BAC Information

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BAC

Clone NameB6Ng01-304I04
Chromosome9 (Build37)
Map Location 82,758,648 - 82,816,704
singlet/doubletdoublet
Overlap genePhip
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I04.bB6Ng01-304I04.g
ACCGA098050GA098051
length1,1971,176
definitionB6Ng01-304I04.b B6Ng01-304I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,815,509 - 82,816,704)(82,758,648 - 82,759,809)
sequence
gaattcagtttcttttatgcttaaataataatttctaattgattccattt
aaattttttaactgaattctcagcttgctaatagtatttcataaaaaaat
aatggggtaacttgtcttgtttttattgccgctcctctttgcagaggact
tgaatgataagagcatttaggagtctgagtgtgtttctgttaattatgag
atgtacaagattatagtaaatgatatgcctggaaagggctaacatgctgg
tcttggctccttcactgttgtctgattgcattggggacctcgactcctct
cctcccctcgctgctctcccattcctctgtctcctcctcttctagggaag
aatgaagctagagagagtactgtagagaattattaacacaggcaggaaga
cattgttcttttaaagaatactgactttctaggccttgtactttattctt
gtctagtacgttttaaaaccatgtgagtacttaaggtttcaagttaaata
gtccttgtataacctcgtgatcagcaaaagtgctgtgtatttggctagtt
tatgaagcacacagtgtgtatagtttagcaagcttactgattttctttga
cattggcatgaagaaagcatcattgtagctttattttagtgaatatttta
tgaaactacagtatataaatgccagttaattgctgaaagcatttagattg
tttatagaaatataaaatatgtgctatatgctatgcgtactaaaatttat
gacattacgtcattcccagtcctagagaaaataaagtaggtttgaagttc
tcttaaagttttaggtgttcatttaaatgtgtggtcccccttttccacca
ttaaattaccatagattatatataattagaattaacaaatttataaatgg
attttaattttcaagattaaaatttctttacttccatgtttcttagtact
agtatatattaaaaatataggatatgtgtgtgtatatacatatacataca
tacatacatacacacccacatatatatataacacacgcacacacacggta
tatattacacacacactacacacacgcacacatatatatatatatatata
tgtatatacataatatatattcctgtagtgcatattagtaggtactaact
tacgttccaagtggcttgcaggccctgggttagaagtttccttgtat
gaattcactgacagtaaagatcaaacatgcaacaacagccttgctacgtt
actcagtccttaccgatctgcaaagccaaactcccatttttccaatttga
agaccagacttccatttcatcatgcttagcatgtctaactggcctgaaag
ataataatgaattggattctccctacaactctcctccccatagtaaccaa
cttacggtaactgtgttaggttcagaactgcaaggtcctgtaattaagct
tggtcaggagctttgagctctggcttttaatctcactttttttttttttt
ttttttggttttttttttttttttggtttttcaagacagtgtttctctgt
atagccctggctgtcctggaactcacgttgtagaccaggctggcctcgaa
ctcagaaattcgcctgcctctgcctcccaagtgctgggattaaaggcgtg
tgccaccatgcccggctaatcccactatttttaaatactggggaggctta
gctaaaacattagttggaacaagaaaaatcagttcaaagtaatagtttgg
aactgatttttcttagctgattttgttttaaatattagatatattttaga
aaatatacctgaaaaacatttcttgtttcaactcagaagtttaccacaaa
ataatttaaatgcaatttcttatggagaataaatagaaacgtgaattatc
atcctgtttaaacttaactttaaagtcttacatataattctaatattctt
catcctaaaattgtagattcttaagagttcataaatataaatgccaacct
aaacaggtctgtaaggaaaataatgaaaaagttgtttttctttgttgttg
ttgctttaattgctgctgttgagacagtcacataaaatcagactgtcatt
gaacccttgatcatttgggattggaaacaatgcaccaccatgccaagctt
ataaaacagccattccttgcagatctgtatgaaagccttaacaaagcctt
tagcctttaggtaaatagtattgtaccatggtttttggacatgtggccct
ccataaactatcataacttattcagccagtgccagtaacttattatataa
cccaatacctctggttcttaggttagacaccacgaaaggccaagggccac
tcttatttttaacctcagtcacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82815509_82816704
seq2: B6Ng01-304I04.b_43_1239 (reverse)

seq1  ATACAAGAAAA--TCTAACACAGGGCCTGCAGGCACCACTGTGAACACTG  48
      ||||||| |||  |||||| ||||||||||| |  |||||  ||||   |
seq2  ATACAAGGAAACTTCTAACCCAGGGCCTGCAAG--CCACTTGGAAC---G  45

seq1  TTAGTTTAGTACTTACT-ATATGCACTACAGATATATATA-TATATATAT  96
      | || ||||||| |||| |||||||||||||  ||||||| ||| |||||
seq2  TAAG-TTAGTACCTACTAATATGCACTACAGGAATATATATTATGTATAT  94

seq1  ATATATATATATATATATATATGTGTGTGTGTGTGT-GTGTGTGTGTAAT  145
      | ||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  ACATATATATATATATATATATGTGTGCGTGTGTGTAGTGTGTGTGTAAT  144

