BAC Information

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BAC

Clone NameB6Ng01-308I10
Chromosome9 (Build37)
Map Location 10,416,343 - 10,562,850
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I10.bB6Ng01-308I10.g
ACCGA101004GA101005
length1,1031,176
definitionB6Ng01-308I10.b B6Ng01-308I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,561,719 - 10,562,850)(10,416,343 - 10,417,532)
sequence
gaattcctagtaattatataaatactacctagctttgttcattgctggtg
gtttttatactaggtgacgcttgtgacttcatattggcaagtggtgctgt
gctaacataaaaaacatgaagttattcctggcacatgcttggagctcttt
gaatgtttctgtgttttctctctgtccttactccaaagcatcccatgtac
caccccttcttttgctctctttcaaattcatggcgtctgtatagttttac
ttgtttgtatatgttttcacttttttattggataaccatagggtgtggtc
tttcctgaggcaaactgtttgtcctactgtcagcattacttgggtgcctg
tgtggggttgaggtctcatggactttcccctaacatgctcacatgtttgt
tgatgtcatccttgttcagtcatgtttgggaactcatgttgttgagcggt
tattcatgacattcctaggagagacaatgtcacagcaaattccatgatct
tcaaggtcttataacctttccaccctcttttccaaatgttccctgtggga
gtgttctgttgatgcatccgttgggacttgcctccacaagactctgttaa
gatccattgtcattttctgtgtagtttctccatttgtcgtggagaggatt
tttggtgatggctgaggacatgtgggtataagggcaaatgtttagaatgt
aattacggattatggtggaattgaacctacataatcaaagaaagtatgtt
tctactttgttggggttgattgtatatgtcacatttcccatatttgtgat
atctcgtgtcttctatatctaaatgaacagcacaagaattctagaaaaac
tgccttcactgtgtctgtatacatggtggtatggagatgatcagataata
acagagtaatcccccgtagtggccagtaaagaggcaagaaaggcataaga
ctgcccgaattgtctgacttgctgggaatgcacactatgcttgtgaacag
atgaggtcctaatttttcattaaagaaaaaatgttcagcctcaggaagga
tactaaagacattggaaggtcatgcagtcttggggtgagatcatcactct
gag

gaattcaccacagggggtaagattgaacagacaaaaccaggtggaaacag
ctttctgaagactcacttcttacatgattaggatatttatgaaccatgct
tttcacttaatgaccagaatctttgatagacatttttcaaggttccacac
tagcttctccatcttctgcagacaggcccagccttcacatttcttcctta
tactcgctgtttaataagcaatgtttacaaaaataatattacggataaat
gagtaaataatgtgtggttgttttgttgctaatcaattactggtattgag
gtgaaaggcttctacatatacatttcagaaacatgtatacatattcaagt
atatttaatgattacaccttagcacatattgatttatagaagtgaaatgt
caaatttatctctttacatatagaaatggcttcagatttcagactagcac
atttggagcactttcttattgagatctggggtgttaaaacagtcacatac
tatgtatattcatgggaggtgttacacggatggagaactggtgagaagac
tgaaatctattgtataattgctaggaaaactatagctcaataattgtaag
aggaggttatatttacttctcagtaggtttaatctcctgcctgtcctgtt
tgacagtttgcacttttcttcaggtaacactgtaacacacaaaatgtgat
catgttaggagaacacttgattcttgatgcacaaaaacagtctatggagt
caatgagacactttcatcacatagtgaatgcatggcagtacatggaagat
aagtgtttgtgtataaagctttataattcatggttccatacactaagcag
tacatgtgtatattacatggacaatatttgcattaatactaattcttctc
aaactatttggaataatttagatgttagaaataggtttataaataattta
atttttttctaaaatgacagcacccatgtatttttcagacttacatttta
tagcccccaaactttatttacagtaaaaacattgaagtttatttaatcac
ttctcattataattgctttctactgaatcacaatactgattccacaactc
ttaaattaataagctgggcatcgactgatttgcaagagattttgttccaa
atagcatttttcataaattaaagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10561719_10562850
seq2: B6Ng01-308I10.b_45_1147 (reverse)

seq1  CTCAGAGTGATGGATTTCATCACCCATGGACATGCAATGAAACTTTCATA  50
      ||||||||||| |||    ||||||   ||| ||| ||| | ||| ||  
seq2  CTCAGAGTGAT-GAT---CTCACCCCAAGAC-TGC-ATG-ACCTTCCAAT  43

seq1  GTCTTTTTAGTACTCTTTCTTGGAGGCTGAACATTTTTTTCTTTTATGTG  100
      |||  |||||||  ||| ||  ||||||||||| |||||||||| |||  
seq2  GTC--TTTAGTATCCTTCCT--GAGGCTGAACA-TTTTTTCTTTAATG--  86

seq1  AAAAAAATTTAAAGAAACTTCCAATCTTGGTTCACAGACCATAGTGTTGC  150
        |||||||   || | ||    ||||  ||||||| | ||||||| |||
seq2  --AAAAATT---AGGACCT---CATCT--GTTCACA-AGCATAGTG-TGC  124

