BAC Information

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BAC

Clone NameB6Ng01-310A04
Chromosome9 (Build37)
Map Location 41,831,740 - 41,941,362
singlet/doubletdoublet
Overlap geneSorl1
Upstream gene2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
Downstream geneSc5d, Tecta, Tbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A04.bB6Ng01-310A04.g
ACCGA102108GA102109
length795994
definitionB6Ng01-310A04.b B6Ng01-310A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,940,524 - 41,941,362)(41,831,740 - 41,832,728)
sequence
gaattcttttctttgagtaaatggctcctttagggtaaggtttgaactaa
cacagtgttatctggttggctgtgttaaagcatgctacatctgagcatta
gagaactgaaggcacaaaattccatcccaggaatgcacactttctcatct
ctattccagtttcagtgatggtggaagcctttccttgttcacagttgctc
tgctgtctgtgatcgactggtacatgcttttctagaaacgccactgtgca
gaacccaccctgagggcacacaattaacatgtaaaggccctcattaggag
tgcgtgttctcaggtgtgattagcactgaagcatcttggactggaatcca
tgctagacaagcgaacatcagctatcccaaactaaacctgaatcgtggta
aattaattagtataaaggatagtagaaatattttctcccattggtgagac
gtattttgtttaagaagtgtgctgcttaagtggatttacatgcatggccc
acaataatccagttagttaggggggtcagaggaatggctcaacagttgag
agcactggccactttcctagaagaccaagatttgattcccaacacccaca
tggcaactcgcaaacatctgtaactcctgttatagggaatctaaagccct
cttctggcctcttgaagatatcagaaatggatgtgtcacacatacatata
ggcaaagatgcccatacatgtaaagttagatagatagatagatagataga
tagatagatagatagatagatagatagatagatggatggatggat

gaattcagccatcaatccactaacttcatgccagaccgcctttcctggat
gctggctgacaggaatatgaagctagaaactggaggggggtggtggcaac
aagatgaaggttgggagatgtgggggaactagggggtgtcaagtcaggtt
ctctttttaaaaaattattcaaattcaaactggctaaagagaaggctcct
actgtcattgacttggtcacagcttggaagtcaagactttttagacctct
gccaaccctgattcagaacatctgggccattccaagctctgtggtggcag
acagagaaccgtttgctctgacagaatttagtcagttacgtctggaaggc
aagctgctccctggttgtatagaggaacacacagaacaaaaggaagctgg
acctgagggaagctgtatcatttgccatcaaagggagggccacaactagg
acccttgcatgaagagctcaggtctgctgtgcagagccagaggccttaca
accgggaccagagtacctctcggtacctaacagggatcatttccacctgg
gacattttctaatatccaaaactgagggagcactgaggtcagaaggggca
ggggcgaggggaggagcctagggaaaaccagggtcgcaccttctttgaca
caggtgttgttcttcctttgatagccctgagggcagtcacacatcaggtc
cccagaggggaggacactgctggccacaccttctggacacctgcagcttt
tgctgttgttggccttagggaggcacagtagactgcagggctgagggaca
cagcgttgcttcctggggagaaaacacagaagtccgcacttaggttaata
cgtgcatgcggcgaaggcagccagagagacgtgagccacttgaaagtcgt
cttacagaatgaggcagtggggagcttataaaacctctgaagcattcgcc
acatggataaaccttctgttgggaggccctaagtacggtcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41940524_41941362
seq2: B6Ng01-310A04.b_46_840 (reverse)

seq1  ATCCATCCATCCATCTATCTATCCATCCATCCATCCATCCATCCATCCAT  50
                                                  ||||||
seq2  --------------------------------------------ATCCAT  6

seq1  CCATCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCT  100
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  56

seq1  ATCTATCTATCTAACTTTACATGTATGGGCATCTTTGCCTATATGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTAACTTTACATGTATGGGCATCTTTGCCTATATGTATGT  106

