BAC Information

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BAC

Clone NameB6Ng01-311G05
Chromosome9 (Build37)
Map Location 34,155,430 - 34,258,446
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311G05.bB6Ng01-311G05.g
ACCGA103118GA103119
length1,1621,131
definitionB6Ng01-311G05.b B6Ng01-311G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,155,430 - 34,156,613)(34,257,334 - 34,258,446)
sequence
gaattctgagataacaaggattctgtacaatcacagcttggtgataactt
atattttttttatggaaagccataatgtaaatatatacaggaaaggattt
gtcccagggtaaggaagaaattccaaaacatctgcaatctgatatttccc
ctcacttctgccatttcagcgtacaagaaagaaataacaagagactggca
ggtgagacctaagcaaacttcctcccggagtctgcaattcatgggatgac
cttggttctcctaagactgagaagccaaagcaagcagtatgcaaatctgt
ctggctctgggtgtggcacagattctaagaattatttaataattatcata
ttatacatatttataaaataacattaatatattaataatagcaatgtagt
agtggtagaagtagtagtaatagtagtagtagcagcagctgctgctgcta
cagtaatagtaataacagttttgaggcaaggtctagcaatgtaaccttgg
ctagtctgaaacaatgtagaccagactggcctcaaactcagacaaaccca
cctgtctctgccttccaattgctgggattaaaagcatgtgccaccatgcc
ctgctgaattaaattattttaagtgctaaataggagttcaaaaaaagtta
gcatgcagcctaatacatgacaatgtgctaaataagtagtataatcactt
taggaacttaaaggaaggagacacatttacagccaaacatgaacacggag
ttcaaactgcaccctaaaaggtatcagaaattcccaggctcatgcagctg
ttgtccctcctcttgtgtgttcttgggcagggcttgattttgaaattaag
catctcccttgcattgtttaatcttgacaaatggaattcaccacccacca
gttagaaccagctgcagattcttgaccatacaggagtatgtcagcaaagt
cagactgtgggagctgagtgacaaggagccagagacagcgtcctgcagaa
gacagcaaacagccctgctgtaatctattctttggtattgatagtggact
atattagtttggcacttcaattgagactgatttttttaagtgtcggtaag
caatcagagtagcaatggctagacatttttcctcactttgattacatgct
caagtttattat

gaattctcagaccgccccctctctgtatctcctgtgtgtttgtccccatg
gccatgctttataaccatcacacagtctgtaggggggaagactctgcttt
ccctattgtatccttccacatttatttatttattttgatttatttctgaa
acacttaagttgctttgaagaagccaagaaaggcaaaacaagaaaaaaaa
atcaattgaagggaaagggtgattctgcaatttgcaagcagaggaagggc
taagaaagaggaagaaaggcaggtaaaggaggagtagggtgacagcgtga
gtagaggggacttggtgggattggtgagcaggagggaacagcttggctgt
aggctacctcagggtacatttaccaccgcctcctgctgaaccccagtcat
gcatcctctaccatgcttccctgtgtgactttctcagtcctgcccttttc
tgtatctcctgtacatttgttcccatgaggcctgcctgcagcaggtacca
gccttactttctccattatctgaattctaactcctcctggaaactgtgct
taaaggatgttttgctagttttctttacttccatagcatcttccatatgt
ttggtggacaggatggattcatggatgctcttaaagtagaggaaaaatcc
tctacctaataaatcctcatacatatttactgggcgctagtgatgccctc
aaagagtggctcatttactactgtcatcacattcttgtgaagaaggcatt
ctcattaatgccctttcacagaaagatgacttcggtacagaaagaggtca
caaatagcagacagcagagctttgagttaatgcccagagcttggctttgg
ttctcttcgcctcttgcacttcctttcacctgggcaaactagaataacag
agttcttggttttcccaataataagcatcaaaaaagaatgtttttatcgt
gtttctgtaaaatcaatcagcaacctcagcagcattggaacatttcctta
taacaaaccacccctctgtggtggaacaattagcaggacaggagacaaca
gcccagtcaagctgctgattggaacttaagttcattaaattcctctgctc
ttcacctgggccttggctcagactatacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_34155430_34156613
seq2: B6Ng01-311G05.b_46_1207

seq1  GAATTCTGAGATAACAAGGATTCTGTACAATCACAGCTTGGTGATAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATAACAAGGATTCTGTACAATCACAGCTTGGTGATAACTT  50

seq1  ATATTTTTTTTATGGAAAGCCATAATGTAAATATATACAGGAAAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTTATGGAAAGCCATAATGTAAATATATACAGGAAAGGATTT  100

seq1  GTCCCAGGGTAAGGAAGAAATTCCAAAACATCTGCAATCTGATATTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGTAAGGAAGAAATTCCAAAACATCTGCAATCTGATATTTCCC  150

seq1  CTCACTTCTGCCATTTCAGCGTACAAGAAAGAAATAACAAGAGACTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTGCCATTTCAGCGTACAAGAAAGAAATAACAAGAGACTGGCA  200

seq1  GGTGAGACCTAAGCAAACTTCCTCCCGGAGTCTGCAATTCATGGGATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGACCTAAGCAAACTTCCTCCCGGAGTCTGCAATTCATGGGATGAC  250

seq1  CTTGGTTCTCCTAAGACTGAGAAGCCAAAGCAAGCAGTATGCAAATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTCCTAAGACTGAGAAGCCAAAGCAAGCAGTATGCAAATCTGT  300