seq1  ATTTCCCAGCAGTCCAGAC-ATCTGTGCAGTCTTTTTGCCTCTCTGGCCT  199
      | |||||||||   ||||| ||  | |||||| || ||||| ||| ||||
seq2  A-TTCCCAGCAAGTCAGACAATTCGGGCAGTC-TTATGCCTTTCTTGCCT  172

seq1  CTTT-CTTGCCACTACGGGGGA-TACTCTGTTATTATCTGATCATCCTCC  247
      |||| || |||||||||||||| |||||||||||||||||||||| ||||
seq2  CTTTACTGGCCACTACGGGGGATTACTCTGTTATTATCTGATCAT-CTCC  221

seq1  ATACCACCATGTATACAGACACAGTGAAGGCAGTTTTTCTAGAATTTCTT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATACCACCATGTATACAGACACAGTGAAGGCAGTTTTTCTAGAA-TTCTT  270

seq1  GTGCTGTTCATTTAAGATAATAGAAGACACGAGATATCACAAATATGGGA  347
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GTGCTGTTCATTT-AGAT-ATAGAAGACACGAGATATCACAAATATGGGA  318

seq1  AATGTGACATATACAATCAACCCCAACAAAGTAGAAACATACTTTCTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACATATACAATCAACCCCAACAAAGTAGAAACATACTTTCTTTG  368

seq1  ATTATGTAGGTTCAATTCCACCATAATCCGTAATTACATTCTAAACATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGGTTCAATTCCACCATAATCCGTAATTACATTCTAAACATTT  418

seq1  GCCCTTATACCCACATGTCCTCAGCCATCACCAAAAATCCTCTCCACGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTATACCCACATGTCCTCAGCCATCACCAAAAATCCTCTCCACGAC  468

seq1  AAATGGAGAAACTACACAGAAAATGACAATGGATCTTAACAGAGTCTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGAAACTACACAGAAAATGACAATGGATCTTAACAGAGTCTTGT  518

seq1  GGAGGCAAGTCCCAACGGATGCATCAACAGAACACTCCCACAGGGAACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAGTCCCAACGGATGCATCAACAGAACACTCCCACAGGGAACAT  568

seq1  TTGGAAAAGAGGGTGGAAAGGTTATAAGACCTTGAAGATCATGGAATTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGAGGGTGGAAAGGTTATAAGACCTTGAAGATCATGGAATTTG  618

seq1  CTGTGACATTGTCTCTCCTAGGAATGTCATGAATAACCGCTCAACAACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACATTGTCTCTCCTAGGAATGTCATGAATAACCGCTCAACAACAT  668

seq1  GAGTTCCCAAACATGACTGAACAAGGATGACATCAACAAACATGTGAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCAAACATGACTGAACAAGGATGACATCAACAAACATGTGAGCA  718

seq1  TGTTAGGGGAAAGTCCATGAGACCTCAACCCCACACAGGCACCCAAGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGGAAAGTCCATGAGACCTCAACCCCACACAGGCACCCAAGTAA  768

seq1  TGCTGACAGTAGGACAAACAGTTTGCCTCAGGAAAGACCACACCCTATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAGTAGGACAAACAGTTTGCCTCAGGAAAGACCACACCCTATGG  818

seq1  TTATCCAATAAAAAAGTGAAAACATATACAAACAAGTAAAACTATACAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAATAAAAAAGTGAAAACATATACAAACAAGTAAAACTATACAGA  868

seq1  CGCCATGAATTTGAAAGAGAGCAAAAGAAGGGGTGGTACATGGGATGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATGAATTTGAAAGAGAGCAAAAGAAGGGGTGGTACATGGGATGCTT  918

seq1  TGGAGTAAGGACAGAGAGAAAACACAGAAACATTCAAAGAGCTCCAAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGGACAGAGAGAAAACACAGAAACATTCAAAGAGCTCCAAGCA  968

seq1  TGTGCCAGGAATAACTTCATGTTTTTTATGTTAGCACAGCACCACTTGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGAATAACTTCATGTTTTTTATGTTAGCACAGCACCACTTGCC  1018

seq1  AATATGAAGTCACAAGCGTCACCTAGTATAAAAACCACCAGCAATGAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGTCACAAGCGTCACCTAGTATAAAAACCACCAGCAATGAACA  1068

seq1  AAGCTAGGTAGTATTTATATAATTACTAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGTAGTATTTATATAATTACTAGGAATTC  1103


seq1: chr9_10416343_10417532
seq2: B6Ng01-308I10.g_65_1240

seq1  GAATTCACCACAGGGGGTAAGATTGAACAGACAAAACCAGGTGGAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAGGGGGTAAGATTGAACAGACAAAACCAGGTGGAAACAG  50

seq1  CTTTCTGAAGACTCACTTCTTACATGATTAGGATATTTATGAACCATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAGACTCACTTCTTACATGATTAGGATATTTATGAACCATGCT  100

