BAC Information

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BAC

Clone NameB6Ng01-311D24
Chromosome16 (Build37)9 (Build37)
Map Location 55,556,703 - 55,557,28637,242,085 - 37,242,970
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311D24.bB6Ng01-311D24.g
ACCGA103015GA103016
length974885
definitionB6Ng01-311D24.b B6Ng01-311D24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,556,703 - 55,557,286)(37,242,085 - 37,242,970)
sequence
gaattctcaaatacctgtccaaggcctcaagcacattgtcaactactttt
caaatttctagttacactttgagcgttcctaatctccaaattgcccagaa
ctccaaaaccaattgtaaaaaataaaaagtattaaagtctttcaagtatt
ccaaaagaaaaataaataaaacccacccaaatctgaaacactcccaggcc
cctgggatttgcctaagcagtctcctatccctgagcaaatcttagatgaa
actagtcattcatctatcgaaataccaggcacactgtgataagcacatca
ggtacttccctctctctcctcctctccccctctcccctgccctctctctc
tctctctctctctctctctctctctctctctatctctttcgagtatcccg
gggtatgaaaataacttgatataaactgcttacaagaaattactgtcatc
catggatcacagattataaaggatgaaattgtagagaagtctggagatta
aaaactttccattaaaaaacagaaacaaacaacaacaacaaacccagact
gagctgttattaggagagcaaccctgggcatctgggaatggtaagtctct
taaactaatattgaactcccactagactacatgagtaatcttattcttta
aaatttgtcacaccacaagaacacggtccacagaatcaactaaccagggc
acataagagctcacagagaatgaactaacctatataggtctgacctaggt
cctctgcatgtatgttatgggtgtgtagcttggtgttctagtgggactcc
tacagtgggagcaagggctctctctgactcttttgcctgcttttgggaac
ctttttccactgggttgccttgtacagtcttatatgagacctttgtgtct
agtctataacttggtgttgagactgggtgagtcccagaagaagcctgctt
ctttttcagaaggaaatgtaagga
gaattctgggggcatttagtgcttcggagtcctcggtccaggaccagaga
gctcaaggtgggatgaactaaatggtgagggctgatggggctcaacaatc
ccacgggacttagagccctgggagctgacacatctgtgggtgctgaactg
ggtccctggtgcatccaccgaagacaaaacctgggcagatcttgagaatg
gggtaggctagggcactaaagagatagaagttttttacatcagaccctca
tccaggggcttgctgtagtgctagaccactttcagccggagaggtaagga
aggggtgtgtgtgctgaatttgccaatcagaagacatcaccatttgagac
caatcccttcagagttaaggatgaagaggactagttcatctggtctgatc
ctcagaatcttaaggaccgtttgcttggccttctgctggtcggtcttgcg
ggttccatcacattagaaggccaagcaaggcagaaacttaacttcatggc
cctgctttggagctggaaaggctggaaaccccctaaccatgcagattttg
ccctatgctaatcccttgatttgctcccggccggcctctgggcaaacaca
cccccgcctggcgtctaggggcttgtcaccctgttagcggatttgtttct
ggagaccgcacagttaattggccctttatgtggggatcagggagtatttg
ctctgggttccctaagcggaggcggcagcgcagcccgtgggcaccgcttc
ctcctaatccctgtcgtctgggtttggatgctgaacaaatggaggaaagc
cattttttctaggactcttggcccctatctggtccatctgtgatctcacc
tctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55556703_55557286
seq2: B6Ng01-311D24.b_433_1020

seq1  TTTCGATTATCCCGGGGTATGAAAATAACTTGATATAAACTGCTTACAAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGTATCCCGGGGTATGAAAATAACTTGATATAAACTGCTTACAAG  50

seq1  AAATTACTGTCATCCATGGATCACAGATTATAAAGGATGAAATTGTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGTCATCCATGGATCACAGATTATAAAGGATGAAATTGTAGAG  100

seq1  AAGTCTGGAGATTAAAAACTTTCCATTAAAAAACAGAAACAAACAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGAGATTAAAAACTTTCCATTAAAAAACAGAAACAAACAACAAC  150

seq1  AACAAACCCAGACTGAGCTGTTATTAGGAGAGCAACCCTGGGCATCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCCAGACTGAGCTGTTATTAGGAGAGCAACCCTGGGCATCTGGG  200

seq1  AATGGTAAGTCTCTTAAACTAATATTGAACTCCCACTAGACTACATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAGTCTCTTAAACTAATATTGAACTCCCACTAGACTACATGAGT  250

seq1  AATCTTATTCTTTAAAA-TTGTCACACCACAAGAACACGGTCCACAGAAT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCTTATTCTTTAAAATTTGTCACACCACAAGAACACGGTCCACAGAAT  300

seq1  CAACTAACCAGGGCACATAAGAGCTCACAGAGAATGAACTAACCTATATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACCAGGGCACATAAGAGCTCACAGAGAATGAACTAACCTATATA  350

seq1  GGTCTGACCTAGGTCCTCTGCATGTATGTTATGGTTGTGTAGCTTGGTGT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTCTGACCTAGGTCCTCTGCATGTATGTTATGGGTGTGTAGCTTGGTGT  400

