BAC Information

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BAC

Clone NameB6Ng01-303J11
Chromosome9 (Build37)
Map Location 73,225,848 - 73,387,518
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneLOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303J11.bB6Ng01-303J11.g
ACCGA097355GA097356
length1,1571,052
definitionB6Ng01-303J11.b B6Ng01-303J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,225,848 - 73,227,000)(73,386,484 - 73,387,518)
sequence
gaattctttgaaccctctctgtcttaagatgaaggtctggagattatttg
ctacaaatgagcatgggttgggaaaaaacaaacaaacacagaaaccaaac
aaaccaataaagctaaagggttctagggccgtgtgtccaaacccttgaca
ttgtgacaggcattgctgtttataaattcatgcttgagagacacacaata
gaagagtgggtgggagacgtgtgatcatttccctctgagaattacacact
accactataaagcagaaagttatctgacatttaaaacacattagcatttg
tagtacttaagttgggaagctctatgttcacacttgcccaatgactgcaa
ctggaatgttttcactagacttatacaatattatgactgttttaccatcc
tttttcctggccccttcctcctcagctaccttgtctacagcatgaagggg
aacggccatttgcagtccagttttctacttcattgctagagtaaaagcca
ggaagtgaggccaccgtggcagcggaacaacaaaaccctaacccaacaaa
acaagacccgggcttcactgattggttcttttccggagtgttcataagta
gtgataacctattcaacctctgcagtatagcacgcatcttgtctagaaga
gtgaggctgctagcaagaaccatttagtcacaccctgcatacaagttgct
ttagaactgtagtgtctgggggtcagttacagtcacgtctgttgtcatct
ctgtataaggtgcagaccttgtctaaaaaggacaacgtggtgaaatgtgt
ctatgggtggcagtgtcctgtgatgacaactctaagacagagaagcacat
cccaacccatggaaagcatttttattagcttctgttgggatttaagaaga
aggttattttcatgtgaaatacactgaaaggaaaaaaatttaacaaaata
gaggaatagttttattttaaatgcccacaactttacagtttgagtgtgaa
atatcttcatgggtacccataatgacaatttttcctagccagtgacaagt
gttggggagaattgtgaactttatggaacatgagcttagcctggagaata
catggctaatagcaatcaatggattgatataataccagccccacttctct
ggtcctg
gaattcaagccaatgagagactgtctcaaaaacaaaggtgggtgtagatt
ctgaggaatgacatcctaagattgtcacctggtcttcacattcactcaca
catgtgcatatacacctacacacacacacacacacacacacacacacaca
cacacacacacacacacacggatatgcgcatacaaaacagagcagcacac
ttttaataggatttggatgagcaagaagaatgagaggaaactagtgttgg
tggctctcgggaagctgctgtttcaaagcagaacgatttcaaagttcctg
ctcctcagatagcacattgttttccattctttgggcacaaaggccaaatt
gaatccagaatatcttatttctcttcagaaacccacaggagaaaataaca
catgcacgaatacaatgagttcagcaaagccagccataattggtgcccac
ctgtgtccaacccagctctaatcactggaaaagattagagaaagcccaag
cccctagcgcctttgagattgcagtctgcccagggggtgggtgggcatgg
aatgttttgaacaacaacaacaacaactttaaaaaagctctgctcagttt
gttggttggtgtgtgtttgtttccttcctgtctctatgctcaaaggttct
gatttagtaaggtggccgtagactcaaggcaacaatattttcaaatacat
tcacaggcctgaatcatttaacaaatagctacatgatgttataaataggc
acaccagttgaacatccctaaatcaaagttcttaaatctgaaatattcta
gactctgagccacagtttcggggtctccaggatggagaggtagtttctat
ggcataggcttttctagcagatgctaggccctgggttttgtgtaagtgaa
ttattcttatatgaatataaacagtgaattaatccctacagctgtattgt
ctttacctttatgtcagtccccaaataacctccctcagaagaaaacccaa
gattcaatttaaaaacctgcatcttccagtagctgaaacagttaaattaa
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73225848_73227000
seq2: B6Ng01-303J11.b_42_1198

seq1  GAATTCTTTGAACCCTCTCTGTCTTAAGATGAAGGTCTGGAGATTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAACCCTCTCTGTCTTAAGATGAAGGTCTGGAGATTATTTG  50

seq1  CTACAAATGAGCATGGGTTGGGAAAAAACAAACAAACACAGAAACCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATGAGCATGGGTTGGGAAAAAACAAACAAACACAGAAACCAAAC  100

seq1  AAACCAATAAAGCTAAAGGGTTCTAGGGCCGTGTGTCCAAACCCTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATAAAGCTAAAGGGTTCTAGGGCCGTGTGTCCAAACCCTTGACA  150

seq1  TTGTGACAGGCATTGCTGTTTATAAATTCATGCTTGAGAGACACACAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAGGCATTGCTGTTTATAAATTCATGCTTGAGAGACACACAATA  200