seq1  ATATA-CGTGTGTGTGCGTGTG-TATATATATATGTGGGTGTGTATGTAT  193
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATACCGTGTGTGTGCGTGTGTTATATATATATGTGGGTGTGTATGTAT  194

seq1  GTATGTATGTATATGTATATACACACACATATCCTATATTTTTAATATAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATATGTATATACACACACATATCCTATATTTTTAATATAT  244

seq1  ACTAGTACTAAGAAACATGGAAGTAAAGAAATTTTAATCTTGAAAATTAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTACTAAGAAACATGGAAGTAAAGAAATTTTAATCTTGAAAATTAA  294

seq1  AATCCATTTATAAATTTGTTAATTCTAATTATATATAATCTATGGTAATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTATAAATTTGTTAATTCTAATTATATATAATCTATGGTAATT  344

seq1  TAATGGTGGAAAAGGGGGACCACACATTTAAATGAACACCTAAAACTTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGAAAAGGGGGACCACACATTTAAATGAACACCTAAAACTTTA  394

seq1  AGAGAACTTCAAACCTACTTTATTTTCTCTAGGACTGGGAATGACGTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTCAAACCTACTTTATTTTCTCTAGGACTGGGAATGACGTAAT  444

seq1  GTCATAAATTTTAGTACGCATAGCATATAGCACATATTTTATATTTCTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATTTTAGTACGCATAGCATATAGCACATATTTTATATTTCTAT  494

seq1  AAACAATCTAAATGCTTTCAGCAATTAACTGGCATTTATATACTGTAGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTAAATGCTTTCAGCAATTAACTGGCATTTATATACTGTAGTT  544

seq1  TCATAAAATATTCACTAAAATAAAGCTACAATGATGCTTTCTTCATGCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATATTCACTAAAATAAAGCTACAATGATGCTTTCTTCATGCCA  594

seq1  ATGTCAAAGAAAATCAGTAAGCTTGCTAAACTATACACACTGTGTGCTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAGAAAATCAGTAAGCTTGCTAAACTATACACACTGTGTGCTTC  644

seq1  ATAAACTAGCCAAATACACAGCACTTTTGCTGATCACGAGGTTATACAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAGCCAAATACACAGCACTTTTGCTGATCACGAGGTTATACAAG  694

seq1  GACTATTTAACTTGAAACCTTAAGTACTCACATGGTTTTAAAACGTACTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTAACTTGAAACCTTAAGTACTCACATGGTTTTAAAACGTACTA  744

seq1  GACAAGAATAAAGTACAAGGCCTAGAAAGTCAGTATTCTTTAAAAGAACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAATAAAGTACAAGGCCTAGAAAGTCAGTATTCTTTAAAAGAACA  794

seq1  ATGTCTTCCTGCCTGTGTTAATAATTCTCTACAGTACTCTCTCTAGCTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCTGCCTGTGTTAATAATTCTCTACAGTACTCTCTCTAGCTTC  844

seq1  ATTCTTCCCTAGAAGAGGAGGAGACAGAGGAATGGGAGAGCAGCGAGGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCTAGAAGAGGAGGAGACAGAGGAATGGGAGAGCAGCGAGGGG  894

seq1  AGGAGAGGAGTCGAGGTCCCCAATGCAATCAGACAACAGTGAAGGAGCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGAGTCGAGGTCCCCAATGCAATCAGACAACAGTGAAGGAGCCA  944

seq1  AGACCAGCATGTTAGCCCTTTCCAGGCATATCATTTACTATAATCTTGTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCATGTTAGCCCTTTCCAGGCATATCATTTACTATAATCTTGTA  994

seq1  CATCTCATAATTAACAGAAACACACTCAGACTCCTAAATGCTCTTATCAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATAATTAACAGAAACACACTCAGACTCCTAAATGCTCTTATCAT  1044

seq1  TCAAGTCCTCTGCAAAGAGGAGCGGCAATAAAAACAAGACAAGTTACCCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTCTGCAAAGAGGAGCGGCAATAAAAACAAGACAAGTTACCCC  1094

seq1  ATTATTTTTTTATGAAATACTATTAGCAAGCTGAGAATTCAGTTAAAAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTATGAAATACTATTAGCAAGCTGAGAATTCAGTTAAAAAA  1144

seq1  TTTAAATGGAATCAATTAGAAATTATTATTTAAGCATAAAAGAAACTGAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGAATCAATTAGAAATTATTATTTAAGCATAAAAGAAACTGAA  1194

seq1  TTC  1196
      |||
seq2  TTC  1197

seq1: chr9_82758648_82759809
seq2: B6Ng01-304I04.g_67_1242

seq1  GAATTCACTGACAGTAAAGATCAAACATGCAACAACAGCCTTGCTACGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACAGTAAAGATCAAACATGCAACAACAGCCTTGCTACGTT  50

seq1  ACTCAGTCCTTACCGATCTGCAAAGCCAAACTCCCATTTTTCCAATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCCTTACCGATCTGCAAAGCCAAACTCCCATTTTTCCAATTTGA  100

