BAC Information

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BAC

Clone NameB6Ng01-309H06
Chromosome9 (Build37)
Map Location 20,518,848 - 20,661,081
singlet/doubletdoublet
Overlap geneOlfm2, Col5a3, Rdh8
Upstream geneOlfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1
Downstream geneA230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309H06.bB6Ng01-309H06.g
ACCGA101691GA101692
length1,1121,095
definitionB6Ng01-309H06.b B6Ng01-309H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,518,848 - 20,519,958)(20,660,012 - 20,661,081)
sequence
gaattcaggatgcagaggcaggtgggtctccatgagttcaaggccagcct
ggtctacagagtgagttccagggcagccagggctacacagagaaacctgt
ctgggagaacaaacaaacaaacaaacaaacaaataaatgtgttctgagaa
atgacagctgaggttgacctcaggcttactactattactactactactac
tccccacccccccacacacacacacacagagacatgaaagagaccaataa
tacccaaagataggaataagagatgatacatgaagataaggcagagacac
aagcaggacacaccagatttggagacacaggggaaagatgacagacccag
atagagtcacacacagttagtcaacaaacattcacaaagaacttacaatg
ggtaatgaacacacgatgaagacaaggagaaagaaaatcagtcaattaac
caggctagatggcaagggcagatagtcctagataactatttgggaagctg
aggcaggagcattgcttaagctcaagtatcagggccaggataagcaacac
acagacccctggggataaatggaggaaaagaggaaaacagagagaaacct
aaggagagagtaatagttgcgtagaaagtttaaaagcaggcaagcaagat
ggttcggcaagaaagtgagcttgctgctgctcaggccggatggcttcaat
ctccagaaaccacgggaaaaaaaacagatgtgtaggtgggcagaatccca
cctctcctacagtagggtgcggggtggaagcgggaatcctggccatactc
tggagtacgaagtgcagggagcacagagcagaccttgcctctcactgagg
tggacgcgggtggggagctgttgcacccgtgaagagcacttgttgctctt
cctggggttttgtgtctttgtgtttctgagacaggttctcactgtgtagc
ctaggctgggctggaactcgcactgtagcccaggctggctggaaacttac
agatgggctttaccttcaccgcccaatgatggactaagttgcaccgccac
caagccctggctgcactgtcactccttgcagtgaaccagtattcagatac
cattgctcacac
gaattcctgacccttctgcccccacctactgagtgttgagattacaggag
tacaccaccacacccagtttatactgttctggtaatggacagtataaact
agggttttatgcatgaaaggcacacactctataagacgatccatatctcc
atccatgttttattttgtttgttttttattatttatttttgtttttttga
gacagggtttctctgtgtagccctggctgtcttggaacccaccctgtaga
ctaggctgaccttgaactcacagagatcctctgcttctgtctcctgagtg
ctgggattaaagatacataccaccactgtctggctaaggttttgtttgtt
tgtttgtttgtttgtttgtttttacaatgttgatgagatggggtttcatg
tagttcagactgtcctggaactcactatatagctcaggctggctttgaat
tcatagtgttcctcctgccccagcctcttgcatactgagatgttaggcaa
gctctcccaagcttgactcacctgctgtttatgaaaacccctcttttaag
taccgatcataataagagacagggctccaagtactcagatttggttaact
gaggttcaacaaacattcttgaagtccctcaattccaatgaaagcatgtt
ttccaaatttcaccctggacatgaggatggagaagacaagagtggatatt
tgggggtcatggggactaatgcttttgaacaacccgtatttcacagctgc
agtctacctttgaccatatcatgtttttctcttccacatttctcccttcc
ctttttcttctcccaccccttccttcttttcactttatatttctctctac
cctattttcattctcttcctttgacaagggaatcactatttagcccaggt
taacttccgactcacactcttcttgcctcacctcccatatgctgagatgg
gctgttgtgtgcaatttgtgcctggccgctctgtgagttcaacagccacc
taagcttccagtctttatagtccctcccttgtattcatgcctcagccacc
ctgtcacatcttatccggtgtttatcctcagtaaatatttcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20518848_20519958
seq2: B6Ng01-309H06.b_46_1157

seq1  GAATTCAGGATGCAGAGGCAGGTGGGTCTCCATGAGTTCAAGGCCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATGCAGAGGCAGGTGGGTCTCCATGAGTTCAAGGCCAGCCT  50

seq1  GGTCTACAGAGTGAGTTCCAGGGCAGCCAGGGCTACACAGAGAAACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGGCAGCCAGGGCTACACAGAGAAACCTGT  100

seq1  CTGGGAGAACAAACAAACAAACAAACAAACAAATAAATGTGTTCTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAACAAACAAACAAACAAACAAACAAATAAATGTGTTCTGAGAA  150

