BAC Information

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BAC

Clone NameB6Ng01-308P13
Chromosome9 (Build37)
Map Location 106,981,986 - 107,115,105
singlet/doubletdoublet
Overlap geneDock3
Upstream geneLOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308P13.bB6Ng01-308P13.g
ACCGA101329GA101330
length1,15580
definitionB6Ng01-308P13.b B6Ng01-308P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,981,986 - 106,983,137)(107,115,026 - 107,115,105)
sequence
gaattcatgtacactatagtatataagtaggttagtatgcaacaacaatt
acattgtatagccacgaagaactttaattcatgtatattatagcatatga
gtagtttagtatataacaaggattacaatgtacagtcaggagttaataag
caaaacaaaccaggatagaatcttgtcccttcaaaaaaattaaatcaatt
tcaattgtatttctcttatttctagtaataacaactatcactctcagttg
gattcactcagatatattgggtttttttcccgatttattattatacttag
cagtttctttcttcaagtgtcacctacaaaaaggaaatgagagagagcta
ctatgtacccttgaatacataaaaattgttttatttgcactatcagttaa
tgtgactacttacaaaactctggctagtatagcatttcccttatggaatt
ctaaagcaaccactggattatcttccagtatctggttctaatgataaaac
ttttgagtccagtatgactactttcttttgtaagaaaagctgtttttcta
tttaaagacctttaagaatttctattcattcccggaatttttaaaaagtc
ttaatgtgcgttaatctggagtttgtttttaactccattcattactttaa
ctgaatagtgatccttttctatctggaagctgtgtattttggctctggga
cttctgcttccttataaacactacctcattgtctttgctctttttctggg
aattagatttgatcttgaacctactcagtaatgattctctaccagtgaat
atgttcagtgaattattttccatcttttttgttttattttcaagaaaatt
acataaaatttatctgagttttttagtttagaaatcacatttttccttct
ttctttattgactctaattctaaataatgagccttctttattctctttgt
agatactgggaggagtttgatttggttcttaaagtttttagtgaacttcc
atttctcttaaaggagaagtcattttcccttgggcccagatatttttaat
cctgggtctccctcttcataagaggacaatttattaaatatcaggtgaat
ctgatgctcatttataatataaatgcactggcaaaaaggtagaaagggtt
tgtga
tatttttaaagaagatactatggacttctgatatatgtattttgtacata
gtgggtgctttttttttatttttcgagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106981986_106983137
seq2: B6Ng01-308P13.b_48_1202

seq1  GAATTCATGTACACTATAGTATATAAGTAGGTTAGTATGCAACAACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTACACTATAGTATATAAGTAGGTTAGTATGCAACAACAATT  50

seq1  ACATTGTATAGCCACGAAGAACTTTAATTCATGTATATTATAGCATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATAGCCACGAAGAACTTTAATTCATGTATATTATAGCATATGA  100

seq1  GTAGTTTAGTATATAACAAGGATTACAATGTACAGTCAGGAGTTAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAGTATATAACAAGGATTACAATGTACAGTCAGGAGTTAATAAG  150

seq1  CAAAACAAACCAGGATAGAATCTTGTCCCTTCAAAAAAATTAAATCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACCAGGATAGAATCTTGTCCCTTCAAAAAAATTAAATCAATT  200

seq1  TCAATTGTATTTCTCTTATTTCTAGTAATAACAACTATCACTCTCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTATTTCTCTTATTTCTAGTAATAACAACTATCACTCTCAGTTG  250

seq1  GATTCACTCAGATATATTGGGTTTTTTTCCCGATTTATTATTATACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTCAGATATATTGGGTTTTTTTCCCGATTTATTATTATACTTAG  300

seq1  CAGTTTCTTTCTTCAAGTGTCACCTACAAAAAGGAAATGAGAGAGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTTCTTCAAGTGTCACCTACAAAAAGGAAATGAGAGAGAGCTA  350

seq1  CTATGTACCCTTGAATACATAAAAATTGTTTTATTTGCACTATCAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACCCTTGAATACATAAAAATTGTTTTATTTGCACTATCAGTTAA  400

