BAC Information

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BAC

Clone NameB6Ng01-305A06
Chromosome9 (Build37)
Map Location 17,282,584 - 17,283,754
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305A06.bB6Ng01-305A06.g
ACCGA098415GA098416
length1,2501,153
definitionB6Ng01-305A06.b B6Ng01-305A06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagtcaggtgggtcacgtccatctgacggcagaactgctggaat
tcttaaggagtttgggtttcccccaagcactccatgcctcaaggcaatgt
tgaatcacatgtgaggctttttcacctgttaaaggtgtggcaaacattac
accagagcaggtgtcaatagaaacatgtaaatattgatttctcccaaagg
aggaaatatgcgtgacatccatttgccagacctgtaatggcttgacgcca
cgggggtttacccctacatgaggagtagataaaatttgacaacaatctaa
aggcattattaagtaatcagaatcatttctaatagaaccaatccctctgg
cagctcgaggaataccagaggaaggaaaaacagccatgtaggcttggcaa
aattattagttgagctattctgtccccttgtgatatagaaaagacaactt
gaggacaagaacagagaacctgaagttcccctttataatcctgatctaca
actccagggtggacaataagaccttgtaggctgcaagagcctgcctctgt
ctctctagccacaaaatctgagaaggactcctgaggtccctggacgatct
ttgttagttgtccagtggcttcacctgctcaggagagcgccttccaggcc
ctaatagccttttcatctgattcagaactactaagaactggctccttgag
ctcatctagtgatgggtataggctccttctcctagaaacctccgctaatt
gatcttttttcttttccttccttctaatctctccccaggtattcttacct
ggcctaaacttttcctcgggttcaagacccgtggaaaggcctgtatactt
attttgtgtaccatatttcctctttgctcctactctctctccccgcttta
cttctgatagattgtcttgaatttcatccagaatccgccctgccttaacc
acttgttgacatgtgaaaaggaacaaaagggcttctaacactagagaaag
ttcaaggccaaacataccttgtaaagctatttcccactttacttctgata
agactgtcttgaattcatagaaagttcaaggccagacgtacctttttaaa
gctatttcccactttacatttgaatagacttgtcctgattccgtagaaag
tttcaggaaccgagactaactgttaggccttatactttacggtagcatgt
tccccagctgtagagaggtttctggtagaatatcacgcgcgcacatgtga


gaattcttctctccagagccataatgtgcagagcttacctgtaacatcag
atcaatgttacagcatgtagatgttagcaagttagagaagcacattgcca
tcatatcctttttctcatgtacctattatttcctcctgcaaacgtgctag
gagtgatgtattttcttccttagcagggtgttcacagatacctctctgct
tttggtgacagtttcttatgagtgttaagacataagttcatatacatcct
aaaactttctactacttcaaggttaaaacttgtggttttgagtctttgta
tttttcagggtgagattaattccaggactgattaaatgaaggcagaatag
aaggaaggagttatttagaaattaattatttaattcttgaccaaatcagt
gcttaataagctttctgactgcaagagtaatcctatgaataccaatatta
tttacacaattcatgttcttagagcatatacagaaggcttagcaattagg
agcagcatatgttgttttcattgtattaagttgatggttaataattacca
tcaactaaagcatattatacatattaaaaaccattccccaacagacatca
ttttctgaacttatactggctccagacagtctggaactgattcaattctt
tggtccatagaagaattaagaaacatttataacagatatcatgaaaacaa
actcaaatcacttcacctggagtccatttgtaaggaaacacatggacaac
atgcttcgatgctatcaggaagcctctgaaaatattataccaccatgaca
acctgcctgcttattaatagaaattggtatgtacagggagcagctccatt
taggaaagttggctcttaaaaacaaaatggcaattaatattaagaattgg
atgcctcaaatgtaatttagattaggtactagatgatgtaaataaattat
gtcatattagtgcagatgcagaattgttgcatatgtagtgcatattttat
gaaactatagaagagatgaaacatgttcctacatttatcatgatgtcatc
taccattagagttttagaagaaacagtatgtgcagcactgtgctaagcca
ttgaagattagaagaacgacattcaggcatctagcacagtgtgaaagccg
agc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17282584_17283754
seq2: B6Ng01-305A06.g_67_1219

seq1  GAATTCTTCTCTCCAGAGCCATAATGTGCAGAGCTTACCTGTAACATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTCCAGAGCCATAATGTGCAGAGCTTACCTGTAACATCAG  50

seq1  ATCAATGTTACAGCATGTAGATGTTAGCAAGTTAGAGAAGCACATTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTTACAGCATGTAGATGTTAGCAAGTTAGAGAAGCACATTGCCA  100

seq1  TCATATCCTTTTTCTCATGTACCTATTATTTCCTCCTGCAAACGTGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCTTTTTCTCATGTACCTATTATTTCCTCCTGCAAACGTGCTAG  150