seq1  ATGACAGCTGAGGTTGACCTCAGGCTTACTACTATTACTACTACTACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTGAGGTTGACCTCAGGCTTACTACTATTACTACTACTACTAC  200

seq1  TCCCCACCCCCCCACACACACACACACAGAGACATGAAAGAGACCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCCCCACACACACACACACAGAGACATGAAAGAGACCAATAA  250

seq1  TACCCAAAGATAGGAATAAGAGATGATACATGAAGATAAGGCAGAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAGATAGGAATAAGAGATGATACATGAAGATAAGGCAGAGACAC  300

seq1  AAGCAGGACACACCAGATTTGGAGACACAGGGGAAAGATGACAGACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGACACACCAGATTTGGAGACACAGGGGAAAGATGACAGACCCAG  350

seq1  ATAGAGTCACACACAGTTAGTCAACAAACATTCACAAAGAACTTACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTCACACACAGTTAGTCAACAAACATTCACAAAGAACTTACAATG  400

seq1  GGTAATGAACACACGATGAAGACAAGGAGAAAGAAAATCAGTCAATTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGAACACACGATGAAGACAAGGAGAAAGAAAATCAGTCAATTAAC  450

seq1  CAGGCTAGATGGCAAGGGCAGATAGTCCTAGATAACTATTTGGGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGATGGCAAGGGCAGATAGTCCTAGATAACTATTTGGGAAGCTG  500

seq1  AGGCAGGAGCATTGCTTAAGCTCAAGTATCAGGGCCAGGATAAGCAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGCATTGCTTAAGCTCAAGTATCAGGGCCAGGATAAGCAACAC  550

seq1  ACAGACCCCTGGGGATAAATGGAGGAAAAGAGGAAAACAGAGAGAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCCTGGGGATAAATGGAGGAAAAGAGGAAAACAGAGAGAAACCT  600

seq1  AAGGAGAGAGTAATAGTTGCGTAGAAAGTTTAAAAGCAGGCAAGCAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGTAATAGTTGCGTAGAAAGTTTAAAAGCAGGCAAGCAAGAT  650

seq1  GGTTCGGCAAGAAAGTGAGCTTGCTGCTGCTCAGGCCGGATGGCTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGCAAGAAAGTGAGCTTGCTGCTGCTCAGGCCGGATGGCTTCAAT  700

seq1  CTCCAGAAACCACGGGAAAAAAAACAGATGTGTAGGTGGGCAGAATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAACCACGGGAAAAAAAACAGATGTGTAGGTGGGCAGAATCCCA  750

seq1  CCTCTCCTACAGTAGGGTGCGGGGTGGAAGCGGGAATCCTGGCCATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTACAGTAGGGTGCGGGGTGGAAGCGGGAATCCTGGCCATACTC  800

seq1  TGGAGTACGAAGTGCAGGGAGCACAGAGCAGACCTTGCCTCTCACTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACGAAGTGCAGGGAGCACAGAGCAGACCTTGCCTCTCACTGAGG  850

seq1  TGGACGCGGGTGGGGAGCTGTTGCACCCGTGAAGAGCACTTGTTGCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCGGGTGGGGAGCTGTTGCACCCGTGAAGAGCACTTGTTGCTCTT  900

seq1  CCTGGGGTTTTGTGTCTTTGTGTTTCTGAGACAGGGTCTCACTGTGTAGC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGGGGTTTTGTGTCTTTGTGTTTCTGAGACAGGTTCTCACTGTGTAGC  950

seq1  CTAGGCTGGGCTGGAACTCGCACTGTAGCCCAGGCTGGCTGGAAACTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGGGCTGGAACTCGCACTGTAGCCCAGGCTGGCTGGAAACTTAC  1000

seq1  AGAT-GGCTTTACC-TCACCGCCCAATGATGGGACTAAAGGTTGCACCGC  1048
      |||| ||||||||| ||||||||||||||| |||||||  ||||||||||
seq2  AGATGGGCTTTACCTTCACCGCCCAATGAT-GGACTAA--GTTGCACCGC  1047

seq1  CACCAAG-CCTGGCTGCACTGTCACT-CTTGCAGTGGACCAGGTATCAGT  1096
      ||||||| |||||||||||||||||| ||||||||| |||||   |||| 
seq2  CACCAAGCCCTGGCTGCACTGTCACTCCTTGCAGTGAACCAGTATTCAGA  1097

seq1  TCCCATTGCTCACAC  1111
      | |||||||||||||
seq2  TACCATTGCTCACAC  1112

seq1: chr9_20660012_20661081
seq2: B6Ng01-309H06.g_85_1161 (reverse)

seq1  CAGTG-AATAATTACTGA-GATAAACACTGG-TAAGATGGTGAACAGGGT  47
      ||||| |||| ||||||| ||||||||| || |||||| ||| |||||||
seq2  CAGTGAAATATTTACTGAGGATAAACACCGGATAAGAT-GTG-ACAGGGT  48

