BAC Information

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BAC

Clone NameB6Ng01-308F01
Chromosome9 (Build37)
Map Location 117,183,861 - 117,230,413
singlet/doubletdoublet
Overlap genenone
Upstream geneD730003K21Rik, Rbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308F01.bB6Ng01-308F01.g
ACCGA100849GA100850
length1,127902
definitionB6Ng01-308F01.b B6Ng01-308F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,183,861 - 117,184,998)(117,229,516 - 117,230,413)
sequence
gaattcaaagatgtagaagtagaaacaatttcttcattataaattacctg
tatgttctacttattgttaaaaccataaaggtatttaaatgaggaaaagc
accgtagtgttcatttgtttgctctcgttagcctggaaaacaaactaaat
gtcttttgtatttttaactacagaatcactagagatgaaaacggtttcta
agctgtggctgggccaaatggggaaaaaaaaagcattgctaagctctgct
gttgtcgtctccgtgggtcattcccactcccaaggatttcggtgtcgttt
ctgatcaatcaggatggtgggaggtgacccagtttcacggcatctgaagc
tattccatttttctgtgatacaattccatcgtgggccaagaagaaaggtc
cagcagagagagacgttcacgttctcttaaaatgttttcttcggagaggt
tgtttctatgacaggaggaaaaagaaaactgaagcatacgtctaaggctg
agactgtctgatggaaactcttccctggttaccagccttcttcccaagca
cgaggatggatcgtctaagagtctgacatttcaggactacggacgtgtag
agctttggaggaattcaaccccatctgtctttaagcactggtgacataac
cctgtgaattctgcagcactgtaaaattggtgatttgtaaaatccttatt
ggcacagaaaactaaaccaacaaagagaaaaacgatgagtgagattcact
ttctccataactcttagctttctttaccatcacggtaatgccttctttta
gaagcagctcagaaaccaaggaaaaaccaccagccacaaaggagacaata
agtccagtcaggagagatttgggacctacctttaatccttaataatggtt
cagaaaaccatttctctcttgcttttattgtctctgacaagtccagcaaa
agcacagaccgggcaagcattttttatgctgggcctcttcagatagcttg
tataatttacatattttatttcagtaatagcactagctggcctaagcata
agcacttttaacatgaataaattagaaatctctcatattcataggtaacg
gacgaatcgtaacgagccatggctgtt

gaattcctctactttgatggctggagagtaagtgttagcagttcttgaaa
aattcacacctaagaggaactattgggaggcctctaaaatgttattttta
tttgtgcatatttctaaaataaatatgttttggtagtaactatggttagc
acacatgacaatttatgctctcctgataagaagagttcccaaagggagaa
ttcccttttgtaagaaagccaaaaaaaatttaagaactacaaagaaaaaa
gaaaaaaggaaaatgcataataatagttaatattcaaagcaaggcttagc
atgtgatgtactgtttatttcacatatttgtttaatgtcagtgggagatt
tgaggtacattattttatctacttatcacattcccggagagatagtaaaa
ttaatcagaacaagtaggctataatctgaggatcttcggcagtttagtga
gatttaaataatatctctattttatctaagccattcgtgtttgctaaatg
tgtttctaggtcagtatcatcttgtctgcataagtacttggcattttcta
agccatttgaagtcattagttcatcattatgaagataattctgtgaagga
tgcagtgtcatgttgtctaatgggagaagaggggactggaagcctcaagg
acttggctttcatcaccctggactgggaaggaaggagttaaggaaatgct
tggtttcattcattttggcttttttcattgttgaaaaaaaaaaggcttca
gccttcagaagcctaccatttgaatctatctcattctcctacagggcatt
gccaaactggagcagtctttggacatttgtgtctaggatgagccttatgg
taacattattggtagcagctaaaggtttgtgtgtgggaagggggggaggt
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117183861_117184998
seq2: B6Ng01-308F01.b_45_1171

seq1  GAATTCAAAGATGTAGAAGTAGAAACAATTTCTTCATTATAAATTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATGTAGAAGTAGAAACAATTTCTTCATTATAAATTACCTG  50

seq1  TATGTTCTACTTATTGTTAAAACCATAAAGGTATTTAAATGAGGAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTACTTATTGTTAAAACCATAAAGGTATTTAAATGAGGAAAAGC  100

seq1  ACCGTAGTGTTCATTTGTTTGCTCTCGTTAGCCTGGAAAACAAACTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTAGTGTTCATTTGTTTGCTCTCGTTAGCCTGGAAAACAAACTAAAT  150

