BAC Information

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BAC

Clone NameB6Ng01-307L23
Chromosome9 (Build37)
Map Location 32,911,205 - 33,038,400
singlet/doubletdoublet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L23.bB6Ng01-307L23.g
ACCGA100439GA100440
length888880
definitionB6Ng01-307L23.b B6Ng01-307L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,037,851 - 33,038,400)(32,911,205 - 32,912,084)
sequence
gaattccctaaccaagatgagctctctatcttcctatcatttaaaaccag
gactcattacagaaaacaataaccagtcaaaatgtagagaacaactggtc
ttagggtactcaaccactttgagatatctacaatacaactcctgaccgta
agtctcggggtacatcttgcaagtgaggacagaaaggttgtacgaaccag
tggaccaaaacgtctgctgtgagagtgggccttgtcattaggacatgaaa
gtagcacccaggaaatctcaacaacatggctgctggaagaagatttgaat
cagttgacatcctaggtagattagagaaacctcatgagccccactcccac
ctcaagagctacaaacaatgagcaaatgctgagagcggagtagttagcct
tcgctggggatgtgcatcctgattggttaacaaatagcaagtgttcagcc
tcagaagcatacacatgcaggcaacagcgaatggaaacaggagatgacat
ttataggcgtatttgtctgtataaatatgttacaaaatagttaaagaaga
ggaagctatgagttttggaggaagatgaaacacagggaggtttggaggga
ggagaagaaaaagaaggaaacggtgtgttatattttaatgaaataaaaaa
atgtttgaaataagacagggtttcactatgtaaccatggatagcctgaaa
ctcacagagatctgcctccctctgcctcccccaggtatgggattgaaggc
atgtgctacactgtatgtgccagtgtatttggcaggtttataaaatgcag
ggaaagctcagcctatgatcagcatactcacctagttctttaaatcacca
gtctatctggagagattccagtgaggccttctcatagg

gaattcatattctctctgatgttagctcctatctgttgagattacagtgt
aggtgccaactttgatctatattctgatttctactgagcttatttcatta
ctctgtacatgggtgttgctcttaataggtctcctattgtgggacttcaa
ttcttattcatttgtcctctttatacaacacagttatagcaacatatatt
tacacagcttacaaattaccaatcttctacattttaatgtaaaactcctt
taatattagctatattattaatcatattaatgttaatttaatgacattta
tgtatttgtattgttaatgctgttggtgtgtgttattccattatgctagg
gtaaggcttcttttattagtttccccttcagcattgtcacaggctgtttg
tgtcaacgttgaaagtgggtattaatatttctcagcactaattggaaggg
taaacatttggtgccacaataatgtttttaaattggtattgcattgtctc
agaacatcacaaagaaacattcaaacaaatgagtttttactccctcctgc
aatcctactggtcagagaagtattccctcaaattatcattgaggcacaca
acacactccctccttagactgatgtcccacaccattctttattgccctgg
agtgagcttctgatttagaaatcctaaacagatagcaagtgcatgttaca
gtagaaaagatgcacatttttctgagctttttgagtttgagaatggaaga
aaggagtttactcctttaaaagcccagacattctatttggttcttcattt
tttctttcactcccacccgtcttagtcattttgtttgccaactaacctag
gcatcaagggttttttttttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33037851_33038400
seq2: B6Ng01-307L23.b_45_594 (reverse)

seq1  TCTTCTTTAACTATTTTGTAACATATTTATACAGACAAATACGCCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAACTATTTTGTAACATATTTATACAGACAAATACGCCTATAA  50

seq1  ATGTCATCTCCTGTTTCCATTCGCTGTTGCCTGCATGTGTATGCTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCTCCTGTTTCCATTCGCTGTTGCCTGCATGTGTATGCTTCTGA  100

seq1  GGCTGAACACTTGCTATTTGTTAACCAATCAGGATGCACATCCCCAGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACACTTGCTATTTGTTAACCAATCAGGATGCACATCCCCAGCGA  150

seq1  AGGCTAACTACTCCGCTCTCAGCATTTGCTCATTGTTTGTAGCTCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACTACTCCGCTCTCAGCATTTGCTCATTGTTTGTAGCTCTTGAG  200

seq1  GTGGGAGTGGGGCTCATGAGGTTTCTCTAATCTACCTAGGATGTCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGGGGCTCATGAGGTTTCTCTAATCTACCTAGGATGTCAACTG  250

seq1  ATTCAAATCTTCTTCCAGCAGCCATGTTGTTGAGATTTCCTGGGTGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCTTCTTCCAGCAGCCATGTTGTTGAGATTTCCTGGGTGCTAC  300

seq1  TTTCATGTCCTAATGACAAGGCCCACTCTCACAGCAGACGTTTTGGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTCCTAATGACAAGGCCCACTCTCACAGCAGACGTTTTGGTCCA  350