seq1  GGCTGA-GCATG-ATAACAGGGAGGGAC-ATAAAGACTGGAAGC-TAGGT  93
      |||||| ||||| |||  |||||||||| ||||||||||||||| |||||
seq2  GGCTGAGGCATGAATACAAGGGAGGGACTATAAAGACTGGAAGCTTAGGT  98

seq1  GGCTGTTGAACTCACAGAAGCGGCCAGGCAC-AATTGCACACAACAG-CC  141
      ||||||||||||||||| ||||||||||||| ||||||||||||||| ||
seq2  GGCTGTTGAACTCACAG-AGCGGCCAGGCACAAATTGCACACAACAGCCC  147

seq1  ATCTCAGCATATGGGAGGTGAGGCAAGAAGAGTGTGAGTCGGAAGTTAAC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCATATGGGAGGTGAGGCAAGAAGAGTGTGAGTCGGAAGTTAAC  197

seq1  CTGGGCTAAATAGTGATTCCC-TGTCAAAGGAAGAGAATGAAAATAGGGT  240
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGGGCTAAATAGTGATTCCCTTGTCAAAGGAAGAGAATGAAAATAGGGT  247

seq1  AGAGAGAAATATAAAGTGAAAAGAAGGAAGGGGTGGGAGAAGAAAAAGGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATATAAAGTGAAAAGAAGGAAGGGGTGGGAGAAGAAAAAGGG  297

seq1  AAGGGAGAAATGTGGAAGAGAAAAACATGATATGGTCAAAGGTAGACTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAATGTGGAAGAGAAAAACATGATATGGTCAAAGGTAGACTGC  347

seq1  AGCTGTGAAATACGGGTTGTTCAAAAGCATTAGTCCCCATGACCCCCAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAAATACGGGTTGTTCAAAAGCATTAGTCCCCATGACCCCCAAA  397

seq1  TATCCACTCTTGTCTTCTCCATCCTCATGTCCAGGGTGAAATTTGGAAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTCTTGTCTTCTCCATCCTCATGTCCAGGGTGAAATTTGGAAAA  447

seq1  CATGCTTTCATTGGAATTGAGGGACTTCAAGAATGTTTGTTGAACCTCAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCATTGGAATTGAGGGACTTCAAGAATGTTTGTTGAACCTCAG  497

seq1  TTAACCAAATCTGAGTACTTGGAGCCCTGTCTCTTATTATGATCGGTACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAATCTGAGTACTTGGAGCCCTGTCTCTTATTATGATCGGTACT  547

seq1  TAAAAGAGGGGTTTTCATAAACAGCAGGTGAGTCAAGCTTGGGAGAGCTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGGGGTTTTCATAAACAGCAGGTGAGTCAAGCTTGGGAGAGCTT  597

seq1  GCCTAACATCTCAGTATGCAAGAGGCTGGGGCAGGAGGAACACTATGAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACATCTCAGTATGCAAGAGGCTGGGGCAGGAGGAACACTATGAAT  647

seq1  TCAAAGCCAGCCTGAGCTATATAGTGAGTTCCAGGACAGTCTGAACTACA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAGCCTGAGCTATATAGTGAGTTCCAGGACAGTCTGAACTACA  697

seq1  TGAAACCCCATCTCATCAACATTGTAAAAACAAACAAACAAACAAACAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCCATCTCATCAACATTGTAAAAACAAACAAACAAACAAACAAA  747

seq1  CAAACAAAACCTTAGCCAGACAGTGGTGGTATGTATCTTTAATCCCAGCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACCTTAGCCAGACAGTGGTGGTATGTATCTTTAATCCCAGCA  797

seq1  CTCAGGAGACAGAAGCAGAGGATCTCTGTGAGTTCAAGGTCAGCCTAGTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGACAGAAGCAGAGGATCTCTGTGAGTTCAAGGTCAGCCTAGTC  847

seq1  TACAGGGTGGGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGGGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  897

seq1  AAAAAAACAAAAATAAATAATAAAAAACAAACAAAATAAAACATGGATGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAATAAATAATAAAAAACAAACAAAATAAAACATGGATGG  947

seq1  AGATATGGATCGTCTTATAGAGTGTGTGCCTTTCATGCATAAAACCCTAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGATCGTCTTATAGAGTGTGTGCCTTTCATGCATAAAACCCTAG  997

seq1  TTTATACTGTCCATTACCAGAACAGTATAAACTGGGTGTGGTGGTGTACT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGTCCATTACCAGAACAGTATAAACTGGGTGTGGTGGTGTACT  1047

seq1  CCTGTAATCTCAACACTCAGTAGGTGGGGG  1070
      ||||||||||||||||||||||||||||||
seq2  CCTGTAATCTCAACACTCAGTAGGTGGGGG  1077