seq1  GTGACACATCCATTTCTGATATCTTCAAGAGGCCAGAAGAGGGCTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACATCCATTTCTGATATCTTCAAGAGGCCAGAAGAGGGCTTTAGA  156

seq1  TTCCCTATAACAGGAGTTACAGATGTTTGCGAGTTGCCATGTGGGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATAACAGGAGTTACAGATGTTTGCGAGTTGCCATGTGGGTGTTG  206

seq1  GGAATCAAATCTTGGTCTTCTAGGAAAGTGGCCAGTGCTCTCAACTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAATCTTGGTCTTCTAGGAAAGTGGCCAGTGCTCTCAACTGTTG  256

seq1  AGCCATTCCTCTGACCCCCCTAACTAACTGGATTATTGTGGGCCATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCTCTGACCCCCCTAACTAACTGGATTATTGTGGGCCATGCAT  306

seq1  GTAAATCCACTTAAGCAGCACACTTCTTAAACAAAATACGTCTCACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCACTTAAGCAGCACACTTCTTAAACAAAATACGTCTCACCAAT  356

seq1  GGGAGAAAATATTTCTACTATCCTTTATACTAATTAATTTACCACGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAATATTTCTACTATCCTTTATACTAATTAATTTACCACGATTC  406

seq1  AGGTTTAGTTTGGGATAGCTGATGTTCGCTTGTCTAGCATGGATTCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGTTTGGGATAGCTGATGTTCGCTTGTCTAGCATGGATTCCAGT  456

seq1  CCAAGATGCTTCAGTGCTAATCACACCTGAGAACACGCACTCCTAATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCTTCAGTGCTAATCACACCTGAGAACACGCACTCCTAATGAG  506

seq1  GGCCTTTACATGTTAATTGTGTGCCCTCAGGGTGGGTTCTGCACAGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTACATGTTAATTGTGTGCCCTCAGGGTGGGTTCTGCACAGTGGC  556

seq1  GTTTCTAGAAAAGCATGTACCAGTCGATCACAGACAGCAGAGCAACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAAAAGCATGTACCAGTCGATCACAGACAGCAGAGCAACTGTG  606

seq1  AACAAGGAAAGGCTTCCACCATCACTGAAACTGGAATAGAGATGAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAAGGCTTCCACCATCACTGAAACTGGAATAGAGATGAGAAAG  656

seq1  TGTGCATTCCTGGGATGGAATTTTGTGCCTTCAGTTCTCTAATGCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCCTGGGATGGAATTTTGTGCCTTCAGTTCTCTAATGCTCAGA  706

seq1  TGTAGCATGCTTTAACACAGCCAACCAGATAACACTGTGTTAGTTCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATGCTTTAACACAGCCAACCAGATAACACTGTGTTAGTTCAAAC  756

seq1  CTTACCCTAAAGGAGCCATTTACTCAAAGAAAAGAATTC  839
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTAAAGGAGCCATTTACTCAAAGAAAAGAATTC  795


seq1: chr9_41831740_41832728
seq2: B6Ng01-310A04.g_68_1061

seq1  GAATTCAGCCATCAATCCACTAACTTCATGCCAGACCGCCTTTCCTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCATCAATCCACTAACTTCATGCCAGACCGCCTTTCCTGGAT  50

seq1  GCTGGCTGACAGGAATATGAAGCTAGAAACTGGAGGGGGGTGGTGGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGACAGGAATATGAAGCTAGAAACTGGAGGGGGGTGGTGGCAAC  100

seq1  AAGATGAAGGTTGGGAGATGTGGGGGAACTAGGGGGTGTCAAGTCAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGGTTGGGAGATGTGGGGGAACTAGGGGGTGTCAAGTCAGGTT  150

seq1  CTCTTTTTAAAAAATTATTCAAATTCAAACTGGCTAAAGAGAAGGCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAAAAAATTATTCAAATTCAAACTGGCTAAAGAGAAGGCTCCT  200