seq1  CTGGTTCGTACAACCTTTCTGTCCTCACTTGCAAGATGTACCCCGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCGTACAACCTTTCTGTCCTCACTTGCAAGATGTACCCCGAGACT  400

seq1  TACGGTCAGGAGTTGTATTGTAGATATCTCAAAGTGGTTGAGTACCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTCAGGAGTTGTATTGTAGATATCTCAAAGTGGTTGAGTACCCTAA  450

seq1  GACCAGTTGTTCTCTACATTTTGACTGGTTATTGTTTTCTGTAATGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTGTTCTCTACATTTTGACTGGTTATTGTTTTCTGTAATGAGTC  500

seq1  CTGGTTTTAAATGATAGGAAGATAGAGAGCTCATCTTGGTTAGGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTAAATGATAGGAAGATAGAGAGCTCATCTTGGTTAGGGAATTC  550


seq1: chr9_32911205_32912084
seq2: B6Ng01-307L23.g_64_943

seq1  GAATTCATATTCTCTCTGATGTTAGCTCCTATCTGTTGAGATTACAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCTCTCTGATGTTAGCTCCTATCTGTTGAGATTACAGTGT  50

seq1  AGGTGCCAACTTTGATCTATATTCTGATTTCTACTGAGCTTATTTCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAACTTTGATCTATATTCTGATTTCTACTGAGCTTATTTCATTA  100

seq1  CTCTGTACATGGGTGTTGCTCTTAATAGGTCTCCTATTGTGGGACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACATGGGTGTTGCTCTTAATAGGTCTCCTATTGTGGGACTTCAA  150

seq1  TTCTTATTCATTTGTCCTCTTTATACAACACAGTTATAGCAACATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCATTTGTCCTCTTTATACAACACAGTTATAGCAACATATATT  200

seq1  TACACAGCTTACAAATTACCAATCTTCTACATTTTAATGTAAAACTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCTTACAAATTACCAATCTTCTACATTTTAATGTAAAACTCCTT  250

seq1  TAATATTAGCTATATTATTAATCATATTAATGTTAATTTAATGACATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAGCTATATTATTAATCATATTAATGTTAATTTAATGACATTTA  300

seq1  TGTATTTGTATTGTTAATGCTGTTGGTGTGTGTTATTCCATTATGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTATTGTTAATGCTGTTGGTGTGTGTTATTCCATTATGCTAGG  350

seq1  GTAAGGCTTCTTTTATTAGTTTCCCCTTCAGCATTGTCACAGGCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCTTCTTTTATTAGTTTCCCCTTCAGCATTGTCACAGGCTGTTTG  400

seq1  TGTCAACGTTGAAAGTGGGTATTAATATTTCTCAGCACTAATTGGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACGTTGAAAGTGGGTATTAATATTTCTCAGCACTAATTGGAAGGG  450

seq1  TAAACATTTGGTGCCACAATAATGTTTTTAAATTGGTATTGCATTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTGGTGCCACAATAATGTTTTTAAATTGGTATTGCATTGTCTC  500

seq1  AGAACATCACAAAGAAACATTCAAACAAATGAGTTTTTACTCCCTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCACAAAGAAACATTCAAACAAATGAGTTTTTACTCCCTCCTGC  550

seq1  AATCCTACTGGTCAGAGAAGTATTCCCTCAAATTATCATTGAGGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTGGTCAGAGAAGTATTCCCTCAAATTATCATTGAGGCACACA  600

seq1  ACACACTCCCTCCTTAGACTGATGTCCCACACCATTCTTTATTGCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCCTCCTTAGACTGATGTCCCACACCATTCTTTATTGCCCTGG  650

seq1  AGTGAGCTTCTGATTTAGAAATCCTAAACAGATAGCAAGTGCATGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTTCTGATTTAGAAATCCTAAACAGATAGCAAGTGCATGTTACA  700

seq1  GTAGAAAAGATGCACATTTTTCTGAGCTTTTTGAGTTTGAGAATGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAGATGCACATTTTTCTGAGCTTTTTGAGTTTGAGAATGGAAGA  750

seq1  AAGGAGTTTACTCCTTTAAAAGCCCAGACATTCTATTTGGTTCTTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTACTCCTTTAAAAGCCCAGACATTCTATTTGGTTCTTCATTT  800

seq1  TTTCTTTCACTCCCACCCGTCTTAGTCATTTTGTTTGCCAACTAACCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCACTCCCACCCGTCTTAGTCATTTTGTTTGCCAACTAACCTAG  850

seq1  GCATCAAGGGTTTTTTTTTGGGGGGGGGGG  880
      ||||||||||||||||||| ||||||||||
seq2  GCATCAAGGGTTTTTTTTTTGGGGGGGGGG  880


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