seq1  GAGTGATGTATTTTCTTCCTTAGCAGGGTGTTCACAGATACCTCTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGTATTTTCTTCCTTAGCAGGGTGTTCACAGATACCTCTCTGCT  200

seq1  TTTGGTGACAGTTTCTTATGAGTGTTAAGACATAAGTTCATATACATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACAGTTTCTTATGAGTGTTAAGACATAAGTTCATATACATCCT  250

seq1  AAAACTTTCTACTACTTCAAGGTTAAAACTTGTGGTTTTGAGTCTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTCTACTACTTCAAGGTTAAAACTTGTGGTTTTGAGTCTTTGTA  300

seq1  TTTTTCAGGGTGAGATTAATTCCAGGACTGATTAAATGAAGGCAGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGGTGAGATTAATTCCAGGACTGATTAAATGAAGGCAGAATAG  350

seq1  AAGGAAGGAGTTATTTAGAAATTAATTATTTAATTCTTGACCAAATCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAGTTATTTAGAAATTAATTATTTAATTCTTGACCAAATCAGT  400

seq1  GCTTAATAAGCTTTCTGACTGCAAGAGTAATCCTATGAATACCAATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATAAGCTTTCTGACTGCAAGAGTAATCCTATGAATACCAATATTA  450

seq1  TTTACACAATTCATGTTCTTAGAGCATATACAGAAGGCTTAGCAATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATTCATGTTCTTAGAGCATATACAGAAGGCTTAGCAATTAGG  500

seq1  AGCAGCATATGTTGTTTTCATTGTATTAAGTTGATGGTTAATAATTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATATGTTGTTTTCATTGTATTAAGTTGATGGTTAATAATTACCA  550

seq1  TCAACTAAAGCATATTATACATATTAAAAACCATTCCCCAACAGACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAAGCATATTATACATATTAAAAACCATTCCCCAACAGACATCA  600

seq1  TTTTCTGAACTTATACTGGCTCCAGACAGTCTGGAACTGATTCAATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAACTTATACTGGCTCCAGACAGTCTGGAACTGATTCAATTCTT  650

seq1  TGGTCCATAGAAGAATTAAGAAACATTTATAACAGATATCATGAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATAGAAGAATTAAGAAACATTTATAACAGATATCATGAAAACAA  700

seq1  ACTCAAATCACTTCACCTGGAGTCCATTTGTAAGGAAACACATGGACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCACTTCACCTGGAGTCCATTTGTAAGGAAACACATGGACAAC  750

seq1  ATGCTTCGATGCTATCAGGAAGCCTCTGAAAATATTATACCACCATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCGATGCTATCAGGAAGCCTCTGAAAATATTATACCACCATGACA  800

seq1  ACCTGCCTGCTTATTAATAGAAATTGGTATGTACAGGGAGCAGCTCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTGCTTATTAATAGAAATTGGTATGTACAGGGAGCAGCTCCATT  850

seq1  TAGGAAAGTTGGCTCTTAAAAACAAAATGGCAATTAATATTAAGAATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGTTGGCTCTTAAAAACAAAATGGCAATTAATATTAAGAATTGG  900

seq1  ATGCCTCAAATGTAATTTAGATTAGGTACTAGATGATGTAAATAAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAAATGTAATTTAGATTAGGTACTAGATGATGTAAATAAATTAT  950

seq1  GTCATATTAGTGCAGATGCAGAA-TGTTGCAATATGTAGTGCATAATTTT  999
      ||||||||||||||||||||||| |||||| ||||||||||||| |||||
seq2  GTCATATTAGTGCAGATGCAGAATTGTTGC-ATATGTAGTGCAT-ATTTT  998

seq1  ATGAAACTATAGAAGAAGAATGAAAACATGTTCCTACATTTATCAATGAT  1049
      ||||||||||||||||   ||| ||||||||||||||||||||| |||||
seq2  ATGAAACTATAGAAGA--GATG-AAACATGTTCCTACATTTATC-ATGAT  1044

seq1  GGTCATCTAACCATTAGGAGTTTTAGAGAAAACAGTATGTGCCAAGCACT  1099
       ||||||| ||||||| ||||||||||  |||||||||||||  ||||||
seq2  -GTCATCT-ACCATTA-GAGTTTTAGAAGAAACAGTATGTGC--AGCACT  1089

seq1  GTGCTAAGCACATGAAAGATT-TAAGAAAGACAGAACATCAGGGCATCCT  1148
      ||||||||| |||  ||||||  ||||| ||||     ||| ||||| ||
seq2  GTGCTAAGC-CATTGAAGATTAGAAGAACGACA----TTCA-GGCAT-CT  1132

seq1  AGCACAGTGTGGAAAAGCAGAGC  1171
      |||||||||||  ||||| ||||
seq2  AGCACAGTGTG--AAAGCCGAGC  1153


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