BAC Information

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BAC

Clone NameB6Ng01-307I23
Chromosome9 (Build37)
Map Location 91,535,771 - 91,649,644
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307I23.bB6Ng01-307I23.g
ACCGA100299GA100300
length1,1651,085
definitionB6Ng01-307I23.b B6Ng01-307I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,535,771 - 91,536,954)(91,648,553 - 91,649,644)
sequence
gaattcctgtatgttagtcttaacctctccaacactgcactttaaagatg
gaactctaatttacatattacaccatgatgaactttttttttttttttct
gaagaggtgtgagcctttcaggtcctttaaagctactgtttctttaaaac
atatcatctcattatggattaatattacttttgaattatctctcctaaat
ttgccttaaaactcttgctataaatgatgcatgaatcaaacaaaacacaa
cacaaaagaaatatatggctttgtggattatttcaaagcctatgtgtttc
ccactaccaccttgccaaagaaatagaaatttgctgttcacctcagaaac
tgcttaattgctccctatccattggagtgagtttctcttcctgagagaac
cactatttgactctcccagagttccatccctctggtaaccatgagataca
gtagtttaatcttgagtaaatataaagattaaatattttatgcgtctttt
aactggcagtttttgtcttcatctttttcttatcttccaatttatctgtt
ggaaatcctgggagaatattgatcatgattccaccaacatcttgtgttct
ctgaatccgtagcagctggattcaaaggcttggtcaggtcacatttgatc
attctgtgtcttctttcatcaggtagttttgatgctgtttagacccccac
tttttctaagactggctgataatgatgatgctcagtgcttagatctgtta
cttttgggtgaattgcaaatgacgactctagttcctttttaaattttgaa
tgaatacccattttacttagttgatgacccctgagaaagtgagacagaat
catctttttttccctagttactttcagtcaaggttgagtcaccatgcatt
cagtctgttggaatttgttttttaaaggatccccacaagcttttgaatta
gaacacttttaagtaaatttattagtctttttttcttacctctcctccaa
atctgttgtttgcttgtttgttttctggaaatttatatttctgattctct
ggtctgtttggattttctcgagcacctccattgttagttaattaacttta
ttttaatttatttatttatttccatccaggaacatggtcagagtctattg
gacattttccttgga
gaattccatgagtcaattttactacatgcatttgaagtaaaatgtcacaa
gctttcacgaatgtgagaacaacgctaatgtatgaacaagaagtaatttc
caacagggttctaaaggaaccaaacatgttacagtacaatgacaactata
tacgattatctgttttaaatcattgctaatatttgtgaataattaaatgc
cagaaataagaattttgacattatccaaagacatacagagaaaacatgtg
ttcttttaattttgatttatgatcaatgagtaacataagatataattagg
gcttaaatttgcaaataaaaatgtatgcaactgctattcccatcatattt
ttatggtgagggtgtggcctctaagatctaacctccacagtgctgctaac
tggaaggaaaaaagttctgtagtgattttcataatgcaaatatggtgtaa
gccaaagcctatgatcactcttatagctccctagaagacaaatgagcagc
agcaagtacttaaaagatacccgggtatgaagtatacctctgtaaagctt
acccacagccttgtatagtttctagaaactgaatgctatgtcagttacaa
tacccatgatctacccatgaagcacatctctggtggcatagaaaacagca
tgaagatgaacagacatgtaatatcactaaggtggtggtgacttctttga
aaaacaccaacccaaacaggcaaaggaaggcaggttaaagacaagtaagg
cttgtggctggtaagtggatgcatggttatagctagcaactttaggcagg
caagtgagcacatagaacaagactcagttaatatttatgttgaacttagt
agactgaaagggtaaagtttggtctgagtcggggctctccagtctctcga
atactggtattgctttagatgataggactgcatttctttacctcattctc
tttttattctaacttagctataatgccttctttctcttctttctcccaac
tctctcctctctgctacctacttaccatgaatttatttactatcagtcaa
cacactgatatttgaacataatatttagggtaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91535771_91536954
seq2: B6Ng01-307I23.b_49_1213

seq1  GAATTCCTGTATGTTAGTCTTAACCTCTCCAACACTGCACTTTAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATGTTAGTCTTAACCTCTCCAACACTGCACTTTAAAGATG  50

seq1  GAACTCTAATTTACATATTACACCATGATGAACTTTTTTTTTTTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTAATTTACATATTACACCATGATGAACTTTTTTTTTTTTTTTCT  100

seq1  GAAGAGGTGTGAGCCTTTCAGGTCCTTTAAAGCTACTGTTTCTTTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGTGAGCCTTTCAGGTCCTTTAAAGCTACTGTTTCTTTAAAAC  150

seq1  ATATCATCTCATTATGGATTAATATTACTTTTGAATTATCTCTCCTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTCATTATGGATTAATATTACTTTTGAATTATCTCTCCTAAAT  200