seq1  GAAGAGTGGGTGGGAGACGTGTGATCATTTCCCTCTGAGAATTACACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGGGTGGGAGACGTGTGATCATTTCCCTCTGAGAATTACACACT  250

seq1  ACCACTATAAAGCAGAAAGTTATCTGACATTTAAAACACATTAGCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATAAAGCAGAAAGTTATCTGACATTTAAAACACATTAGCATTTG  300

seq1  TAGTACTTAAGTTGGGAAGCTCTATGTTCACACTTGCCCAATGACTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTAAGTTGGGAAGCTCTATGTTCACACTTGCCCAATGACTGCAA  350

seq1  CTGGAATGTTTTCACTAGACTTATACAATATTATGACTGTTTTACCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGTTTTCACTAGACTTATACAATATTATGACTGTTTTACCATCC  400

seq1  TTTTTCCTGGCCCCTTCCTCCTCAGCTACCTTGTCTACAGCATGAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGGCCCCTTCCTCCTCAGCTACCTTGTCTACAGCATGAAGGGG  450

seq1  AACGGCCATTTGCAGTCCAGTTTTCTACTTCATTGCTAGAGTAAAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCATTTGCAGTCCAGTTTTCTACTTCATTGCTAGAGTAAAAGCCA  500

seq1  GGAAGTGAGGCCACCGTGGCAGCGGAACAACAAAACCCTAACCCAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGGCCACCGTGGCAGCGGAACAACAAAACCCTAACCCAACAAA  550

seq1  ACAAGACCCGGGCTTCACTGATTGGTTCTTTTCCGGAGTGTTCATAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCCGGGCTTCACTGATTGGTTCTTTTCCGGAGTGTTCATAAGTA  600

seq1  GTGATAACCTATTCAACCTCTGCAGTATAGCACGCATCTTGTCTAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACCTATTCAACCTCTGCAGTATAGCACGCATCTTGTCTAGAAGA  650

seq1  GTGAGGCTGCTAGCAAGAACCATTTAGTCACACCCTGCATACAAGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTGCTAGCAAGAACCATTTAGTCACACCCTGCATACAAGTTGCT  700

seq1  TTAGAACTGTAGTGTCTGGGGGTCAGTTACAGTCACGTCTGTTGTCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGTAGTGTCTGGGGGTCAGTTACAGTCACGTCTGTTGTCATCT  750

seq1  CTGTATAAGGTGCAGACCTTGTCTAAAAAGGACAACGTGGTGAAATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGGTGCAGACCTTGTCTAAAAAGGACAACGTGGTGAAATGTGT  800

seq1  CTATGGGTGGCAGTGTCCTGTGATGACAACTCTAAGACAGAGAAGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGTGGCAGTGTCCTGTGATGACAACTCTAAGACAGAGAAGCACAT  850

seq1  CCCAACCCATGGAAAGCATTTTTATTAGCTTCTGTTGGGATTTAAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCATGGAAAGCATTTTTATTAGCTTCTGTTGGGATTTAAGAAGA  900

seq1  AGGTTATTTTCATGTGAAAATACACTG-AAGGAAAAAAA-TTAACAAAAT  948
      |||||||||||||||| |||||||||| ||||||||||| ||||||||||
seq2  AGGTTATTTTCATGTG-AAATACACTGAAAGGAAAAAAATTTAACAAAAT  949

seq1  AGAGGAATAGTTTTA-TTTAAATGCCCACAAC-TTACAGTTTGAGTGTGA  996
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AGAGGAATAGTTTTATTTTAAATGCCCACAACTTTACAGTTTGAGTGTGA  999

seq1  AATATCTTCAATGGGTACCCATATGGACAATTTTTCCCTAGCCAGTGAC-  1045
      ||||||||| |||||||||||||  |||||||||| ||||||||||||| 
seq2  AATATCTTC-ATGGGTACCCATAATGACAATTTTT-CCTAGCCAGTGACA  1047

seq1  AGTGTTTGGGGAGATTGTTGAACTTTAT-GAACATGGAGCCTAG-CTGGA  1093
      |||| ||||||||| |  |||||||||| |||||| |||| ||| |||||
seq2  AGTG-TTGGGGAGAATTGTGAACTTTATGGAACAT-GAGCTTAGCCTGGA  1095

seq1  AGATACAGGGCT-ATAGCATTCCATTGTATGGATTATATACCAGCCCCAC  1142
        ||||| |||| |||||| | || || || |||   |||||||||||||
seq2  GAATACATGGCTAATAGCAAT-CAATGGATTGATATAATACCAGCCCCAC  1144

seq1  T--TCTGGTCCTG  1153
      |  ||||||||||
seq2  TTCTCTGGTCCTG  1157

seq1: chr9_73386484_73387518
seq2: B6Ng01-303J11.g_67_1118 (reverse)