seq1  TGTGACTACTTACAAAACTCTGGCTAGTATAGCATTTCCCTTATGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTACTTACAAAACTCTGGCTAGTATAGCATTTCCCTTATGGAATT  450

seq1  CTAAAGCAACCACTGGATTATCTTCCAGTATCTGGTTCTAATGATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAACCACTGGATTATCTTCCAGTATCTGGTTCTAATGATAAAAC  500

seq1  TTTTGAGTCCAGTATGACTACTTTCTTTTGTAAGAAAAGCTGTTTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTCCAGTATGACTACTTTCTTTTGTAAGAAAAGCTGTTTTTCTA  550

seq1  TTTAAAGACCTTTAAGAATTTCTATTCATTCCCGGAATTTTTAAAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACCTTTAAGAATTTCTATTCATTCCCGGAATTTTTAAAAAGTC  600

seq1  TTAATGTGCGTTAATCTGGAGTTTGTTTTTAACTCCATTCATTACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGCGTTAATCTGGAGTTTGTTTTTAACTCCATTCATTACTTTAA  650

seq1  CTGAATAGTGATCCTTTTCTATCTGGAAGCTGTGTATTTTGGCTCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGTGATCCTTTTCTATCTGGAAGCTGTGTATTTTGGCTCTGGGA  700

seq1  CTTCTGCTTCCTTATAAACACTACCTCATTGTCTTTGCTCTTTTTCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTCCTTATAAACACTACCTCATTGTCTTTGCTCTTTTTCTGGG  750

seq1  AATTAGATTTGATCTTGAACCTACTCAGTAATGATTCTCTACCAGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTTGATCTTGAACCTACTCAGTAATGATTCTCTACCAGTGAAT  800

seq1  ATGTTCAGTGAATTATTTTCCATCTTTTTTGTTTTATTTTCAAGAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGTGAATTATTTTCCATCTTTTTTGTTTTATTTTCAAGAAAATT  850

seq1  ACATAAAATTTATCTGAGTTTTTTAGTTTAGAAATCACATTTTTCCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATTTATCTGAGTTTTTTAGTTTAGAAATCACATTTTTCCTTCT  900

seq1  TTCTTTATTGACTCTAATTCTAAATAATGAGCCTTCTTTATTCTCTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGACTCTAATTCTAAATAATGAGCCTTCTTTATTCTCTTTGT  950

seq1  AGATACT-GGAGGAGTTTGATTT-GTTCTTAAAGTTTTTAGTGAACTTCC  998
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AGATACTGGGAGGAGTTTGATTTGGTTCTTAAAGTTTTTAGTGAACTTCC  1000

seq1  ATTTCTCTTAAAGGAGAAGTCA-TTTCCCTTGGGCCCAGATATTTTTAAT  1047
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTCTCTTAAAGGAGAAGTCATTTTCCCTTGGGCCCAGATATTTTTAAT  1050

seq1  CCT-GGTCTCCCTCTTCCATAAGA-GACAATTTATTTAAATATCAGTGAA  1095
      ||| |||||||||||| ||||||| ||||||||| |||||||||||   |
seq2  CCTGGGTCTCCCTCTT-CATAAGAGGACAATTTA-TTAAATATCAGGTGA  1098

seq1  ATCTGATTGCTCATTTATATATA-AAATGCACTGGAAAAAATGTAGAAA-  1143
      |||||| |||||||||||| ||| ||||||||||| ||||| ||||||| 
seq2  ATCTGA-TGCTCATTTATA-ATATAAATGCACTGGCAAAAAGGTAGAAAG  1146

seq1  GTTTTGTGA  1152
      | |||||||
seq2  GGTTTGTGA  1155

seq1: chr9_107115026_107115105
seq2: B6Ng01-308P13.g_73_152 (reverse)

seq1  TGTCTCGAAAAATAAAAAAAAAGCACCCACTATGTACAAAATACATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAATAAAAAAAAAGCACCCACTATGTACAAAATACATATAT  50

seq1  CAGAAGTCCATAGTATCTTCTTTAAAAATA  80
      ||||||||||||||||||||||||||||||
seq2  CAGAAGTCCATAGTATCTTCTTTAAAAATA  80