BAC Information

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BAC

Clone NameB6Ng01-308H08
Chromosome9 (Build37)
Map Location 80,990,879 - 80,991,951
singlet/doubletsinglet
Overlap genenone
Upstream geneSenp6, LOC100041249, Myo6, Impg1, EG666534
Downstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H08.bB6Ng01-308H08.g
ACCGA100957GA100958
length1,2241,071
definitionB6Ng01-308H08.b B6Ng01-308H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgactgc
agatgctggcgtggaagtgtagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
agggaaggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaattcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagagaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
accatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgctggagcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atgggaggagctagagaaagtagccaaaggagctaaagggatctgcaacc
ctataggtggaacaacattatgaactaaccagtactccggagctcttgac
tcttgctgcatatattattcaaaagatgggcctagccggtcatcactggt
aagaggaggtccattgggacttgcaactttatatggctcaagttaccagg
tatcctatgtccaacatggggtagtgggtggtcagcgtgaatgcgcgcat
caacacactctaacttacgtacta
gaattcactcttcatttggcagttgcaaccatgagccctctaatcaatac
acatgtcgatttttccaattcaacgttaagcatctatttacttaaaatcc
ccagtgatttaattagaagtgtagtgtgtggaggaacatacaatttgcta
attactccaggcttattctgtaagtgagtagatggtttctgtactacact
gtcatgatttctagacaaatgttttctaggctgaaagaatgtgtttccct
ttgataattctctgtgtaatcccttctctctggtttttttacttcctctc
acctcaccaagtcttttgcttcttagccttggttttcttccagttaaaag
ttaacatcatagataccagatatccatgcaggaaaaaaataactaaataa
tctacattgcaagctctagaaagctaggtatctcttgttttctaaggaag
taatatttatttctaggtaagccaaagtcacatttaaggaaatctaatga
cttcttcttaaagcaccatgatataaataccattagcattagcctgtagt
cttgttttttacttgttttctgtttaaaaattagatacccaagatataag
atacaattgtgaaacacatgaatctcaagaagaacaaagaccaaagtgtg
gatactttgccccttcttagaattgggaaccaaacagccatggaaggagt
tatagagacaaagtttggagctgagacaaaaggatggaccatctagtgac
tgccataaccgtcgatccatcccataatcagcctccaaacgctggcacca
ttgcatacactagcaagattttgctgcaaggacccagatatagctgtctc
ttgtgaggctatgacggggcctagcaaacacagaagtggatgctcacagt
cagctattggatggatcacagggctcccaatggaggagctagagaaagta
cccaaggagctaaagggatctacgaccctataggtggaacacaatatgac
tactagtaccccagagctcgtgtctctagctgcatatgtatcagaagata
ggcctaggtctgccatcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80990879_80991951
seq2: B6Ng01-308H08.g_66_1136

seq1  GAATTCACTCTTCATTTGGCAGTTGCAACCATGAGCCCTCTAATCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTCATTTGGCAGTTGCAACCATGAGCCCTCTAATCAATAC  50

seq1  ACATGTCGATTTTTCCAATTCAACGTTAAGCATCTATTTACTTAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCGATTTTTCCAATTCAACGTTAAGCATCTATTTACTTAAAATCC  100

seq1  CCAGTGATTTAATTAGAAGTGTAGTGTGTGGAGGAACATACAATTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTTAATTAGAAGTGTAGTGTGTGGAGGAACATACAATTTGCTA  150

seq1  ATTACTCCAGGCTTATTCTGTAAGTGAGTAGATGGTTTCTGTACTACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCAGGCTTATTCTGTAAGTGAGTAGATGGTTTCTGTACTACACT  200

seq1  GTCATGATTTCTAGACAAATGTTTTCTAGGCTGAAAGAATGTGTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATTTCTAGACAAATGTTTTCTAGGCTGAAAGAATGTGTTTCCCT  250

seq1  TTGATAATTCTCTGTGTAATCCCTTCTCTCTGGTTTTTTTACTTCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATTCTCTGTGTAATCCCTTCTCTCTGGTTTTTTTACTTCCTCTC  300

seq1  ACCTCACCAAGTCTTTTGCTTCTTAGCCTTGGTTTTCTTCCAGTTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCAAGTCTTTTGCTTCTTAGCCTTGGTTTTCTTCCAGTTAAAAG  350

seq1  TTAACATCATAGATACCAGATATCCATGCAGGAAAAAAATAACTAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCATAGATACCAGATATCCATGCAGGAAAAAAATAACTAAATAA  400

seq1  TCTACATTGCAAGCTCTAGAAAGCTAGGTATCTCTTGTTTTCTAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTGCAAGCTCTAGAAAGCTAGGTATCTCTTGTTTTCTAAGGAAG  450

seq1  TAATATTTATTTCTAGGTAAGCCAAAGTCACATTTAAGGAAATCTAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTATTTCTAGGTAAGCCAAAGTCACATTTAAGGAAATCTAATGA  500

seq1  CTTCTTCTTAAAGCACCATGATATAAATACCATTAGCATTAGCCTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTAAAGCACCATGATATAAATACCATTAGCATTAGCCTGTAGT  550

seq1  CTTGTTTTTTACTTGTTTTCTGTTTAAAAATTAGATACCCAAGATATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTTACTTGTTTTCTGTTTAAAAATTAGATACCCAAGATATAAG  600

seq1  ATACAATTGTGAAACACATGAATCTCAAGAAGAACAAAGACCAAAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTGTGAAACACATGAATCTCAAGAAGAACAAAGACCAAAGTGTG  650

seq1  GATACTTTGCCCCTTCTTAGAATTGGGAACCAAACAGCCATGGAAGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTGCCCCTTCTTAGAATTGGGAACCAAACAGCCATGGAAGGAGT  700

seq1  TATAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGTGAC  750

seq1  TGCCATAACCGTCGATCCATCCCATAATCAGCCTCCAAACGCTGGCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAACCGTCGATCCATCCCATAATCAGCCTCCAAACGCTGGCACCA  800

seq1  TTGCATACACTAGCAAGATTTTGCTGCAAGGACCCAGATATAGCTGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACACTAGCAAGATTTTGCTGCAAGGACCCAGATATAGCTGTCTC  850

seq1  TTGTGAGGCTATGACGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTATGACGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGT  900

seq1  CAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTA  950

seq1  CCCAAGGAGCTAAAGGGATCTACGACCCTATAGGTGGAACAACAATATGA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CCCAAGGAGCTAAAGGGATCTACGACCCTATAGGTGGAAC-ACAATATG-  998

seq1  ACTACTAGTAACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAA  1050
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGTA--CCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAA  1046

seq1  GATA-GCCTA-GTCTGCCATCAGTG  1073
      |||| ||||| ||||||||||||||
seq2  GATAGGCCTAGGTCTGCCATCAGTG  1071