seq1  AGACCAGACTTCCATTTCATCATGCTTAGCATGTCTAACTGGCCTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACTTCCATTTCATCATGCTTAGCATGTCTAACTGGCCTGAAAG  150

seq1  ATAATAATGAATTGGATTCTCCCTACAACTCTCCTCCCCATAGTAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGAATTGGATTCTCCCTACAACTCTCCTCCCCATAGTAACCAA  200

seq1  CTTACGGTAACTGTGTTAGGTTCAGAACTGCAAGGTCCTGTAATTAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGTAACTGTGTTAGGTTCAGAACTGCAAGGTCCTGTAATTAAGCT  250

seq1  TGGTCAGGAGCTTTGAGCTCTGGCTTTTAATCTCACTTTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGAGCTTTGAGCTCTGGCTTTTAATCTCACTTTTTTTTTTTTTT  300

seq1  TTTTTTGGTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGTGTTTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGTGTTTCTCTGT  350

seq1  ATAGCCCTGGCTGTCCTGGAACTCACGTTGTAGACCAGGCTGGCCTCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAACTCACGTTGTAGACCAGGCTGGCCTCGAA  400

seq1  CTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  450

seq1  TGCCACCATGCCCGGCTAATCCCACTATTTTTAAATACTGGGGAGGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATGCCCGGCTAATCCCACTATTTTTAAATACTGGGGAGGCTTA  500

seq1  GCTAAAACATTAGTTGGAACAAGAAAAATCAGTTCAAAGTAATAGTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACATTAGTTGGAACAAGAAAAATCAGTTCAAAGTAATAGTTTGG  550

seq1  AACTGATTTTTCTTAGCTGATTTTGTTTTAAATATTAGATATATTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTTTCTTAGCTGATTTTGTTTTAAATATTAGATATATTTTAGA  600

seq1  AAATATACCTGAAAAACATTTCTTGTTTCAACTCAGAAGTTTACCACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACCTGAAAAACATTTCTTGTTTCAACTCAGAAGTTTACCACAAA  650

seq1  ATAATTTAAATGCAATTTCTTATGGAGAATAAATAGAAACGTGAATTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAATGCAATTTCTTATGGAGAATAAATAGAAACGTGAATTATC  700

seq1  ATCCTGTTTAAACTTAACTTTAAAGTCTTACATATAATTCTAATATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTTAAACTTAACTTTAAAGTCTTACATATAATTCTAATATTCTT  750

seq1  CATCCTAAAATTGTAGATTCTTAAGAGTTCATAAATATAAATGCCAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAAATTGTAGATTCTTAAGAGTTCATAAATATAAATGCCAACCT  800

seq1  AAACAGGTCTGT-AGGAAAATAATGAAAAAGTTG-TTTTCTTTGTTGTTG  848
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AAACAGGTCTGTAAGGAAAATAATGAAAAAGTTGTTTTTCTTTGTTGTTG  850

seq1  TTGCTTTAATTGCTGCTGTTGAGACAGTCACATAAAATCAAGACTGTCAT  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGCTTTAATTGCTGCTGTTGAGACAGTCACATAAAATC-AGACTGTCAT  899

seq1  TGAACCCTTGATCATTTGGGATT-GAAAC-ATGCACCACCATGCCAAGC-  945
      ||||||||||||||||||||||| ||||| ||||||||||||||||||| 
seq2  TGAACCCTTGATCATTTGGGATTGGAAACAATGCACCACCATGCCAAGCT  949

seq1  TATAAAACAG-CATT-CTTGCAGATCTGTATGAAAGCCTTAACAAAG-CT  992
      |||||||||| |||| ||||||||||||||||||||||||||||||| ||
seq2  TATAAAACAGCCATTCCTTGCAGATCTGTATGAAAGCCTTAACAAAGCCT  999

seq1  TTAG-CTTTAAGTAAATAGTTATGTACAAT-GTTTTTTGACATGTGGCCC  1040
      |||| ||||| |||||||||  ||||| || |||||| ||||||||||||
seq2  TTAGCCTTTAGGTAAATAGTATTGTACCATGGTTTTTGGACATGTGGCCC  1049

seq1  TCATAAAACTATCATAAACTTA-TCAG-CAGTG-CAGTAACTTA-TATAT  1086
      ||   |||||||||| |||||| |||| ||||| |||||||||| |||||
seq2  TCCATAAACTATCAT-AACTTATTCAGCCAGTGCCAGTAACTTATTATAT  1098

seq1  AAACCAATAACTCT-GTTCTAAG--TAGACACACAGAAAGG-CAAAGGCA  1132
      || |||||| |||| ||||| ||  |||||||   |||||| ||| ||| 
seq2  AACCCAATACCTCTGGTTCTTAGGTTAGACACCACGAAAGGCCAAGGGCC  1148

seq1  TCTTTATTTTTTAACCTTCAGTCACTCTGG  1162
       || |  ||||||||| |||||||| ||||
seq2  ACTCTTATTTTTAACC-TCAGTCAC-CTGG  1176