seq1  GTCTTTTGTATTTTTAACTACAGAATCACTAGAGATGAAAACGGTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTATTTTTAACTACAGAATCACTAGAGATGAAAACGGTTTCTA  200

seq1  AGCTGTGGCTGGGCCAAATGGGGAAAAAAAAAGCATTGCTAAGCTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGCTGGGCCAAATGGGGAAAAAAAAAGCATTGCTAAGCTCTGCT  250

seq1  GTTGTCGTCTCCGTGGGTCATTCCCACTCCCAAGGATTTCGGTGTCGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCGTCTCCGTGGGTCATTCCCACTCCCAAGGATTTCGGTGTCGTTT  300

seq1  CTGATCAATCAGGATGGTGGGAGGTGACCCAGTTTCACGGCATCTGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAATCAGGATGGTGGGAGGTGACCCAGTTTCACGGCATCTGAAGC  350

seq1  TATTCCATTTTTCTGTGATACAATTCCATCGTGGGCCAAGAAGAAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTTTTCTGTGATACAATTCCATCGTGGGCCAAGAAGAAAGGTC  400

seq1  CAGCAGAGAGAGACGTTCACGTTCTCTTAAAATGTTTTCTTCGGAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAGAGACGTTCACGTTCTCTTAAAATGTTTTCTTCGGAGAGGT  450

seq1  TGTTTCTATGACAGGAGGAAAAAGAAAACTGAAGCATACGTCTAAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATGACAGGAGGAAAAAGAAAACTGAAGCATACGTCTAAGGCTG  500

seq1  AGACTGTCTGATGGAAACTCTTCCCTGGTTACCAGCCTTCTTCCCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCTGATGGAAACTCTTCCCTGGTTACCAGCCTTCTTCCCAAGCA  550

seq1  CGAGGATGGATCGTCTAAGAGTCTGACATTTCAGGACTACGGACGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGATGGATCGTCTAAGAGTCTGACATTTCAGGACTACGGACGTGTAG  600

seq1  AGCTTTGGAGGAATTCAACCCCATCTGTCTTTAAGCACTGGTGACATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGAGGAATTCAACCCCATCTGTCTTTAAGCACTGGTGACATAAC  650

seq1  CCTGTGAATTCTGCAGCACTGTAAAATTGGTGATTTGTAAAATCCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATTCTGCAGCACTGTAAAATTGGTGATTTGTAAAATCCTTATT  700

seq1  GGCACAGAAAACTAAACCAACAAAGAGAAAAACGATGAGTGAGATTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAAAACTAAACCAACAAAGAGAAAAACGATGAGTGAGATTCACT  750

seq1  TTCTCCATAACTCTTAGCTTTCTTTACCATCACGGTAATGCCTTCTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATAACTCTTAGCTTTCTTTACCATCACGGTAATGCCTTCTTTTA  800

seq1  GAAGCAGCTCAGAAACCAAGGAAAAACCACCAGCCACAAAGGAGACAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCTCAGAAACCAAGGAAAAACCACCAGCCACAAAGGAGACAATA  850

seq1  AGTCCAGTCAGGAGAGATTTGGGACCTACCTTTAATCCTTAATAATGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTCAGGAGAGATTTGGGACCTACCTTTAATCCTTAATAATGGTT  900

seq1  CAGAAAACCATTTCTCTCTTGCTTTTATTGTCTCTGACAAGTCCAGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCATTTCTCTCTTGCTTTTATTGTCTCTGACAAGTCCAGCAAA  950

seq1  GGCACAGACCGGGCAAGCA-TTTTTATGCT-GGCCTCTTCAGATAGCTTT  998
       |||||||||||||||||| |||||||||| |||||||||||||||| ||
seq2  AGCACAGACCGGGCAAGCATTTTTTATGCTGGGCCTCTTCAGATAGC-TT  999

seq1  GTATAATTTACATTATTTTTAATTTCAGTAATAGCAACTAGCTGGCTAAG  1048
      |||||||||||| ||||||  |||||||||||||| ||||||||||  | 
seq2  GTATAATTTACA-TATTTT--ATTTCAGTAATAGC-ACTAGCTGGCCTAA  1045

seq1  GCAATAAGCACTTTTTAACAATGAATAAATAAAGAAATCTCTCATATTTC  1098
      || |||||||| ||||||| ||||||||||  |||||||||||||| |||
seq2  GC-ATAAGCAC-TTTTAAC-ATGAATAAAT-TAGAAATCTCTCATA-TTC  1090