seq1  TTGCCTTAAAACTCTTGCTATAAATGATGCATGAATCAAACAAAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAAAACTCTTGCTATAAATGATGCATGAATCAAACAAAACACAA  250

seq1  CACAAAAGAAATATATGGCTTTGTGGATTATTTCAAAGCCTATGTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAAATATATGGCTTTGTGGATTATTTCAAAGCCTATGTGTTTC  300

seq1  CCACTACCACCTTGCCAAAGAAATAGAAATTTGCTGTTCACCTCAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCACCTTGCCAAAGAAATAGAAATTTGCTGTTCACCTCAGAAAC  350

seq1  TGCTTAATTGCTCCCTATCCATTGGAGTGAGTTTCTCTTCCTGAGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTGCTCCCTATCCATTGGAGTGAGTTTCTCTTCCTGAGAGAAC  400

seq1  CACTATTTGACTCTCCCAGAGTTCCATCCCTCTGGTAACCATGAGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTGACTCTCCCAGAGTTCCATCCCTCTGGTAACCATGAGATACA  450

seq1  GTAGTTTAATCTTGAGTAAATATAAAGATTAAATATTTTATGCGTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAATCTTGAGTAAATATAAAGATTAAATATTTTATGCGTCTTTT  500

seq1  AACTGGCAGTTTTTGTCTTCATCTTTTTCTTATCTTCCAATTTATCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCAGTTTTTGTCTTCATCTTTTTCTTATCTTCCAATTTATCTGTT  550

seq1  GGAAATCCTGGGAGAATATTGATCATGATTCCACCAACATCTTGTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTGGGAGAATATTGATCATGATTCCACCAACATCTTGTGTTCT  600

seq1  CTGAATCCGTAGCAGCTGGATTCAAAGGCTTGGTCAGGTCACATTTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCGTAGCAGCTGGATTCAAAGGCTTGGTCAGGTCACATTTGATC  650

seq1  ATTCTGTGTCTTCTTTCATCAGGTAGTTTTGATGCTGTTTAGACCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTCTTCTTTCATCAGGTAGTTTTGATGCTGTTTAGACCCCCAC  700

seq1  TTTTTCTAAGACTGGCTGATAATGATGATGCTCAGTGCTTAGATCTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAGACTGGCTGATAATGATGATGCTCAGTGCTTAGATCTGTTA  750

seq1  CTTTTGGGTGAATTGCAAATGACGACTCTAGTTCCTTTTTAAATTTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTGAATTGCAAATGACGACTCTAGTTCCTTTTTAAATTTTGAA  800

seq1  TGAATACCCATTTTACTTAGTTGATGACCCCTGAGAAAGTGAGACAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACCCATTTTACTTAGTTGATGACCCCTGAGAAAGTGAGACAGAAT  850

seq1  CATCTTTTTTTCCCTAGTTACTTTCAGTCAAGGTTGAGTCACCATGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTTCCCTAGTTACTTTCAGTCAAGGTTGAGTCACCATGCATT  900

seq1  CAGTCTGTTGGAATTTGTTTTTTAAAGGATCCCCACAAGCTTTTGAATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTTGGAATTTGTTTTTTAAAGGATCCCCACAAGCTTTTGAATTA  950

seq1  GAACACTTTTAAGTAAATTTATTAGTCTTTTTTTCCTACCTTCTTCTCCA  1000
      ||||||||||||||||||||||||||||||||||| |||| ||| |||||
seq2  GAACACTTTTAAGTAAATTTATTAGTCTTTTTTTCTTACC-TCTCCTCCA  999

seq1  AATTCTTGTTTGTTTGCTTGTTTGTTTTTTCCTGAAATTTATATTCCTGA  1050
      || |||   |||||||||||||||  |||||  |||||||||||| ||||
seq2  AA-TCT--GTTGTTTGCTTGTTTG--TTTTCTGGAAATTTATATTTCTGA  1044

seq1  TTCTCTGGTCTGTTTGAATTTTCTCAGAGCA-CTCCATTATTTTATTTTA  1099
      |||||||||||||||| |||||||| ||||| ||||||  | ||| || |
seq2  TTCTCTGGTCTGTTTGGATTTTCTC-GAGCACCTCCAT--TGTTAGTTAA  1091

seq1  TTATATTTTATTTTATTTTATTTTATTTTATTTTTCATCCAGGAGAACCA  1149
      ||| | ||||||||| |||| |||||||   ||| ||||||||   | ||
seq2  TTA-ACTTTATTTTAATTTA-TTTATTT--ATTTCCATCCAGG---AACA  1134

seq1  TGCTCAAGAGTCATTTTGGACATTTTCCCCTTGGA  1184
      || || |||||| | |||||||||||  |||||||
seq2  TGGTC-AGAGTC-TATTGGACATTTT--CCTTGGA  1165

seq1: chr9_91648553_91649644
seq2: B6Ng01-307I23.g_64_1148 (reverse)

