BAC Information

Click to search

BAC

Clone NameB6Ng01-306I14
Chromosome9 (Build37)
Map Location 27,159,097 - 27,316,830
singlet/doubletdoublet
Overlap geneSpata19
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I14.bB6Ng01-306I14.g
ACCGA099547GA099548
length800319
definitionB6Ng01-306I14.b B6Ng01-306I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,316,031 - 27,316,830)(27,159,097 - 27,159,415)
sequence
gaattcattattcaaatgtctccagaattgacaggaaggggttcagggca
aggctttggtgaacttaggaactatagaaggtccagaagagaagggctgt
ctgcttcgtcaggcatcctggtggctacatggaacctcacatgctcctgt
catcatctcagccttggactccaggtccttccttttaagttagctgtttc
tacaccaggaatgatgcagaaacaccactgaccttcccagctccaaaccc
acaccaccttatgtacttgtaactccaagaggtacactgacttccttcat
tagaacccttgtaccttagccacgtgcttcctggaaacagaactcggttg
agaaactgcatgacccgagacctctgagagaaaagcaaatctgtgtacca
tcagcatcctagcaacagattccaatccaacttgagacacttgtaggagt
ggttacctgtttcctccggagtgtcctacaggctgtgtgaagtattgctc
tcactccccaatcagctctacagacttagggggcacactgccttaagagt
ggataacggggggcagaaaggtctcttcttaggctggcatgcagctcagt
ggtacagtgcttgcccagcatgcataaggcctacagcgatcccccaggaa
tgtaaaagaaaagtgtttaaggtgtctctctgagactagggtgatggctt
gttcactaaagagtttgctgagcaaacatgaagaccagagtttgtatccc
ctgtgttcacaaaggaggacgaggaaggaaaggggagggagagagaggga


aaccaaagcagcacaagcgactcagcttgaagccagggcctccaccatct
acctttcccatccaacttaactccatggcaacatgaatgagtaggcttgc
tgttcttttgggtcttaaagaaatttgccccaccaatcccatctcccacc
aacattgacttcctggatctgttttaaggaaatgcagagcaaactctccc
ttcacccacattcagaccatccaggctctctttccttcttgccccgactt
gtgtgtggctccaggacccctagcttgtgcatggtttccgctagggaggt
ggttgggttagggggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27316031_27316830
seq2: B6Ng01-306I14.b_46_845 (reverse)

seq1  TCCCTCTCTCTCCCTCCCCTTTCCTTCCTCGTCCTCCTTTGTGAACACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTCTCCCTCCCCTTTCCTTCCTCGTCCTCCTTTGTGAACACAG  50

seq1  GGGATACAAACTCTGGTCTTCATGTTTGCTCAGCAAACTCTTTAGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAAACTCTGGTCTTCATGTTTGCTCAGCAAACTCTTTAGTGAAC  100

seq1  AAGCCATCACCCTAGTCTCAGAGAGACACCTTAAACACTTTTCTTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCACCCTAGTCTCAGAGAGACACCTTAAACACTTTTCTTTTACA  150

seq1  TTCCTGGGGGATCGCTGTAGGCCTTATGCATGCTGGGCAAGCACTGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGGGATCGCTGTAGGCCTTATGCATGCTGGGCAAGCACTGTACC  200

seq1  ACTGAGCTGCATGCCAGCCTAAGAAGAGACCTTTCTGCCCCCCGTTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGCATGCCAGCCTAAGAAGAGACCTTTCTGCCCCCCGTTATCC  250

seq1  ACTCTTAAGGCAGTGTGCCCCCTAAGTCTGTAGAGCTGATTGGGGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAGGCAGTGTGCCCCCTAAGTCTGTAGAGCTGATTGGGGAGTGA  300

seq1  GAGCAATACTTCACACAGCCTGTAGGACACTCCGGAGGAAACAGGTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATACTTCACACAGCCTGTAGGACACTCCGGAGGAAACAGGTAACC  350

seq1  ACTCCTACAAGTGTCTCAAGTTGGATTGGAATCTGTTGCTAGGATGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACAAGTGTCTCAAGTTGGATTGGAATCTGTTGCTAGGATGCTGA  400

seq1  TGGTACACAGATTTGCTTTTCTCTCAGAGGTCTCGGGTCATGCAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACAGATTTGCTTTTCTCTCAGAGGTCTCGGGTCATGCAGTTTCT  450

seq1  CAACCGAGTTCTGTTTCCAGGAAGCACGTGGCTAAGGTACAAGGGTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGAGTTCTGTTTCCAGGAAGCACGTGGCTAAGGTACAAGGGTTCTA  500

seq1  ATGAAGGAAGTCAGTGTACCTCTTGGAGTTACAAGTACATAAGGTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAGTCAGTGTACCTCTTGGAGTTACAAGTACATAAGGTGGTGT  550

seq1  GGGTTTGGAGCTGGGAAGGTCAGTGGTGTTTCTGCATCATTCCTGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGAGCTGGGAAGGTCAGTGGTGTTTCTGCATCATTCCTGGTGTA  600

seq1  GAAACAGCTAACTTAAAAGGAAGGACCTGGAGTCCAAGGCTGAGATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTAACTTAAAAGGAAGGACCTGGAGTCCAAGGCTGAGATGATG  650

seq1  ACAGGAGCATGTGAGGTTCCATGTAGCCACCAGGATGCCTGACGAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCATGTGAGGTTCCATGTAGCCACCAGGATGCCTGACGAAGCAG  700

seq1  ACAGCCCTTCTCTTCTGGACCTTCTATAGTTCCTAAGTTCACCAAAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTTCTCTTCTGGACCTTCTATAGTTCCTAAGTTCACCAAAGCCT  750

seq1  TGCCCTGAACCCCTTCCTGTCAATTCTGGAGACATTTGAATAATGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGAACCCCTTCCTGTCAATTCTGGAGACATTTGAATAATGAATTC  800


seq1: chr9_27159097_27159415
seq2: B6Ng01-306I14.g_71_389

seq1  AACCAAAGCAGCACAAGCGACTCAGCTTGAAGCCAGGGCCTCCACCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGCAGCACAAGCGACTCAGCTTGAAGCCAGGGCCTCCACCATCT  50

seq1  ACCTTTCCCATCCAACTTAACTCCATGGCAACATGAATGAGTAGGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCCATCCAACTTAACTCCATGGCAACATGAATGAGTAGGCTTGC  100

seq1  TGTTCTTTTGGGTCTTAAAGAAATTTGCCCCACCAATCCCATCTCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTGGGTCTTAAAGAAATTTGCCCCACCAATCCCATCTCCCACC  150

seq1  AACATTGACTTCCTGGATCTGTTTTAAGGAAATGCAGAGCAAACTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGACTTCCTGGATCTGTTTTAAGGAAATGCAGAGCAAACTCTCCC  200

seq1  TTCACCCACATTCAGACCATCCAGGCTCTCTTTCCTTCTTGCCCCGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCACATTCAGACCATCCAGGCTCTCTTTCCTTCTTGCCCCGACTT  250

seq1  GTGTGTGGCTCCAGGACCCCTAGCTTGTGCATGGTTTCCGCTAGGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGCTCCAGGACCCCTAGCTTGTGCATGGTTTCCGCTAGGGAGGT  300

seq1  GGTTGGGTTAGGGGGAGAA  319
      |||||||||||||||||||
seq2  GGTTGGGTTAGGGGGAGAA  319


| Home | SequenceCutter | Blast | Download |