seq1  AATTAAGTAACGGAACGAAATCGTAACGAG-CATGGCTGTT  1138
      |  || ||||||| ||| |||||||||||| ||||||||||
seq2  A--TAGGTAACGG-ACG-AATCGTAACGAGCCATGGCTGTT  1127


seq1: chr9_117229516_117230413
seq2: B6Ng01-308F01.g_66_967 (reverse)

seq1  TCACCTCCCCC---TCCCACACACAAACCTTTAGCTGCTACCAATAATGT  47
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TCACCTCCCCCCCTTCCCACACACAAACCTTTAGCTGCTACCAATAATGT  50

seq1  TACCATAAGGCTCATCCTAGACACAAATGTCCAAAGACTGCTCCAGTTTG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAGGCTCATCCTAGACACAAATGTCCAAAGACTGCTCCAGTTTG  100

seq1  GCAATGCCCTGTAGGAGAATGAGATAGATTCAAATGGTAGGCTTCTGAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCCTGTAGGAGAATGAGATAGATTCAAATGGTAGGCTTCTGAAG  150

seq1  GCTGAAGCC-TTTTTTTTTCAACAATGAAAAAAGCCAAAATGAATGAAAC  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCCTTTTTTTTTTCAACAATGAAAAAAGCCAAAATGAATGAAAC  200

seq1  CAAGCATTTCCTTAACTCCTTCCTTCCCAGTCCAGGGTGATGAAAGCCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTCCTTAACTCCTTCCTTCCCAGTCCAGGGTGATGAAAGCCAA  250

seq1  GTCCTTGAGGCTTCCAGTCCCCTCTTCTCCCATTAGACAACATGACACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGGCTTCCAGTCCCCTCTTCTCCCATTAGACAACATGACACTG  300

seq1  CATCCTTCACAGAATTATCTTCATAATGATGAACTAATGACTTCAAATGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCACAGAATTATCTTCATAATGATGAACTAATGACTTCAAATGG  350

seq1  CTTAGAAAATGCCAAGTACTTATGCAGACAAGATGATACTGACCTAGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAATGCCAAGTACTTATGCAGACAAGATGATACTGACCTAGAAA  400

seq1  CACATTTAGCAAACACGAATGGCTTAGATAAAATAGAGATATTATTTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAGCAAACACGAATGGCTTAGATAAAATAGAGATATTATTTAAA  450

seq1  TCTCACTAAACTGCCGAAGATCCTCAGATTATAGCCTACTTGTTCTGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTAAACTGCCGAAGATCCTCAGATTATAGCCTACTTGTTCTGATT  500

seq1  AATTTTACTATCTCTCCGGGAATGTGATAAGTAGATAAAATAATGTACCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTATCTCTCCGGGAATGTGATAAGTAGATAAAATAATGTACCT  550

seq1  CAAATCTCCCACTGACATTAAACAAATATGTGAAATAAACAGTACATCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCCCACTGACATTAAACAAATATGTGAAATAAACAGTACATCAC  600

seq1  ATGCTAAGCCTTGCTTTGAATATTAACTATTATTATGCATTTTCCTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCCTTGCTTTGAATATTAACTATTATTATGCATTTTCCTTTTT  650

seq1  TCTTTTTTCTTTGTAGTTCTTAAATTTTTTTTGGCTTTCTTACAAAAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTTGTAGTTCTTAAATTTTTTTTGGCTTTCTTACAAAAGGG  700

seq1  AATTCTCCCTTTGGGAACTCTTCTTATCAGGAGAGCATAAATTGTCATGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCCTTTGGGAACTCTTCTTATCAGGAGAGCATAAATTGTCATGT  750

seq1  GTGCTAACCATAGTTACTACCAAAACATATTTATTTTAGAAATATGCACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACCATAGTTACTACCAAAACATATTTATTTTAGAAATATGCACA  800

seq1  AATAAAAATAACATTTTAGAGGCCTCCCAATAGTTCCTCTTAGGTGTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAACATTTTAGAGGCCTCCCAATAGTTCCTCTTAGGTGTGAA  850

seq1  TTTTTCAAGAACTGCTAACACTTACTCTCCAGCCATCAAAGTAGAGGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGAACTGCTAACACTTACTCTCCAGCCATCAAAGTAGAGGAAT  900

seq1  TC  898
      ||
seq2  TC  902


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