seq1  TATTACCTAAAATA-TATGTTAAAATATTCAGTGTG-TGACTGAATAGTA  48
      |||||||  ||||| |||||| ||||| |||||||| |||||| ||||||
seq2  TATTACCCTAAATATTATGTTCAAATA-TCAGTGTGTTGACTG-ATAGTA  48

seq1  AATAAATTCATTGTAAGTAGGGTAGCAGAAGAGGAGAGGAGTTGGGAGAA  98
      ||||||||||| ||||||| |||||||| |||||||| ||||||||||||
seq2  AATAAATTCATGGTAAGTA-GGTAGCAG-AGAGGAGA-GAGTTGGGAGAA  95

seq1  AAGAAAGAGAAAGAAAGGCAATTATAGCTAAGTTAGAATAAAAAGAGAAT  148
      |   ||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  A--GAAGAGAAAG-AAGGC-ATTATAGCTAAGTTAGAATAAAAAGAGAAT  141

seq1  GAGGTAAAGAAATGCAGTCCTATCATCTAAAGCAATACCAGTATTCGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAAGAAATGCAGTCCTATCATCTAAAGCAATACCAGTATTCGAGA  191

seq1  GACTGGAGAGCCCCGACTCAGACCAAACTTTACCCTTTCAGTCTACTAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGCCCCGACTCAGACCAAACTTTACCCTTTCAGTCTACTAAG  241

seq1  TTCAACATAAATATTAACTGAGTCTTGTTCTATGTGCTCACTTGCCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATAAATATTAACTGAGTCTTGTTCTATGTGCTCACTTGCCTGCC  291

seq1  TAAAGTTGCTAGCTATAACCATGCATCCACTTACCAGCCACAAGCCTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGCTAGCTATAACCATGCATCCACTTACCAGCCACAAGCCTTAC  341

seq1  TTGTCTTTAACCTGCCTTCCTTTGCCTGTTTGGGTTGGTGTTTTTCAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAACCTGCCTTCCTTTGCCTGTTTGGGTTGGTGTTTTTCAAAG  391

seq1  AAGTCACCACCACCTTAGTGATATTACATGTCTGTTCATCTTCATGCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCACCACCTTAGTGATATTACATGTCTGTTCATCTTCATGCTGT  441

seq1  TTTCTATGCCACCAGAGATGTGCTTCATGGGTAGATCATGGGTATTGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCCACCAGAGATGTGCTTCATGGGTAGATCATGGGTATTGTAA  491

seq1  CTGACATAGCATTCAGTTTCTAGAAACTATACAAGGCTGTGGGTAAGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATAGCATTCAGTTTCTAGAAACTATACAAGGCTGTGGGTAAGCTT  541

seq1  TACAGAGGTATACTTCATACCCGGGTATCTTTTAAGTACTTGCTGCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGTATACTTCATACCCGGGTATCTTTTAAGTACTTGCTGCTGCT  591

seq1  CATTTGTCTTCTAGGGAGCTATAAGAGTGATCATAGGCTTTGGCTTACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTTCTAGGGAGCTATAAGAGTGATCATAGGCTTTGGCTTACAC  641

seq1  CATATTTGCATTATGAAAATCACTACAGAACTTTTTTCCTTCCAGTTAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGCATTATGAAAATCACTACAGAACTTTTTTCCTTCCAGTTAGC  691

seq1  AGCACTGTGGAGGTTAGATCTTAGAGGCCACACCCTCACCATAAAAATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGGAGGTTAGATCTTAGAGGCCACACCCTCACCATAAAAATAT  741

seq1  GATGGGAATAGCAGTTGCATACATTTTTATTTGCAAATTTAAGCCCTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAATAGCAGTTGCATACATTTTTATTTGCAAATTTAAGCCCTAAT  791

seq1  TATATCTTATGTTACTCATTGATCATAAATCAAAATTAAAAGAACACATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTATGTTACTCATTGATCATAAATCAAAATTAAAAGAACACATG  841

seq1  TTTTCTCTGTATGTCTTTGGATAATGTCAAAATTCTTATTTCTGGCATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTATGTCTTTGGATAATGTCAAAATTCTTATTTCTGGCATTT  891

seq1  AATTATTCACAAATATTAGCAATGATTTAAAACAGATAATCGTATATAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCACAAATATTAGCAATGATTTAAAACAGATAATCGTATATAGT  941

seq1  TGTCATTGTACTGTAACATGTTTGGTTCCTTTAGAACCCTGTTGGAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTACTGTAACATGTTTGGTTCCTTTAGAACCCTGTTGGAAATT  991

seq1  ACTTCTTGTTCATACATTAGCGTTGTTCTCACATTCGTGAAAGCTTGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTTCATACATTAGCGTTGTTCTCACATTCGTGAAAGCTTGTGA  1041

seq1  CATTTTACTTCAAATGCATGTAGTAAAATTGACTCATGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTTCAAATGCATGTAGTAAAATTGACTCATGGAATTC  1085