BAC Information

Click to search

BAC

Clone NameB6Ng01-310J02
Chromosome9 (Build37)
Map Location 66,504,071 - 66,644,114
singlet/doubletdoublet
Overlap geneCar12, Aph1b
Upstream geneRbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
Downstream geneLOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J02.bB6Ng01-310J02.g
ACCGA102509GA102510
length1,1541,095
definitionB6Ng01-310J02.b B6Ng01-310J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,642,960 - 66,644,114)(66,504,071 - 66,505,154)
sequence
gaattctatgtgttttttacatggattctggcatttctctatgcatcagg
ttttgtaatatatatgtcaagtattacagctttcacctctatattctttc
tccatcagcatgtaatccaggtataaaagctaagcctaggaacagtgggg
ctcaaggtgatgaacaaaactccatcagtaactgagcagggacaaaccct
aggcctaatgtctggagcggctgactctgactacacttataacacctcgg
agccccgcccactacattaccaggtctccagaacttcggctcgctttggc
tggagtagggcggcactctgagcttgctctggctggagtagggcggcgct
ctgagctcgctctgcaggcgctgacaggtctgggagcgactcaaagcccc
gcctcccaggctccgacctggctccggtttgactgggcgtgggactcctc
caggctctccgccttccgacctccgttccctgttctgacaggatctgtgc
tccgaagccacgcccctcctctgccctcggagcacctcgagtcccctgcc
gagctccgcccagcaacccgcttttacaggccaaggagcagctcaggccc
caactcccgaaccctgccttgtcccgtgtgactagaggacctcgaggtcc
tgcatgccaaccctcgctctgccgtccactctgataggctatggaactct
tccaggcctggcctcccgaagctccctcctgttgcctctttgactagggc
accgaaggctccgcctctcgagccccgtcccgccctcggcatctccagac
cccgcctcacgggctccgcctcgtccactgctctgacggagcaccggagc
ctcgccacccagccccgccccgtatccaggacccgctgtccattgggcac
tgcagggccctcgggcccccgcgactggctcccgaggtcgtcatgacggc
tgcggtgttctttgggttgcgccttcatcgccttcgggcccgcgctcgct
ctttatgtcttcaacatcgccaccgaccctttgcgagtcatcttcctcat
cgccaggtggagctgcgctgtgtcccgggacggcgcgggtccctcccttc
ctctgggttcccacgacccaggaatccaattctccaaggctccagctgtg
gtgc
gaattctcagtagaactcctgcaggaataaagtatcctttacatcatgaa
caggtgacataagttgtgccattcctgaggattgcaactttgatgaaaag
gctgtgtcttccaggctgtgctatgttagcaggcatgagccattatgcct
ggcttatgtggtcccaggtattgaacccagggccttatgcatgctaggaa
aactctaccaactgagccatatctaagcccacagatggtatttgctgagt
taaggcttgtggaatgaaccagggctgtaggggctagggaagaggtgagg
cttaagcactagggtgagaggacctggcagcagccatttcaacactgaaa
acccagtagatttactagaggattctaagaatgtcctcactgccaggacg
ccttcccctcactccaactgtattagaatgggggagcgaggagatgagtt
gttgatagcaggtctcatattttaaactcccaggtgcgtgcaaccagcta
acaaaactaacttctgctatctcttccttctcttcctttggggtcaggac
ttctcaaaaggtacctaatggtgacattcattcctacatctggaaacaag
gagccaggaagatactttgagacagatgttcagaccccccctgtccgccc
ccccccccatgcttcccgtttcttgattgtgtttaggtccaaactgttaa
gtgacatcatgtgaaggctaagatggtcaaattatagcatcatgtcagtc
ttccctccctccccatccccctccccaagcacaaaggagcatagttttaa
aaacccctccttaatgatagtgatgtactgaaatgttgttgaagctgcct
gttccaaaacatcaacaatatacttaaatgtataataagcacattatgca
atttaaccttgggggttagaacagagactttgtcatccttggacaatgct
gcactgtcagcgagaaggcttccaaggaagcccacgtggacactctctgg
gcagccaggtcacactggggctctttggcacgggcacatttgaaataatc
tggcatggcatgaccatgaataatgtctagggttatgtactgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66642960_66644114
seq2: B6Ng01-310J02.b_46_1199 (reverse)

seq1  GCACCACAAGCTGGAGCCCCTGGGAGATGGGGATCCCGGGGTCGTGGGAA  50
      ||||||| ||||||||  ||| |||||   |||| || ||||||||||||
seq2  GCACCAC-AGCTGGAG--CCTTGGAGAATTGGATTCCTGGGTCGTGGGAA  47

seq1  CCCAG-GAGAGGGAGGGAACCCGCGGCGT-CCGGGACACAGCGCAGCCTC  98
      ||||| |  |||||||| ||||||| ||| |||||||||||||||||  |
seq2  CCCAGAGGAAGGGAGGG-ACCCGCGCCGTCCCGGGACACAGCGCAGCTCC  96

seq1  ACCCGGCGATGAGGAAGATGACTCGCAAAGGGTCGGTGGCGATGGTGAAG  148
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCTGGCGATGAGGAAGATGACTCGCAAAGGGTCGGTGGCGATGTTGAAG  146