seq1  GATT-ATTTAACTG-TTCAGCTACTG--AGATGCAG--TTTTAAA-TGAA  43
      |||| ||||||||| |||||||||||  ||||||||  ||||||| ||||
seq2  GATTAATTTAACTGTTTCAGCTACTGGAAGATGCAGGTTTTTAAATTGAA  50

seq1  TCTTGG--TTTC-TCTGAGG--AGTTA-TTGGGGACTGACAT-AAGGTAA  86
      ||||||  |||| |||||||   |||| |||||||||||||| |||||||
seq2  TCTTGGGTTTTCTTCTGAGGGAGGTTATTTGGGGACTGACATAAAGGTAA  100

seq1  AGAC-ATACAGCTGTA-GGATTAATTCACTGTTTATATTCATATTAAGAA  134
      |||| ||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AGACAATACAGCTGTAGGGATTAATTCACTGTTTATATTCATA-TAAGAA  149

seq1  TAATTCACTTACAC-AAACCCAGGGCCTAGCATCTGCTAGAAAAGCCTAT  183
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAATTCACTTACACAAAACCCAGGGCCTAGCATCTGCTAGAAAAGCCTAT  199

seq1  GCCATAG-AACTACCTCTCCATCCTGGAGACCCCGAAACTGTGGCTCAGA  232
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGAAACTACCTCTCCATCCTGGAGACCCCGAAACTGTGGCTCAGA  249

seq1  GTCTAGAATATTTCAGATTTAAGAACTTTGATTTAGGGATGTTCAACTGG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAATATTTCAGATTTAAGAACTTTGATTTAGGGATGTTCAACTGG  299

seq1  TGTGCCTATTTATAACATCATGTAGCTATTTGTTAAATGATTCAGGCCTG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTATTTATAACATCATGTAGCTATTTGTTAAATGATTCAGGCCTG  349

seq1  TGAATGTATTTGAAAATATTGTTGCCTTGAGTCTACGGCCACCTTACTAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATTTGAAAATATTGTTGCCTTGAGTCTACGGCCACCTTACTAA  399

seq1  ATCAGAACCTTTGAGCATAGAGACAGGAAGGAAACAAACACACACCAACC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACCTTTGAGCATAGAGACAGGAAGGAAACAAACACACACCAACC  449

seq1  AACAAACTGAGCAGAGCTTTTTTAAAGTTGTTGTTGTTGTTGTTCAAAAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTGAGCAGAGCTTTTTTAAAGTTGTTGTTGTTGTTGTTCAAAAC  499

seq1  ATTCCATGCCCACCCACCCCCTGGGCAGACTGCAATCTCAAAGGCGCTAG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGCCCACCCACCCCCTGGGCAGACTGCAATCTCAAAGGCGCTAG  549

seq1  GGGCTTGGGCTTTCTCTAATCTTTTCCAGTGATTAGAGCTGGGTTGGACA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGGCTTTCTCTAATCTTTTCCAGTGATTAGAGCTGGGTTGGACA  599

seq1  CAGGTGGGCACCAATTATGGCTGGCTTTGCTGAACTCATTGTATTCGTGC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGCACCAATTATGGCTGGCTTTGCTGAACTCATTGTATTCGTGC  649

seq1  ATGTGTTATTTTCTCCTGTGGGTTTCTGAAGAGAAATAAGATATTCTGGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTATTTTCTCCTGTGGGTTTCTGAAGAGAAATAAGATATTCTGGA  699

seq1  TTCAATTTGGCCTTTGTGCCCAAAGAATGGAAAACAATGTGCTATCTGAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTGGCCTTTGTGCCCAAAGAATGGAAAACAATGTGCTATCTGAG  749

seq1  GAGCAGGAACTTTGAAATCGTTCTGCTTTGAAACAGCAGCTTCCCGAGAG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAACTTTGAAATCGTTCTGCTTTGAAACAGCAGCTTCCCGAGAG  799

seq1  CCACCAACACTAGTTTCCTCTCATTCTTCTTGCTCATCCAAATCCTATTA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACACTAGTTTCCTCTCATTCTTCTTGCTCATCCAAATCCTATTA  849

seq1  AAAGTGTGCTGCTCTGTTTTGTATGCGCATATCCGTGTGTGTGTGTGTGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGCTGCTCTGTTTTGTATGCGCATATCCGTGTGTGTGTGTGTGT  899

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTATATGCAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTATATGCAC  949

seq1  ATGTGTGAGTGAATGTGAAGACCAGGTGACAATCTTAGGATGTCATTCCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAGTGAATGTGAAGACCAGGTGACAATCTTAGGATGTCATTCCT  999

seq1  CAGAATCTACACCCACCTTTGTTTTTGAGACAGTCTCTCATTGGCTTGAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTACACCCACCTTTGTTTTTGAGACAGTCTCTCATTGGCTTGAA  1049

seq1  TTC  1035
      |||
seq2  TTC  1052