BAC Information

Click to search

BAC

Clone NameB6Ng01-305C10
Chromosome9 (Build37)
Map Location 81,952,257 - 82,086,279
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
Downstream geneLOC100039085, Irak1bp1, Phip, LOC100039144, Hmgn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C10.bB6Ng01-305C10.g
ACCGA098515GA098516
length1,1631,147
definitionB6Ng01-305C10.b B6Ng01-305C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,085,110 - 82,086,279)(81,952,257 - 81,953,418)
sequence
gaattcagtgagaacaccctcccataggctcatatgtttgaatacttgac
cccaagtttgtggatctgtttgggaaggattaggtatgtcctgttgaagg
agttgtcacctgaagtggtcttcaggtgtctctctgtacagtgcttgccc
aggatacctacaattagctggacaaagagtctggaagttttggttccagt
gatgactgatttaaacctttcaagctctcagctacaacaccagcaccaca
cctgcctgcagccacgctccacaccaagatcgtctttgactctggaacca
tgagccctgaaatgaaatgcttttacaagttaccttcatcccagcatttt
gttatggcaatgaaaaatagctaagatacttcttctattttatctatact
aagcacgcccacaaattagccacaaggtgactgcaaggatactaatggca
tgaaacttttaaatcaaatatcacatttcccaaaactgccaggctttttt
tgacttctaatttatatgcatataatgtcctaatagaagtttaatttaac
tgaaataataacagaatgatttgttccatcttgcacataaaaggccactg
gaaaaatgtcaacactttgcaagtgacaaagcagaagttgctttaaattg
agattttgatttttaagaagaaaataaatagaactgttcaatctcaaatg
gtttcaaagcatttgtgaatttatatttatttcaaagaatggcacctctt
agaggtaagtattgatatattagaggatcaatgttacttcttttttttcc
ttttttcttttttattaggtattttcctcatttacatttcccatgctatc
ccaaaagtcccccattccctccctcctactcccctacccacccattgcaa
ctttctgaccctggcattaccctgtactggggcatataaactttgcaagt
tcaatgggcctctctttccagtgatggccaactaggccatctttgataca
tatgcagctagagtcaagagttctgggtactggttagtcatattgttgtc
cacctataggttgcagtcccttagcttctgggttttttctctagattctc
cattggggggccctgtgtgatcattcataactgaactgtcagcatccact
aatgggttgctag

gaattcatgggtactatggcaactcacacacacagagcttcacaggttaa
agccagatgtggtctcactgccgaagcagaaaagaacacaggctttcgct
cctaaccaagaagttatctgaaatgttcacttgtttgcaaaggcagaatt
agtcatctccaatggagtctctccagatattttcattgcaatataggata
ggtctcatgcccaagattttgagatcgtctcatggccattacaaatgaac
ttagtggtatttgtagacattttatctcataacgttttatttttgtctta
ttgtacttttgtttgcatatgttggtttctaatttttttgttttctgtat
ttttttacgtatgtgagtttattgctttattactatgggtaaaaggggca
gcatgccatcagatgaatagggagaaatggaaaatgtgaaaagagtagag
aatgaggaagtaaatcagagtaaattgtatgaaaactggtatttaataaa
ataagaagaaatataatttaacatgattactccaagactgattttgtaac
tttctggttgtgtacaataggaagacctgactcagtatttaattaattga
accagactgggccaatctttatttacaatgatgaaaatggagtgcatact
tgatcatggagaatgcaaacaagcccctcagatggttaccaaaaccaacc
tgaaggttgacatgaatcacacaaagagaatatagctataatgtttccag
gatcttttgaatgaaacaaactcttaatattatacttggaattgaggcct
tatacctattactcttcccatagaaatttagtttcaattttctagctcac
taaatacaccctatttttcattactggatgctgtggctgaaactgcatat
cttttgagtatctagaaatactcagaaaatatcaaccacagggggatcag
ggagaaacggagcaaagtccttgcaagaactaagttgttaggatgagaac
ggttagagcagattctaggtagaggaccaaacaaattacttgagaaagaa
atgcatgctttcttactacagctgaggtaggagtaagagatgttgcaaag
gtgaagattttgatccagctacaaatcccagctagtgtgggcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82085110_82086279
seq2: B6Ng01-305C10.b_43_1205 (reverse)

seq1  CTAGCAAACACATTAGTGGATGCTGACAG-TCAGTTAATGGATGGATCAC  49
      ||||| ||| ||||||||||||||||||| |||||| ||| || ||||||
seq2  CTAGC-AACCCATTAGTGGATGCTGACAGTTCAGTT-ATGAAT-GATCAC  47

seq1  A---GGGCCCCCAATGGAGGATCTAGAGAAAAAACCCAAGGAGCTAAAGG  96
      |   || |||||||||||| ||||||||||||||||| || ||||||  |
seq2  ACAGGGCCCCCCAATGGAGAATCTAGAGAAAAAACCC-AGAAGCTAA--G  94

seq1  GAACTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTAACCCA  146
      | ||||||| ||||||||||| |||||| |||| |||||||||| |||||
seq2  GGACTGCAA-CCTATAGGTGG-ACAACAATATG-ACTAACCAGT-ACCCA  140