seq1  ACATAAAGAGCGAGCGCGGGCCCGAAGGCGATGAAGGCGCAA-CCAAAGA  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATAAAGAGCGAGCGCGGGCCCGAAGGCGATGAAGGCGCAACCCAAAGA  196

seq1  ACACCGCAGCCGTCATGACGACCTCGGGAGCCAGTCGCGGGGGCCCGAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCAGCCGTCATGACGACCTCGGGAGCCAGTCGCGGGGGCCCGAGG  246

seq1  GCCCTGCAGTGCCCAATGGACAGCGGGTCCTGGATACGGGGCGGGGCTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAGTGCCCAATGGACAGCGGGTCCTGGATACGGGGCGGGGCTGG  296

seq1  GTGGCGAGGCTCCGGTGCTCCGTCAGAGCAGTGGACGAGGCGGAGCCCGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGAGGCTCCGGTGCTCCGTCAGAGCAGTGGACGAGGCGGAGCCCGT  346

seq1  GAGGCGGGGTCTGGAGATGCCGAGGGCGGGACGGGGCTCGAGAGGCGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGGGTCTGGAGATGCCGAGGGCGGGACGGGGCTCGAGAGGCGGAG  396

seq1  CCTTCGGTGCCCTAGTCAAAGAGGCAACAGGAGGGAGCTTCGGGAGGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGTGCCCTAGTCAAAGAGGCAACAGGAGGGAGCTTCGGGAGGCCA  446

seq1  GGCCTGGAAGAGTTCCATAGCCTATCAGAGTGGACGGCAGAGCGAGGGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAAGAGTTCCATAGCCTATCAGAGTGGACGGCAGAGCGAGGGTT  496

seq1  GGCATGCAGGACCTCGAGGTCCTCTAGTCACACGGGACAAGGCAGGGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCAGGACCTCGAGGTCCTCTAGTCACACGGGACAAGGCAGGGTTC  546

seq1  GGGAGTTGGGGCCTGAGCTGCTCCTTGGCCTGTAAAAGCGGGTTGCTGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGGGCCTGAGCTGCTCCTTGGCCTGTAAAAGCGGGTTGCTGGG  596

seq1  CGGAGCTCGGCAGGGGACTCGAGGTGCTCCGAGGGCAGAGGAGGGGCGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTCGGCAGGGGACTCGAGGTGCTCCGAGGGCAGAGGAGGGGCGTG  646

seq1  GCTTCGGAGCACAGATCCTGTCAGAACAGGGAACGGAGGTCGGAAGGCGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGGAGCACAGATCCTGTCAGAACAGGGAACGGAGGTCGGAAGGCGG  696

seq1  AGAGCCTGGAGGAGTCCCACGCCCAGTCAAACCGGAGCCAGGTCGGAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGGAGGAGTCCCACGCCCAGTCAAACCGGAGCCAGGTCGGAGCC  746

seq1  TGGGAGGCGGGGCTTTGAGTCGCTCCCAGACCTGTCAGCGCCTGCAGAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCGGGGCTTTGAGTCGCTCCCAGACCTGTCAGCGCCTGCAGAGC  796

seq1  GAGCTCAGAGCGCCGCCCTACTCCAGCCAGAGCAAGCTCAGAGTGCCGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAGCGCCGCCCTACTCCAGCCAGAGCAAGCTCAGAGTGCCGCC  846

seq1  CTACTCCAGCCAAAGCGAGCCGAAGTTCTGGAGACCTGGTAATGTAGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCAGCCAAAGCGAGCCGAAGTTCTGGAGACCTGGTAATGTAGTGG  896

seq1  GCGGGGCTCCGAGGTGTTATAAGTGTAGTCAGAGTCAGCCGCTCCAGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCTCCGAGGTGTTATAAGTGTAGTCAGAGTCAGCCGCTCCAGACA  946

seq1  TTAGGCCTAGGGTTTGTCCCTGCTCAGTTACTGATGGAGTTTTGTTCATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTAGGGTTTGTCCCTGCTCAGTTACTGATGGAGTTTTGTTCATC  996

seq1  ACCTTGAGCCCCACTGTTCCTAGGCTTAGCTTTTATACCTGGATTACATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGCCCCACTGTTCCTAGGCTTAGCTTTTATACCTGGATTACATG  1046

seq1  CTGATGGAGAAAGAATATAGAGGTGAAAGCTGTAATACTTGACATATATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGAAAGAATATAGAGGTGAAAGCTGTAATACTTGACATATATA  1096

seq1  TTACAAAACCTGATGCATAGAGAAATGCCAGAATCCATGTAAAAAACACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAACCTGATGCATAGAGAAATGCCAGAATCCATGTAAAAAACACA  1146

seq1  TAGAATTC  1155
      ||||||||
seq2  TAGAATTC  1154

seq1: chr9_66504071_66505154
seq2: B6Ng01-310J02.g_70_1164

seq1  GAATTCTCAGTAGAACTCCTGCAGGAATAAAGTATCCTTTACATCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTAGAACTCCTGCAGGAATAAAGTATCCTTTACATCATGAA  50

