BAC Information

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BAC

Clone NameB6Ng01-303G05
Chromosome9 (Build37)
Map Location 70,112,200 - 70,318,049
singlet/doubletdoublet
Overlap geneMyo1e, Ccnb2, Rnf111
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneSltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303G05.bB6Ng01-303G05.g
ACCGA097200GA097201
length1,111816
definitionB6Ng01-303G05.b B6Ng01-303G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,112,200 - 70,113,314)(70,317,244 - 70,318,049)
sequence
gaattcattggacacacatttacaaagctgtttatgtgcttggctctttg
ttagaatatgccaggcacagggttgaggcaaagtcagcttcaaatggctt
ccgatggtagagagaaagaggtataaataaactgagtatgatgtaggaat
agaaaggagaagattccttggagtctgtggctggtgaagaggcggcgtgc
gccttaggtcctcacagactagatagagacacagaacattcactctgggt
agcagtattatgaccaggggcagactttccagagactatcagctaggcta
gtggcaagaacctggggtgctggtgagggagctgggctttgcatgtgaat
ttcactgcataatcgtaaaggcatcttatcctagaggctgagacactgct
gtatggggtctaggcaagacaggaggacacagggaccttagaaagtccac
gtgcctccctgaatttgaaaagtggagtagagaggcaaaccaggctagca
ttcccaggatagataggtgcactctattagccaaaggaattaatttccaa
gttcagctagcaagtgtttcagtagggcagttaggcaacaagcatcacca
ctctgttcatatgcttttcatatttggaacaagaagcagggagattgcag
ggagatgaaggactaatggacactgggtgcaaattcactccatttccata
gggcgaggcacctgcatttgatgcaacagatgcaaacatctaagtgactc
cctaagaggcagggtcgttctatagaatccatgcatctcaaatgtcacta
tggttgtcagtttgacataatcaggggcaactgataaaaatctgtacatg
attagcagatgcatgattgaccaatgaaaagaattgatggtttgaggctc
tgtagacaggtcagacttctgcttagtcaggtgcaaacatgacttctcct
gttgtgattcactcactcctcctctttctcctctctctctcctctccctc
ttcttttctattatctactattatctatttgtttgtttcaggacaggatt
ctcttatgttagtcttggcttgttcttgtactccactctgtagtaccatg
ccttggccttg
gaattcatgtaactatctggctattctcaaattaaccattaacattttcc
ccctatgggtttgagatgacatcttgttatatgttgaattttgtttttgt
ttggatttactattggaattttttttaatttataaatttatttactattt
gtaggtgggtggttgggtgtgcgtgtgaaggtcaaaggataatttctggg
agttggctctctccttccactgttcagctcccaggggtagaactcagaac
agtactcttggtaacagagtgcttttacctgatgagccatctctccaact
tctctgaagggagttttagtgtcttgtgtacagaagaacacacgttgatt
atagaatctttatcattttcttaatatttttgcttatactttcaaatatg
ctttattctcaatttgcttatctatagaagatccagtgaaagttgttggg
atgtggttccagttccaaagcttatgccttttgtacccactcaccacttg
gtcattcctgcccagagttccacctcctccagctgcttttatccccttgc
tctgccccctacttaacatttctgaagttggattggttttgactatttag
gctcatttgttggctcttcaacaacaaaagatgctgtataacttctcatt
attttcatattaatttaagataaaattagttttaatactcttcaaggtaa
gattttttttgcctagtgattagcatacacatgcctttttaaataggttt
tgcctttttatttccaggaaagtattgatgaaagatgttgtgggtgatag
aaagcctccttcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70112200_70113314
seq2: B6Ng01-303G05.b_43_1153

seq1  GAATTCATTGGACACACATTTACAAAGCTGTTTATGTGCTTGGCTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGACACACATTTACAAAGCTGTTTATGTGCTTGGCTCTTTG  50

seq1  TTAGAATATGCCAGGCACAGGGTTGAGGCAAAGTCAGCTTCAAATGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATGCCAGGCACAGGGTTGAGGCAAAGTCAGCTTCAAATGGCTT  100

seq1  CCGATGGTAGAGAGAAAGAGGTATAAATAAACTGAGTATGATGTAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGTAGAGAGAAAGAGGTATAAATAAACTGAGTATGATGTAGGAAT  150

