BAC Information

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BAC

Clone NameB6Ng01-310H09
Chromosome9 (Build37)
Map Location 28,823,844 - 28,955,685
singlet/doubletdoublet
Overlap geneHnt, LOC625222
Upstream geneOpcml
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H09.bB6Ng01-310H09.g
ACCGA102431GA102432
length1,075313
definitionB6Ng01-310H09.b B6Ng01-310H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,823,844 - 28,824,927)(28,955,373 - 28,955,685)
sequence
gaattctccaaagactcaagaagcaactgtaagaaacttctgtatcagtg
ttgtcatttcaggctaatatactctttacaaccttggttgaggaagagga
gaggaagtgagaagagattccagtaaagaaatcgtgattccttttgcatg
gctgttgtttatttagtatcaattccaggccaatgtttgtcagatctttt
cgcgctagaacgctataattactgtgcaaagcatctcagagaccagtgtc
acacttaatattcccattaattttaaatggtagtccctggtacatatgtg
tggcaattggtgtcatattttaattaggcttgccctacaccatctgaaat
taataatagctcaaattaccagtgtaatttataaattaacagtgcctcag
cattaggaaataaattagctctggacagctggttctgggttgggctccac
tgtcactctgataattggtgggactttgggtctttctgggccaggtagca
taccaccaagacagagaaacaagaagaaccagttatctttggacacttct
tttctccaattcatgtctgtgtcttttggtttttgttttgaatctagata
ggtgatctagatatgcttgctgtgatcacactgggattatcagaagctga
gctgtggtgaacttaatctgtggacatcaaaaaaaaaataatgttaggaa
ggagtatagtcatgagctgacatgcaagctgggaaatggtcattggcatc
aagaactcatcaagtattctgcaagaacatggtgggtaggagtgaccgtg
aaaatccatctattcttgccaagcaatgtgtaaggaaagaagcagatggc
ttaggatttaggcaaggcatgtggtgtcgattgatccaaatatttaggta
ttcaagtcatacaataccaagagacttcatttttaccatcataggtgctc
agacaaagtgagaaactgaagaacccatatgatttcatcgatcccagtaa
acaaggtctgaaaagcagttcattgcatcaaagagggttataaatttact
ttcactgccttcacttctctaatgg

acagtcatcaaactctatcctcttcttggatgaatatttctggataacaa
gacttcacgttgatctgatgtggcttttccgaaccagggaagcaaggacc
tttattttcccctgcagcatgttggagggagttcagcaacactgagtcct
gagatgtgggaggtttctgctttgaaaataaagtagttaataaaggtgcc
cagcactggtactagagactgatttaatgcacaatgtatacatgtaatat
tttaattaatggtatatataaagttctcagtgactgtgtgtggggggagt
ttatatgtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28823844_28824927
seq2: B6Ng01-310H09.b_46_1120

seq1  GAATTCTCCAAAGACTCAAGAAGCAACTGTAAGAAACTTCTGTATCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAGACTCAAGAAGCAACTGTAAGAAACTTCTGTATCAGTG  50

seq1  TTGTCATTTCAGGCTAATATACTCTTTACAACCTTGGTTGAGGAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTCAGGCTAATATACTCTTTACAACCTTGGTTGAGGAAGAGGA  100

seq1  GAGGAAGTGAGAAGAGATTCCAGTAAAGAAATCGTGATTCCTTTTGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGAGAAGAGATTCCAGTAAAGAAATCGTGATTCCTTTTGCATG  150

seq1  GCTGTTGTTTATTTAGTATCAATTCCAGGCCAATGTTTGTCAGATCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTTATTTAGTATCAATTCCAGGCCAATGTTTGTCAGATCTTTT  200

seq1  CGCGCTAGAACGCTATAATTACTGTGCAAAGCATCTCAGAGACCAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTAGAACGCTATAATTACTGTGCAAAGCATCTCAGAGACCAGTGTC  250

seq1  ACACTTAATATTCCCATTAATTTTAAATGGTAGTCCCTGGTACATATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAATATTCCCATTAATTTTAAATGGTAGTCCCTGGTACATATGTG  300

seq1  TGGCAATTGGTGTCATATTTTAATTAGGCTTGCCCTACACCATCTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTGGTGTCATATTTTAATTAGGCTTGCCCTACACCATCTGAAAT  350

seq1  TAATAATAGCTCAAATTACCAGTGTAATTTATAAATTAACAGTGCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGCTCAAATTACCAGTGTAATTTATAAATTAACAGTGCCTCAG  400