seq1  GAACTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGGCCA  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAACTCTTGACTCTAGCTGCATATGTATC-AAAGATGGCCTAGTTGGCCA  189

seq1  TCACTGGAAAGAGAGGCCCATTGAACTTGCAAAGTTTATATGCCCCAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAAAGAGAGGCCCATTGAACTTGCAAAGTTTATATGCCCCAGTA  239

seq1  CAGGGTAATGCCAGGGTCAGAAAGTTGCAATGGGTGGGTAGGGGAGTAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAATGCCAGGGTCAGAAAGTTGCAATGGGTGGGTAGGGGAGTAGG  289

seq1  AGGGAGGGAATGGGGGACTTTTGGGATAGCATGGGAAATGTAAATGAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAATGGGGGACTTTTGGGATAGCATGGGAAATGTAAATGAGGA  339

seq1  AAATACCTAATAAAAAAGAAAAAAGGAAAAAAAAGAAGTAACATTGATCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAATAAAAAAGAAAAAAGGAAAAAAAAGAAGTAACATTGATCC  389

seq1  TCTAATATATCAATACTTACCTCTAAGAGGTGCCATTCTTTGAAATAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATATCAATACTTACCTCTAAGAGGTGCCATTCTTTGAAATAAAT  439

seq1  ATAAATTCACAAATGCTTTGAAACCATTTGAGATTGAACAGTTCTATTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCACAAATGCTTTGAAACCATTTGAGATTGAACAGTTCTATTTA  489

seq1  TTTTCTTCTTAAAAATCAAAATCTCAATTTAAAGCAACTTCTGCTTTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTAAAAATCAAAATCTCAATTTAAAGCAACTTCTGCTTTGTC  539

seq1  ACTTGCAAAGTGTTGACATTTTTCCAGTGGCCTTTTATGTGCAAGATGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAAGTGTTGACATTTTTCCAGTGGCCTTTTATGTGCAAGATGGA  589

seq1  ACAAATCATTCTGTTATTATTTCAGTTAAATTAAACTTCTATTAGGACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCATTCTGTTATTATTTCAGTTAAATTAAACTTCTATTAGGACAT  639

seq1  TATATGCATATAAATTAGAAGTCAAAAAAAGCCTGGCAGTTTTGGGAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATATAAATTAGAAGTCAAAAAAAGCCTGGCAGTTTTGGGAAAT  689

seq1  GTGATATTTGATTTAAAAGTTTCATGCCATTAGTATCCTTGCAGTCACCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTGATTTAAAAGTTTCATGCCATTAGTATCCTTGCAGTCACCT  739

seq1  TGTGGCTAATTTGTGGGCGTGCTTAGTATAGATAAAATAGAAGAAGTATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAATTTGTGGGCGTGCTTAGTATAGATAAAATAGAAGAAGTATC  789

seq1  TTAGCTATTTTTCATTGCCATAACAAAATGCTGGGATGAAGGTAACTTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATTTTTCATTGCCATAACAAAATGCTGGGATGAAGGTAACTTGT  839

seq1  AAAAGCATTTCATTTCAGGGCTCATGGTTCCAGAGTCAAAGACGATCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTTCATTTCAGGGCTCATGGTTCCAGAGTCAAAGACGATCTTG  889

seq1  GTGTGGAGCGTGGCTGCAGGCAGGTGTGGTGCTGGTGTTGTAGCTGAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGCGTGGCTGCAGGCAGGTGTGGTGCTGGTGTTGTAGCTGAGAG  939

seq1  CTTGAAAGGTTTAAATCAGTCATCACTGGAACCAAAACTTCCAGACTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGGTTTAAATCAGTCATCACTGGAACCAAAACTTCCAGACTCTT  989

seq1  TGTCCAGCTAATTGTAGGTATCCTGGGCAAGCACTGTACAGAGAGACACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCTAATTGTAGGTATCCTGGGCAAGCACTGTACAGAGAGACACC  1039

seq1  TGAAGACCACTTCAGGTGACAACTCCTTCAACAGGACATACCTAATCCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCACTTCAGGTGACAACTCCTTCAACAGGACATACCTAATCCTT  1089

seq1  CCCAAACAGATCCACAAACTTGGGGTCAAGTATTCAAACATATGAGCCTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGATCCACAAACTTGGGGTCAAGTATTCAAACATATGAGCCTA  1139

seq1  TGGGAGGGTGTTCTCACTGAATTC  1170
      ||||||||||||||||||||||||
seq2  TGGGAGGGTGTTCTCACTGAATTC  1163


seq1: chr9_81952257_81953418
seq2: B6Ng01-305C10.g_66_1212

seq1  GAATTCATGGGTACTATGGCAACTCACACACACAGAGCTTCACAGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTACTATGGCAACTCACACACACAGAGCTTCACAGGTTAA  50

seq1  AGCCAGATGTGGTCTCACTGCCGAAGCAGAAAAGAACACAGGCTTTCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGTGGTCTCACTGCCGAAGCAGAAAAGAACACAGGCTTTCGCT  100