seq1  AGAAAGGAGAAGATTCCTTGGAGTCTGTGGCTGGTGAAGAGGCGGCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGAAGATTCCTTGGAGTCTGTGGCTGGTGAAGAGGCGGCGTGC  200

seq1  GCCTTAGGTCCTCACAGACTAGATAGAGACACAGAACATTCACTCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGTCCTCACAGACTAGATAGAGACACAGAACATTCACTCTGGGT  250

seq1  AGCAGTATTATGACCAGGGGCAGACTTTCCAGAGACTATCAGCTAGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATTATGACCAGGGGCAGACTTTCCAGAGACTATCAGCTAGGCTA  300

seq1  GTGGCAAGAACCTGGGGTGCTGGTGAGGGAGCTGGGCTTTGCATGTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGAACCTGGGGTGCTGGTGAGGGAGCTGGGCTTTGCATGTGAAT  350

seq1  TTCACTGCATAATCGTAAAGGCATCTTATCCTAGAGGCTGAGACACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCATAATCGTAAAGGCATCTTATCCTAGAGGCTGAGACACTGCT  400

seq1  GTATGGGGTCTAGGCAAGACAGGAGGACACAGGGACCTTAGAAAGTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGGTCTAGGCAAGACAGGAGGACACAGGGACCTTAGAAAGTCCAC  450

seq1  GTGCCTCCCTGAATTTGAAAAGTGGAGTAGAGAGGCAAACCAGGCTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCTGAATTTGAAAAGTGGAGTAGAGAGGCAAACCAGGCTAGCA  500

seq1  TTCCCAGGATAGATAGGTGCACTCTATTAGCCAAAGGAATTAATTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGATAGATAGGTGCACTCTATTAGCCAAAGGAATTAATTTCCAA  550

seq1  GTTCAGCTAGCAAGTGTTTCAGTAGGGCAGTTAGGCAACAAGCATCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTAGCAAGTGTTTCAGTAGGGCAGTTAGGCAACAAGCATCACCA  600

seq1  CTCTGTTCATATGCTTTTCATATTTGGAACAAGAAGCAGGGAGATTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCATATGCTTTTCATATTTGGAACAAGAAGCAGGGAGATTGCAG  650

seq1  GGAGATGAAGGACTAATGGACACTGGGTGCAAATTCACTCCATTTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAAGGACTAATGGACACTGGGTGCAAATTCACTCCATTTCCATA  700

seq1  GGGCGAGGCACCTGCATTTGATGCAACAGATGCAAACATCTAAGTGACT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGCGAGGCACCTGCATTTGATGCAACAGATGCAAACATCTAAGTGACTC  750

seq1  CCTAAGAGGCAGGGTCGTTCTATAGAATCCATGCATCTCAAATGTCACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGGCAGGGTCGTTCTATAGAATCCATGCATCTCAAATGTCACTA  800

seq1  TGGTTGTCAGTTTGACATAATCAGGGGCAACTGATAAAAATCTGTACATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCAGTTTGACATAATCAGGGGCAACTGATAAAAATCTGTACATG  850

seq1  ATTAGCAGATGCATGATTGACCAATGAAAAGAATTGATGGTTTGAGGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGATGCATGATTGACCAATGAAAAGAATTGATGGTTTGAGGCTC  900

seq1  TGTAGACAGGTCAGACTTCTGCTTAGTCAGGTGCAAACATGACTTCTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGGTCAGACTTCTGCTTAGTCAGGTGCAAACATGACTTCTCCT  950

seq1  GTTTGTGATTCACTCCACTCCTCCTCTTTCTCCTTCTCCTCCTCTCCCTC  999
      | |||||||||||| |||||||||||||||||||    || ||||| |  
seq2  G-TTGTGATTCACT-CACTCCTCCTCTTTCTCCT----CT-CTCTCTCCT  993

seq1  CTCCCTCTTCTTTTTCTATTTATCTACTATTTATCTATTTGTTTGTTTCA  1049
      |||||||||| ||||||| |||||||||| ||||||||||||||||||||
seq2  CTCCCTCTTC-TTTTCTA-TTATCTACTA-TTATCTATTTGTTTGTTTCA  1040

seq1  AGACAGGGATTCTC-TATG-TAGCCCTGGC-TGTTCTGGAACT-CACTCT  1095
       |||| |||||||| |||| ||| | |||| |||||| | ||| ||||||
seq2  GGACA-GGATTCTCTTATGTTAGTCTTGGCTTGTTCTTGTACTCCACTCT  1089