seq1  TTTCACTTAATGACCAGAATCTTTGATAGACATTTTTCAAGGTTCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTAATGACCAGAATCTTTGATAGACATTTTTCAAGGTTCCACAC  150

seq1  TAGCTTCTCCATCTTCTGCAGACAGGCCCAGCCTTCACATTTCTTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTCCATCTTCTGCAGACAGGCCCAGCCTTCACATTTCTTCCTTA  200

seq1  TACTCGCTGTTTAATAAGCAATGTTTACAAAAATAATATTACGGATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGCTGTTTAATAAGCAATGTTTACAAAAATAATATTACGGATAAAT  250

seq1  GAGTAAATAATGTGTGGTTGTTTTGTTGCTAATCAATTACTGGTATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATAATGTGTGGTTGTTTTGTTGCTAATCAATTACTGGTATTGAG  300

seq1  GTGAAAGGCTTCTACATATACATTTCAGAAACATGTATACATATTCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCTTCTACATATACATTTCAGAAACATGTATACATATTCAAGT  350

seq1  ATATTTAATGATTACACCTTAGCACATATTGATTTATAGAAGTGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATGATTACACCTTAGCACATATTGATTTATAGAAGTGAAATGT  400

seq1  CAAATTTATCTCTTTACATATAGAAATGGCTTCAGATTTCAGACTAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATCTCTTTACATATAGAAATGGCTTCAGATTTCAGACTAGCAC  450

seq1  ATTTGGAGCACTTTCTTATTGAGATCTGGGGTGTTAAAACAGTCACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGCACTTTCTTATTGAGATCTGGGGTGTTAAAACAGTCACATAC  500

seq1  TATGTATATTCATGGGAGGTGTTACACGGATGGAGAACTGGTGAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATTCATGGGAGGTGTTACACGGATGGAGAACTGGTGAGAAGAC  550

seq1  TGAAATCTATTGTATAATTGCTAGGAAAACTATAGCTCAATAATTGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTATTGTATAATTGCTAGGAAAACTATAGCTCAATAATTGTAAG  600

seq1  AGGAGGTTATATTTACTTCTCAGTAGGTTTAATCTCCTGCCTGTCCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTATATTTACTTCTCAGTAGGTTTAATCTCCTGCCTGTCCTGTT  650

seq1  TGACAGTTTGCACTTTTCTTCAGGTAACACTGTAACACACAAAATGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTGCACTTTTCTTCAGGTAACACTGTAACACACAAAATGTGAT  700

seq1  CATGTTAGGAGAACACTTGATTCTTGATGCACAAAAACAGTCTATGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAGGAGAACACTTGATTCTTGATGCACAAAAACAGTCTATGGAGT  750

seq1  CAATGAGACACTTTCATCACATAGTGAATGCATGGCAGTACATGGAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGACACTTTCATCACATAGTGAATGCATGGCAGTACATGGAAGAT  800

seq1  AAGTGTTTGTGTATAAAGCTTTATAATTCATGGTTCCATACACTAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGTGTATAAAGCTTTATAATTCATGGTTCCATACACTAAGCAG  850

seq1  TACATGTGTATATTACATGGACAATATTTGCATTAATACTAATTCTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTATATTACATGGACAATATTTGCATTAATACTAATTCTTCTC  900

seq1  AAACTATTTGGAATAATTTAGATGTTAGAAATAGGTTTATAAATAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTGGAATAATTTAGATGTTAGAAATAGGTTTATAAATAATTTA  950

seq1  ATTTTTTTCTAAAATGACAGCACCCATGTA-TTTTCAGACTTACATTTTA  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTTTTTCTAAAATGACAGCACCCATGTATTTTTCAGACTTACATTTTA  1000

seq1  TAAGCCCCCCAAACTTTATTTACAGTAAAAACATTGAGTTTAATTTAATC  1049
      ||   ||||||||||||||||||||||||||||||||  || ||||||||
seq2  TA--GCCCCCAAACTTTATTTACAGTAAAAACATTGAAGTTTATTTAATC  1048

seq1  ACCTTCTCAATATAATTTGCTTTCTACTGAAATCACAATACTTGATTTCC  1099
      | ||||||| ||||| ||||||||||||| ||||||||||| ||| ||||
seq2  A-CTTCTCATTATAA-TTGCTTTCTACTG-AATCACAATAC-TGA-TTCC  1093

seq1  ACAAACTCCTTAAATAAATAAGCCTGGGCATTTCAGATTTAATTTGGAAG  1149
      || |||| ||||||| |||||| ||||||||    ||  | ||||| |||
seq2  AC-AACT-CTTAAATTAATAAG-CTGGGCAT---CGA-CTGATTTGCAAG  1136

seq1  AGATTTTTGTTCAAAATAGCAATTTTTCAT-AATTAAAGATC  1190
      ||| |||||||| ||||||| ||||||||| |||||||||||
seq2  AGA-TTTTGTTCCAAATAGC-ATTTTTCATAAATTAAAGATC  1176


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