seq1  CAGGTGACATAAGTTGTGCCATTCCTGAGGATTGCAACTTTGATGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACATAAGTTGTGCCATTCCTGAGGATTGCAACTTTGATGAAAAG  100

seq1  GCTGTGTCTTCCAGGCTGTGCTATGTTAGCAGGCATGAGCCATTATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCTTCCAGGCTGTGCTATGTTAGCAGGCATGAGCCATTATGCCT  150

seq1  GGCTTATGTGGTCCCAGGTATTGAACCCAGGGCCTTATGCATGCTAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATGTGGTCCCAGGTATTGAACCCAGGGCCTTATGCATGCTAGGAA  200

seq1  AACTCTACCAACTGAGCCATATCTAAGCCCACAGATGGTATTTGCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACCAACTGAGCCATATCTAAGCCCACAGATGGTATTTGCTGAGT  250

seq1  TAAGGCTTGTGGAATGAACCAGGGCTGTAGGGGCTAGGGAAGAGGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTGTGGAATGAACCAGGGCTGTAGGGGCTAGGGAAGAGGTGAGG  300

seq1  CTTAAGCACTAGGGTGAGAGGACCTGGCAGCAGCCATTTCAACACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCACTAGGGTGAGAGGACCTGGCAGCAGCCATTTCAACACTGAAA  350

seq1  ACCCAGTAGATTTACTAGAGGATTCTAAGAATGTCCTCACTGCCAGGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAGATTTACTAGAGGATTCTAAGAATGTCCTCACTGCCAGGACG  400

seq1  CCTTCCCCTCACTCCAACTGTATTAGAATGGGGGAGCGAGGAGATGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTCACTCCAACTGTATTAGAATGGGGGAGCGAGGAGATGAGTT  450

seq1  GTTGATAGCAGGTCTCATATTTTAAACTCCCAGGTGCGTGCAACCAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGCAGGTCTCATATTTTAAACTCCCAGGTGCGTGCAACCAGCTA  500

seq1  ACAAAACTAACTTCTGCTATCTCTTCCTTCTCTTCCTTTGGGGTCAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAACTTCTGCTATCTCTTCCTTCTCTTCCTTTGGGGTCAGGAC  550

seq1  TTCTCAAAAGGTACCTAATGGTGACATTCATTCCTACATCTGGAAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAAGGTACCTAATGGTGACATTCATTCCTACATCTGGAAACAAG  600

seq1  GAGCCAGGAAGATACTTTGAGACAGATGTTCAGACCCCCCCTGTCCGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAAGATACTTTGAGACAGATGTTCAGACCCCCCCTGTCCGCCC  650

seq1  CCCCCCCCATGCTTCCCGTTTCTTGATTGTGTTTAGGTCCAAACTGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCATGCTTCCCGTTTCTTGATTGTGTTTAGGTCCAAACTGTTAA  700

seq1  GTGACATCATGTGAAGGCTAAGATGGTCAAATTATAGCATCATGTCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCATGTGAAGGCTAAGATGGTCAAATTATAGCATCATGTCAGTC  750

seq1  TTCCCTCCCTCCCCATCCCCCTCCCCAAGCACAAAGGAGCATAGTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCTCCCCATCCCCCTCCCCAAGCACAAAGGAGCATAGTTTTAA  800

seq1  AAA-CCCTCCTTAATGATAGTGATGTACTGAAATGTTGTTGAAGCTGCCT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTCCTTAATGATAGTGATGTACTGAAATGTTGTTGAAGCTGCCT  850

seq1  GTT-CAAAACATCAACAATATACTTAAATGTATAATAAGCACATTATGC-  897
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCCAAAACATCAACAATATACTTAAATGTATAATAAGCACATTATGCA  900

seq1  ATTTAACCT--GGGGTTAG-ACAGAGAC-TTGTCATCCTGGGAC-ATGCT  942
      |||||||||  |||||||| |||||||| |||||||||| |||| |||||
seq2  ATTTAACCTTGGGGGTTAGAACAGAGACTTTGTCATCCTTGGACAATGCT  950

seq1  GCACTGTCAGCGAG-AGGCTTCCA--GGAGCCCACGTGGACACTCTCT-G  988
      |||||||||||||| |||||||||  | |||||||||||||||||||| |
seq2  GCACTGTCAGCGAGAAGGCTTCCAAGGAAGCCCACGTGGACACTCTCTGG  1000

seq1  GCAGCCAGGTCCACACT-GGGCTCTTTGGCACGGCCACATTTG-AATAAT  1036
      |||||||||| |||||| |||||||||||||||| |||||||| ||||||
seq2  GCAGCCAGGT-CACACTGGGGCTCTTTGGCACGGGCACATTTGAAATAAT  1049

seq1  CTGGGCATGGCAATGACCATGAATTATGTCTA-GGTTATGTACTTGCTC  1084
      || |||||||| |||||||||||| ||||||| |||||||||| |||||
seq2  CT-GGCATGGC-ATGACCATGAATAATGTCTAGGGTTATGTAC-TGCTC  1095