seq1  CCTAACCAAGAAGTTATCTGAAATGTTCACTTGTTTGCAAAGGCAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCAAGAAGTTATCTGAAATGTTCACTTGTTTGCAAAGGCAGAATT  150

seq1  AGTCATCTCCAATGGAGTCTCTCCAGATATTTTCATTGCAATATAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTCCAATGGAGTCTCTCCAGATATTTTCATTGCAATATAGGATA  200

seq1  GGTCTCATGCCCAAGATTTTGAGATCGTCTCATGGCCATTACAAATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATGCCCAAGATTTTGAGATCGTCTCATGGCCATTACAAATGAAC  250

seq1  TTAGTGGTATTTGTAGACATTTTATCTCATAACGTTTTATTTTTGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTATTTGTAGACATTTTATCTCATAACGTTTTATTTTTGTCTTA  300

seq1  TTGTACTTTTGTTTGCATATGTTGGTTTCTAATTTTTTTGTTTTCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTTTGTTTGCATATGTTGGTTTCTAATTTTTTTGTTTTCTGTAT  350

seq1  TTTTTTACGTATGTGAGTTTATTGCTTTATTACTATGGGTAAAAGGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACGTATGTGAGTTTATTGCTTTATTACTATGGGTAAAAGGGGCA  400

seq1  GCATGCCATCAGATGAATAGGGAGAAATGGAAAATGTGAAAAGAGTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCATCAGATGAATAGGGAGAAATGGAAAATGTGAAAAGAGTAGAG  450

seq1  AATGAGGAAGTAAATCAGAGTAAATTGTATGAAAACTGGTATTTAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAGTAAATCAGAGTAAATTGTATGAAAACTGGTATTTAATAAA  500

seq1  ATAAGAAGAAATATAATTTAACATGATTACTCCAAGACTGATTTTGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGAAATATAATTTAACATGATTACTCCAAGACTGATTTTGTAAC  550

seq1  TTTCTGGTTGTGTACAATAGGAAGACCTGACTCAGTATTTAATTAATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTGTGTACAATAGGAAGACCTGACTCAGTATTTAATTAATTGA  600

seq1  ACCAGACTGGGCCAATCTTTATTTACAATGATGAAAATGGAGTGCATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTGGGCCAATCTTTATTTACAATGATGAAAATGGAGTGCATACT  650

seq1  TGATCATGGAGAATGCAAACAAGCCCCTCAGATGGTTACCAAAACCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGGAGAATGCAAACAAGCCCCTCAGATGGTTACCAAAACCAACC  700

seq1  TGAAGGTTGACATGAATCACACAAAGAGAATATAGCTATAATGTTTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTGACATGAATCACACAAAGAGAATATAGCTATAATGTTTCCAG  750

seq1  GATCTTTTGAATGAAACAAACTCTTAATATTATACTTGGAATTGAGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTGAATGAAACAAACTCTTAATATTATACTTGGAATTGAGGCCT  800

seq1  TATACCTATTACTCTTCCCATAGAAATTTAGTTTCAATTTTCTAGCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTATTACTCTTCCCATAGAAATTTAGTTTCAATTTTCTAGCTCAC  850

seq1  TAAATACACCCTATTTTTCATTACTGGATGCTGTGGCTGAAACTGCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACACCCTATTTTTCATTACTGGATGCTGTGGCTGAAACTGCATAT  900

seq1  CTTTTGAGTATCTAGAAATACTCAGAAAATATCAACCACAGGGGGATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTTGAGTATCTAGAAATACTCAGAAAATATCAACCACAGGGGGATCA-  949

seq1  GGGAGAAACGGAGCAAAGTCCTTGCAAGAACTAAGTTGTTAGGATGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAACGGAGCAAAGTCCTTGCAAGAACTAAGTTGTTAGGATGAGAA  999

seq1  CGGTTAAGAGCAGATTCTAGGTAAGAGGACCAAACAAATTAACTTGAAGA  1050
      ||||| |||||||||||||||| ||||||||||||||||| ||||| |||
seq2  CGGTT-AGAGCAGATTCTAGGT-AGAGGACCAAACAAATT-ACTTG-AGA  1045

seq1  AAAGGAAATGCATGCTTTTCCTTACTACAGGCTGAGGTAGGGAGTAAAGA  1100
      ||  ||||||||||||||  ||||||||| ||||||||| ||||| ||||
seq2  AA--GAAATGCATGCTTT--CTTACTACA-GCTGAGGTA-GGAGT-AAGA  1088

seq1  GATGTGCAAAAAGTGAAGATATTGATCAAAGGCTACAAAATCCCAGCTAG  1150
      |||||   ||| |||||||| |||||| |  ||||| |||||||||||||
seq2  GATGTTGCAAAGGTGAAGATTTTGATCCA--GCTAC-AAATCCCAGCTAG  1135

seq1  TTGGGGGAAAAA  1162
      |  ||| |||||
seq2  TGTGGGCAAAAA  1147


| Home | SequenceCutter | Blast | Download |