seq1  TCTAGTGGGACTCCTAACAGTGGGAGC-AGGGCTCTCTCTGACTCTTTTG  448
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TCTAGTGGGACTCCT-ACAGTGGGAGCAAGGGCTCTCTCTGACTCTTTTG  449

seq1  CCTGCTTTTGGGAACC-TTTTCCACTGGGTTGCCTTGTACAGTCTTAATA  497
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CCTGCTTTTGGGAACCTTTTTCCACTGGGTTGCCTTGTACAGTCTT-ATA  498

seq1  TGAGAGC-TTGTGTCTAGTCTTATAACTT-GTGTTGTGACTGGGTGATAT  545
      ||||| | |||||||||||| |||||||| |||||| ||||||||||  |
seq2  TGAGACCTTTGTGTCTAGTC-TATAACTTGGTGTTGAGACTGGGTGA-GT  546

seq1  CCCAG-AGAGGCCTGC-TCTTTTCCGAAGGGAAATG-AAGGA  584
      ||||| ||| |||||| |||||| |  | ||||||| |||||
seq2  CCCAGAAGAAGCCTGCTTCTTTTTCAGAAGGAAATGTAAGGA  588

seq1: chr9_37242085_37242970
seq2: B6Ng01-311D24.g_67_951

seq1  GAATTCTGGGGGCATTTAGTGCTTCGGAGTCCTCGGTCCAGGACCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGGCATTTAGTGCTTCGGAGTCCTCGGTCCAGGACCAGAGA  50

seq1  GCTCAAGGTGGGATGAACTAAATGGTGAGGGCTGATGGGGCTCAACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGTGGGATGAACTAAATGGTGAGGGCTGATGGGGCTCAACAATC  100

seq1  CCACGGGACTTAGAGCCCTGGGAGCTGACACATCTGTGGGTGCTGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGACTTAGAGCCCTGGGAGCTGACACATCTGTGGGTGCTGAACTG  150

seq1  GGTCCCTGGTGCATCCACCGAAGACAAAACCTGGGCAGATCTTGAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGGTGCATCCACCGAAGACAAAACCTGGGCAGATCTTGAGAATG  200

seq1  GGGTAGGCTAGGGCACTAAAGAGATAGAAGTTTTTTACATCAGACCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGCTAGGGCACTAAAGAGATAGAAGTTTTTTACATCAGACCCTCA  250

seq1  TCCAGGGGCTTGCTGTAGTGCTAGACCACTTTCAGCCGGAGAGGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGCTTGCTGTAGTGCTAGACCACTTTCAGCCGGAGAGGTAAGGA  300

seq1  AGGGGTGTGTGTGCTGAATTTGCCAATCAGAAGACATCACCATTTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGTGTGTGCTGAATTTGCCAATCAGAAGACATCACCATTTGAGAC  350

seq1  CAATCCCTTCAGAGTTAAGGATGAAGAGGACTAGTTCATCTGGTCTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTCAGAGTTAAGGATGAAGAGGACTAGTTCATCTGGTCTGATC  400

seq1  CTCAGAATCTTAAGGACCGTTTGCTTGGCCTTCTGCTGGTCGGTCTTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCTTAAGGACCGTTTGCTTGGCCTTCTGCTGGTCGGTCTTGCG  450

seq1  GGTTCCATCACATTAGAAGGCCAAGCAAGGCAGAAACTTAACTTCATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATCACATTAGAAGGCCAAGCAAGGCAGAAACTTAACTTCATGGC  500

seq1  CCTGCTTTGGAGCTGGAAAGGCTGGAAACCCCCTAACCATGCAGATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGGAGCTGGAAAGGCTGGAAACCCCCTAACCATGCAGATTTTG  550

seq1  CCCTATGCTAATCCCTTGATTTGCTCCCGGCCGGCCTCTGGGCAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGCTAATCCCTTGATTTGCTCCCGGCCGGCCTCTGGGCAAACACA  600

seq1  CCCCCGCCTGGCGTCTAGGGGCTTGTCACCCTGTTAGCGGATTTGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCCTGGCGTCTAGGGGCTTGTCACCCTGTTAGCGGATTTGTTTCT  650

seq1  GGAGACCGCACAGTTAATTGGCCCTTTATGTGGGGATCAGGGAGTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCGCACAGTTAATTGGCCCTTTATGTGGGGATCAGGGAGTATTTG  700

seq1  CTCTGGGTTCCCTAAGCGGAGGCGGCAGCGCAGCCCGTGGGCACCGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTTCCCTAAGCGGAGGCGGCAGCGCAGCCCGTGGGCACCGCTTC  750

seq1  CTCCTAATCCCTGTCGTCTGGGTTTGGATGCTGAACAAATGGAGGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATCCCTGTCGTCTGGGTTTGGATGCTGAACAAATGGAGGAAAGC  800

seq1  CA-TTTTTCTAGGACTCTTGGCCCCTATCTGGTCCATCTTGTGAATCTCA  849
      || ||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CATTTTTTCTAGGACTCTTGGCCCCTATCTGGTCCATC-TGTG-ATCTCA  848

seq1  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  886
      |||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  885