seq1  CATTAGGAAATAAATTAGCTCTGGACAGCTGGTTCTGGGTTGGGCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAAATAAATTAGCTCTGGACAGCTGGTTCTGGGTTGGGCTCCAC  450

seq1  TGTCACTCTGATAATTGGTGGGACTTTGGGTCTTTCTGGGCCAGGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTGATAATTGGTGGGACTTTGGGTCTTTCTGGGCCAGGTAGCA  500

seq1  TACCACCAAGACAGAGAAACAAGAAGAACCAGTTATCTTTGGACACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCAAGACAGAGAAACAAGAAGAACCAGTTATCTTTGGACACTTCT  550

seq1  TTTCTCCAATTCATGTCTGTGTCTTTTGGTTTTTGTTTTGAATCTAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAATTCATGTCTGTGTCTTTTGGTTTTTGTTTTGAATCTAGATA  600

seq1  GGTGATCTAGATATGCTTGCTGTGATCACACTGGGATTATCAGAAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCTAGATATGCTTGCTGTGATCACACTGGGATTATCAGAAGCTGA  650

seq1  GCTGTGGTGAACTTAATCTGTGGACATCAAAAAAAAAATAATGTTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTGAACTTAATCTGTGGACATCAAAAAAAAAATAATGTTAGGAA  700

seq1  GGAGTATAGTCATGAGCTGACATGCAAGCTGGGAAATGGTCATTGGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATAGTCATGAGCTGACATGCAAGCTGGGAAATGGTCATTGGCATC  750

seq1  AAGAACTCATCAAGTATTCTGCAAGAACATGGTGGGTAGGAGTGACCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCATCAAGTATTCTGCAAGAACATGGTGGGTAGGAGTGACCGTG  800

seq1  AAAATCCATCTATTCTTGCCAAGCAATGTGTAAGGAAAGAAGCAGATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATCTATTCTTGCCAAGCAATGTGTAAGGAAAGAAGCAGATGGC  850

seq1  TTAGGATTTAGGCAAGGCATGTGGTGTCGATTGATCCAAATATTTAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTTAGGCAAGGCATGTGGTGTCGATTGATCCAAATATTTAGGTA  900

seq1  TTCAAGTCATACAAATACCAAAGAGACTTCATTTTTACCATCATAGGTGC  950
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTCAAGTCATAC-AATACC-AAGAGACTTCATTTTTACCATCATAGGTGC  948

seq1  TCAGACAAAGTGAGAAACTGAAGAACCCATATGATTCCATCGATCCCAGT  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGACAAAGTGAGAAACTGAAGAACCCATATGATTTCATCGATCCCAGT  998

seq1  AAACAAGGTCTGGAAAAAGCAGTTCATTTGCATCAAAGAGGGTTATAAAT  1050
      ||||||||||||  |||||||||||| |||||||||||||||||||||| 
seq2  AAACAAGGTCTG--AAAAGCAGTTCA-TTGCATCAAAGAGGGTTATAAA-  1044

seq1  TTTACTTTTCACTGCTTTCACTTTCTCTTAATGG  1084
      ||||| ||||||||| ||||| ||||| ||||||
seq2  TTTAC-TTTCACTGCCTTCAC-TTCTC-TAATGG  1075


seq1: chr9_28955373_28955685
seq2: B6Ng01-310H09.g_72_384 (reverse)

seq1  ACACCACATATAAACTCCCCCCACACACAGTCACTGAGAACTTTATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACATATAAACTCCCCCCACACACAGTCACTGAGAACTTTATATAT  50

seq1  ACCATTAATTAAAATATTACATGTATACATTGTGCATTAAATCAGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAATTAAAATATTACATGTATACATTGTGCATTAAATCAGTCTCT  100

seq1  AGTACCAGTGCTGGGCACCTTTATTAACTACTTTATTTTCAAAGCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAGTGCTGGGCACCTTTATTAACTACTTTATTTTCAAAGCAGAAA  150

seq1  CCTCCCACATCTCAGGACTCAGTGTTGCTGAACTCCCTCCAACATGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACATCTCAGGACTCAGTGTTGCTGAACTCCCTCCAACATGCTGC  200

seq1  AGGGGAAAATAAAGGTCCTTGCTTCCCTGGTTCGGAAAAGCCACATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAATAAAGGTCCTTGCTTCCCTGGTTCGGAAAAGCCACATCAGA  250

seq1  TCAACGTGAAGTCTTGTTATCCAGAAATATTCATCCAAGAAGAGGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGTGAAGTCTTGTTATCCAGAAATATTCATCCAAGAAGAGGATAGA  300

seq1  GTTTGATGACTGT  313
      |||||||||||||
seq2  GTTTGATGACTGT  313


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