BAC Information

Click to search

BAC

Clone NameB6Ng01-305L09
Chromosome9 (Build37)
Map Location 44,896,205 - 45,037,898
singlet/doubletdoublet
Overlap geneAmica1, Scn2b, Scn4b, Tmprss4
Upstream geneUsp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik
Downstream geneIl10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L09.bB6Ng01-305L09.g
ACCGA098934GA098935
length481739
definitionB6Ng01-305L09.b B6Ng01-305L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,037,412 - 45,037,898)(44,896,205 - 44,896,938)
sequence
actccctgccactcagccctgagcttccatgtacccctgtgtatcaagga
ccccaagtctgagccaacattttcctgaaatgtagacaagtcagaagcag
acgctcgcacgtgctccagagttctccatgcgtctgtctccacagctgtc
caaccagactccttagagatgatccaggaatctgcagttttgggcaagcc
ctcacccgactggctcgtctgtggctggagtcatgtatccggtgggtctg
aaccaccaaagtcggttcagatgagagttcatgtagggagttccccaaag
aaaatagccctgattgtatcactctggggaggaagcaggcaagagtcatt
ttgaaggtgcttaagtttagagagaaaaaaatacttaggtttgggctagt
attgttttgagtaaaaggatttaagataaataaacattttggatatatag
gggttttttttggttttttttttgggggggg
gaattccccaggtctctacctcccagcctgcaaccatccctactaatgac
tccttcttttgtgatattgctggctggagagggtagggttgaggggagtg
gcagccattctgctgggaacaccagccacaataccagaggaattaggtca
tccatttgagtggcatttcacctgctctgtcataaggcaggaaatggtta
tacaaagttctaatacccaggttagagaatgtgttgtatctttccttatg
ttgtaagaaatgaaaatgtggatatcacatttcatttgtctgtatataga
attagtcatggggccttgtgcaagctagacaggtacctgttgcattttca
ttatgaatattatcattggctaagtactttttggtcagttttatggtgat
aactttgatatgtccacataatggtcttttcaatccagagtcctaggtct
tgttcccttcttgatttttctccaatgtctgttatttgcagagtgaatat
gtgctgttctactattccaaccttagcgtgcctacggggcgcttccagaa
ccggtcacatttggtgggggacaccttccataatgatggtttctctcctg
ctccaagatgttcagaaggccgatgagggaatctacacctgttgaaatcc
gcctcaaaaatgagagcatggtgatgaaaaagcccgtggaactgtggtgt
gctaccagaggaacctaaagggtacaggggtcacttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45037412_45037898
seq2: B6Ng01-305L09.b_49_535 (reverse)

seq1  CCCCCCCCAAAAAAAAAACCAAAAAAAACCCCTATATATCCAAAATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAAAAAAAACCAAAAAAAACCCCTATATATCCAAAATGTTT  50

seq1  ATTTATCTTAAATCCTTTTACTCAAAACAATACTAGCCCAAACCTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTAAATCCTTTTACTCAAAACAATACTAGCCCAAACCTAAGTA  100

seq1  TTTTTTTCTCTCTAAACTTAAGCACCTTCAAAATGACTCTTGCCTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTCTAAACTTAAGCACCTTCAAAATGACTCTTGCCTGCTTC  150

seq1  CTCCCCAGAGTGATACAATCAGGGCTATTTTCTTTGGGGAACTCCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGAGTGATACAATCAGGGCTATTTTCTTTGGGGAACTCCCTACA  200

seq1  TGAACTCTCATCTGAACCGACTTTGGTGGTTCAGACCCACCGGATACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTCATCTGAACCGACTTTGGTGGTTCAGACCCACCGGATACATG  250

seq1  ACTCCAGCCACAGACGAGCCAGTCGGGTGAGGGCTTGCCCAAAACTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCCACAGACGAGCCAGTCGGGTGAGGGCTTGCCCAAAACTGCAG  300