seq1  GTAGTACCATGC--TGGCCTTG  1115
      ||||||||||||  ||||||||
seq2  GTAGTACCATGCCTTGGCCTTG  1111

seq1: chr9_70317244_70318049
seq2: B6Ng01-303G05.g_67_882 (reverse)

seq1  GAGTGAAGGAGGC-TTCTATCA-CCACAACATC-TTCATCAATAC-TTCC  46
      ||||||||||||| |||||||| |||||||||| ||||||||||| ||||
seq2  GAGTGAAGGAGGCTTTCTATCACCCACAACATCTTTCATCAATACTTTCC  50

seq1  TGGAAAT-AAAAGGC-AAACCTATTT-AAAAGGCATGTGTATGCTAATCA  93
      ||||||| ||||||| |||||||||| |||||||||||||||||||||||
seq2  TGGAAATAAAAAGGCAAAACCTATTTAAAAAGGCATGTGTATGCTAATCA  100

seq1  CTAGGC-AAAAAAATCTTACCTTGAAGAGTATT-AAACTAATTTTATCTT  141
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CTAGGCAAAAAAAATCTTACCTTGAAGAGTATTAAAACTAATTTTATCTT  150

seq1  AAATTAATATGAAAATAATGAGAAGTTATACAGCATC-TTTGTTGTTGAA  190
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATTAATATGAAAATAATGAGAAGTTATACAGCATCTTTTGTTGTTGAA  200

seq1  GAGCCAACAAATGAGCCTAAATAGTCAAAACCAATCCAACTTCAGAAATG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACAAATGAGCCTAAATAGTCAAAACCAATCCAACTTCAGAAATG  250

seq1  TTAAGTAGGGGGCAGAGCAAGGGGATAAAAGCAGCTGGAGGAGGTGGAAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGGGGGCAGAGCAAGGGGATAAAAGCAGCTGGAGGAGGTGGAAC  300

seq1  TCTGGGCAGGAATGACCAAGTGGTGAGTGGGTACAAAAGGCATAAGCTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGGAATGACCAAGTGGTGAGTGGGTACAAAAGGCATAAGCTTT  350

seq1  GGAACTGGAACCACATCCCAACAACTTTCACTGGATCTTCTATAGATAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAACCACATCCCAACAACTTTCACTGGATCTTCTATAGATAAG  400

seq1  CAAATTGAGAATAAAGCATATTTGAAAGTATAAGCAAAAATATTAAGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAGAATAAAGCATATTTGAAAGTATAAGCAAAAATATTAAGAAA  450

seq1  ATGATAAAGATTCTATAATCAACGTGTGTTCTTCTGTACACAAGACACTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAGATTCTATAATCAACGTGTGTTCTTCTGTACACAAGACACTA  500

seq1  AAACTCCCTTCAGAGAAGTTGGAGAGATGGCTCATCAGGTAAAAGCACTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCTTCAGAGAAGTTGGAGAGATGGCTCATCAGGTAAAAGCACTC  550

seq1  TGTTACCAAGAGTACTGTTCTGAGTTCTACCCCTGGGAGCTGAACAGTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAAGAGTACTGTTCTGAGTTCTACCCCTGGGAGCTGAACAGTGG  600

seq1  AAGGAGAGAGCCAACTCCCAGAAATTATCCTTTGACCTTCACACGCACAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGCCAACTCCCAGAAATTATCCTTTGACCTTCACACGCACAC  650

seq1  CCAACCACCCACCTACAAATAGTAAATAAATTTATAAATTAAAAAAAATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACCCACCTACAAATAGTAAATAAATTTATAAATTAAAAAAAATT  700

seq1  CCAATAGTAAATCCAAACAAAAACAAAATTCAACATATAACAAGATGTCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTAAATCCAAACAAAAACAAAATTCAACATATAACAAGATGTCA  750

seq1  TCTCAAACCCATAGGGGGAAAATGTTAATGGTTAATTTGAGAATAGCCAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACCCATAGGGGGAAAATGTTAATGGTTAATTTGAGAATAGCCAG  800

seq1  ATAGTTACATGAATTC  806
      ||||||||||||||||
seq2  ATAGTTACATGAATTC  816