  AGTATGTGTTTGCCTACATGTATGTATGCATGTATGTATGTATGTACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGTTTGCCTACATGTATGTATGCATGTATGTATGTATGTACACC  850

seq1  ATGCACATGCAGTGTCCAAGGAAGTGAGAGGAGGGTGTCAGGCTGGTTTA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGCACATGCAGTGTCCAAGGAAGTGAGAGGAGGGTGTCATGCTGGTTTA  900

seq1  TGGAACTGGATTATAGGCAGTCTTGAGTCACTGTGTGGGTGTTTGGAACT  950
      |||||||||||||||||||||||||||||||||||| ||||||| | |||
seq2  TGGAACTGGATTATAGGCAGTCTTGAGTCACTGTGT-GGTGTTTAGGACT  949

seq1  AAACCTGGG-TCCTTTGCAAGAGCAGCAAGTGCTCTTAACCATTGAGCCA  999
      ||||||||| |||||||| ||||||||||||||||||||||| |||| ||
seq2  AAACCTGGGTTCCTTTGC-AGAGCAGCAAGTGCTCTTAACCA-TGAG-CA  996

seq1  TCTCTCCAGCCCCAAGTTTTGTTCTTTTAAACAATTGCATAGTATTTTCA  1049
      ||||| |||||||||||||   |||||| ||||  ||||||| | |||||
seq2  TCTCT-CAGCCCCAAGTTT--GTCTTTTCAACA--TGCATAG-AATTTCA  1040

seq1  TAGGA-TTATTTATGTATATGATATCCATGTATGA  1083
      ||||| ||||||||||||||||||| |||||||||
seq2  TAGGAGTTATTTATGTATATGATAT-CATGTATGA  1074