seq1  ATTCCTGGATCATCTCTAAGGAGTCTGGTTGGACAGCTGTGGAGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGATCATCTCTAAGGAGTCTGGTTGGACAGCTGTGGAGACAGAC  350

seq1  GCATGGAGAACTCTGGAGCACGTGCGAGCGTCTGCTTCTGACTTGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGAACTCTGGAGCACGTGCGAGCGTCTGCTTCTGACTTGTCTAC  400

seq1  ATTTCAGGAAAATGTTGGCTCAGACTTGGGGTCCTTGATACACAGGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAAAATGTTGGCTCAGACTTGGGGTCCTTGATACACAGGGGTA  450

seq1  CATGGAAGCTCAGGGCTGAGTGGCAGGGAGTGAATTC  487
      |||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGCTCAGGGCTGAGTGGCAGGGAGTGAATTC  487

seq1: chr9_44896205_44896938
seq2: B6Ng01-305L09.g_73_811

seq1  GAATTCCCCAGGTCTCTACCTCCCAGCCTGCAACCATCCCTACTAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGGTCTCTACCTCCCAGCCTGCAACCATCCCTACTAATGAC  50

seq1  TCCTTCTTTTGTGATATTGCTGGCTGGAGAGGGTAGGGTTGAGGGGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTGTGATATTGCTGGCTGGAGAGGGTAGGGTTGAGGGGAGTG  100

seq1  GCAGCCATTCTGCTGGGAACACCAGCCACAATACCAGAGGAATTAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATTCTGCTGGGAACACCAGCCACAATACCAGAGGAATTAGGTCA  150

seq1  TCCATTTGAGTGGCATTTCACCTGCTCTGTCATAAGGCAGGAAATGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGAGTGGCATTTCACCTGCTCTGTCATAAGGCAGGAAATGGTTA  200

seq1  TACAAAGTTCTAATACCCAGGTTAGAGAATGTGTTGTATCTTTCCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTTCTAATACCCAGGTTAGAGAATGTGTTGTATCTTTCCTTATG  250

seq1  TTGTAAGAAATGAAAATGTGGATATCACATTTCATTTGTCTGTATATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAAATGAAAATGTGGATATCACATTTCATTTGTCTGTATATAGA  300

seq1  ATTAGTCATGGGGCCTTGTGCAAGCTAGACAGGTACCTGTTGCATTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCATGGGGCCTTGTGCAAGCTAGACAGGTACCTGTTGCATTTTCA  350

seq1  TTATGAATATTATCATTGGCTAAGTACTTTTTGGTCAGTTTTATGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATATTATCATTGGCTAAGTACTTTTTGGTCAGTTTTATGGTGAT  400

seq1  AACTTTGATATGTCCACATAATGGTCTTTTCAATCCAGAGTCCTAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGATATGTCCACATAATGGTCTTTTCAATCCAGAGTCCTAGGTCT  450

seq1  TGTTCCCTTCTTGATTTTTCTCCAATGTCTGTTATTTGCAGAGTGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTCTTGATTTTTCTCCAATGTCTGTTATTTGCAGAGTGAATAT  500

seq1  GTGCTGTTCTACTATTCCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCTACTATTCCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAA  550

seq1  CCGGTCACATTTGGTGGGGGACACCTTCCATAATGATGG-TTCTCTCCTG  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCGGTCACATTTGGTGGGGGACACCTTCCATAATGATGGTTTCTCTCCTG  600

seq1  CTCCAAGATGTTCAGAAGGCCGATGAGGGAATCTACACCTG-TGAAATCC  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCCAAGATGTTCAGAAGGCCGATGAGGGAATCTACACCTGTTGAAATCC  650

seq1  GCCTCAAAAATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGG-GT  697
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTCAAAAATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGGTGT  700

seq1  GCTACCAGAGGAACCTAAA-GGTACA-GGGTCACTTACC  734
      ||||||||||||||||||| |||||| ||||||||||||
seq2  GCTACCAGAGGAACCTAAAGGGTACAGGGGTCACTTACC  739