seq1  ACTGTCATTGACTTGGTCACAGCTTGGAAGTCAAGACTTTTTAGACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTGACTTGGTCACAGCTTGGAAGTCAAGACTTTTTAGACCTCT  250

seq1  GCCAACCCTGATTCAGAACATCTGGGCCATTCCAAGCTCTGTGGTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCTGATTCAGAACATCTGGGCCATTCCAAGCTCTGTGGTGGCAG  300

seq1  ACAGAGAACCGTTTGCTCTGACAGAATTTAGTCAGTTACGTCTGGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACCGTTTGCTCTGACAGAATTTAGTCAGTTACGTCTGGAAGGC  350

seq1  AAGCTGCTCCCTGGTTGTATAGAGGAACACACAGAACAAAAGGAAGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCCCTGGTTGTATAGAGGAACACACAGAACAAAAGGAAGCTGG  400

seq1  ACCTGAGGGAAGCTGTATCATTTGCCATCAAAGGGAGGGCCACAACTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGGAAGCTGTATCATTTGCCATCAAAGGGAGGGCCACAACTAGG  450

seq1  ACCCTTGCATGAAGAGCTCAGGTCTGCTGTGCAGAGCCAGAGGCCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGCATGAAGAGCTCAGGTCTGCTGTGCAGAGCCAGAGGCCTTACA  500

seq1  ACCGGGACCAGAGTACCTCTCGGTACCTAACAGGGATCATTTCCACCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGACCAGAGTACCTCTCGGTACCTAACAGGGATCATTTCCACCTGG  550

seq1  GACATTTTCTAATATCCAAAACTGAGGGAGCACTGAGGTCAGAAGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCTAATATCCAAAACTGAGGGAGCACTGAGGTCAGAAGGGGCA  600

seq1  GGGGCGAGGGGAGGAGCCTAGGGAAAACCAGGGTCGCACCTTCTTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGAGGGGAGGAGCCTAGGGAAAACCAGGGTCGCACCTTCTTTGACA  650

seq1  CAGGTGTTGTTCTTCCTTTGATAGCCCTGAGGGCAGTCACACATCAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTGTTCTTCCTTTGATAGCCCTGAGGGCAGTCACACATCAGGTC  700

seq1  CCCAGAGGGGAGGACACTGCTGGCCACACCTTCTGGACACCTGCAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGGAGGACACTGCTGGCCACACCTTCTGGACACCTGCAGCTTT  750

seq1  TGCTGTTGTTGGCCTTAGGGAGGCACAGTAGACTGCAGGGCTGAGGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTTGGCCTTAGGGAGGCACAGTAGACTGCAGGGCTGAGGGACA  800

seq1  CAAGCGTTGCTTCCTGGGGAGAAAACACAGAAGT-CGCACTTAGGTTAAT  849
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  C-AGCGTTGCTTCCTGGGGAGAAAACACAGAAGTCCGCACTTAGGTTAAT  849

seq1  ACGTGCATGCGGCG-AGGCAGCCAGAGAGACGTGAGCCAC-TGAAAGTCG  897
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  ACGTGCATGCGGCGAAGGCAGCCAGAGAGACGTGAGCCACTTGAAAGTCG  899

seq1  TCTTACAG-ATGAGGCAGTGGGGAGCTTAGAAAACCTCTGAAGCATCAGC  946
      |||||||| |||||||||||||||||||| ||||||||||||||||  ||
seq2  TCTTACAGAATGAGGCAGTGGGGAGCTTATAAAACCTCTGAAGCATTCGC  949

seq1  CACATTGATAAACC-TCTGTTGGGAGG-CCTAAGTAAGGTCCTCA  989
      ||||| |||||||| |||||||||||| |||||||| ||||||||
seq2  CACATGGATAAACCTTCTGTTGGGAGGCCCTAAGTACGGTCCTCA  994


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