seq1  CTGGCTCTGGGTGTGGCACAGATTCTAAGAATTATTTAATAATTATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGGGTGTGGCACAGATTCTAAGAATTATTTAATAATTATCATA  350

seq1  TTATACATATTTATAAAATAACATTAATATATTAATAATAGCAATGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATATTTATAAAATAACATTAATATATTAATAATAGCAATGTAGT  400

seq1  AGTGGTAGAAGTAGTAGTAATAGTAGTAGTAGCAGCAGCTGCTGCTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGAAGTAGTAGTAATAGTAGTAGTAGCAGCAGCTGCTGCTGCTA  450

seq1  CAGTAATAGTAATAACAGTTTTGAGGCAAGGTCTAGCAATGTAACCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATAGTAATAACAGTTTTGAGGCAAGGTCTAGCAATGTAACCTTGG  500

seq1  CTAGTCTGAAACAATGTAGACCAGACTGGCCTCAAACTCAGACAAACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGAAACAATGTAGACCAGACTGGCCTCAAACTCAGACAAACCCA  550

seq1  CCTGTCTCTGCCTTCCAATTGCTGGGATTAAAAGCATGTGCCACCATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGCCTTCCAATTGCTGGGATTAAAAGCATGTGCCACCATGCC  600

seq1  CTGCTGAATTAAATTATTTTAAGTGCTAAATAGGAGTTCAAAAAAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATTAAATTATTTTAAGTGCTAAATAGGAGTTCAAAAAAAGTTA  650

seq1  GCATGCAGCCTAATACATGACAATGTGCTAAATAAGTAGTATAATCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGCCTAATACATGACAATGTGCTAAATAAGTAGTATAATCACTT  700

seq1  TAGGAACTTAAAGGAAGGAGACACATTTACAGCCAAACATGAACACGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTTAAAGGAAGGAGACACATTTACAGCCAAACATGAACACGGAG  750

seq1  TTCAAACTGCACCCTAAAAGGTATCAGAAATTCCCAGGCTCATGCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGCACCCTAAAAGGTATCAGAAATTCCCAGGCTCATGCAGCTG  800

seq1  TTGTCCCTCCTCTTGTGTGTTCTTGGGCAGGGCTTGATTTTGAAATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTCCTCTTGTGTGTTCTTGGGCAGGGCTTGATTTTGAAATTAAG  850

seq1  CATCTCCCTTGCATTGTTTAATCTTGACAAATGGAATTCACCACCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTTGCATTGTTTAATCTTGACAAATGGAATTCACCACCCACCA  900

seq1  GTTAGAACCAGCTGCAGATTCTTGACCATACAGGAGTATGTCAGCAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTAGAACCAGCTGCAGATTCTTGACCATACAGGAGTATGTCAGC-AAAG  949

seq1  TTCAAGACTGTGGAAGCTGAGTGACAAGGAGCCAAGAGACAAGCGTCCTG  1000
      |   ||||||||| ||||||||||||||||||| |||||| |||||||| 
seq2  T--CAGACTGTGGGAGCTGAGTGACAAGGAGCC-AGAGAC-AGCGTCCT-  994

seq1  GCAGAAGACAGCAAACAGCCCTGCTGTAAATTCCTATTCTTTTGTA-TGA  1049
      |||||||||||||||||||||||||||||    ||||||||| ||| |||
seq2  GCAGAAGACAGCAAACAGCCCTGCTGTAA---TCTATTCTTTGGTATTGA  1041

seq1  TAGTGACCTATATTAGTTTTGGCCACTTCCATTTGGAGACTGGATTTTTT  1099
      |||||  ||||||||||||  | |||||| |||  |||||||    ||||
seq2  TAGTGGACTATATTAGTTT--GGCACTTCAATT--GAGACTG---ATTTT  1084

seq1  TTTAAGTGTCCTGTAGAGCAAATCCAAGAGTAGCAAAAATGCCCTAAAGA  1149
      ||||||||| | ||| ||| ||||  ||||||||   |||| |    |||
seq2  TTTAAGTGT-CGGTA-AGC-AATC--AGAGTAGC---AATGGC---TAGA  1123

seq1  CATTTTTCCTCAACTAAATTACATGC----ATTTATTTT  1184
      ||||||||||||  |  |||||||||     |||||| |
seq2  CATTTTTCCTCACTTTGATTACATGCTCAAGTTTATTAT  1162


seq1: chr9_34257334_34258446
seq2: B6Ng01-311G05.g_68_1198 (reverse)

seq1  TTTGTATAGTCTGAGCCAAGGCC--AGTGAAGAGACAGAGAAATTTAAAT  48
      |||||||||||||||||||||||   |||||||| ||||| |||||||  
seq2  TTTGTATAGTCTGAGCCAAGGCCCAGGTGAAGAG-CAGAGGAATTTAATG  49

seq1  GACTAAATTTCCAATCAGCCAGCCTGA--TGGCTGTTGTCTCTTGT-CTG  95
       ||| || |||||||||| |||| |||   |||||||||||| ||| |||
seq2  AACTTAAGTTCCAATCAG-CAGCTTGACTGGGCTGTTGTCTCCTGTCCTG  98

seq1  CTAAT--GTCCA-CACAGA-GGGTGGTTTG-TATAAGG-AATGT--CAAT  137
      |||||   |||| |||||| |||||||||| ||||||| |||||  ||||
seq2  CTAATTGTTCCACCACAGAGGGGTGGTTTGTTATAAGGAAATGTTCCAAT  148

seq1  GCTGCTGA-GTTGCTGATGGATTTTACAG-AACACGAT-AAAACATTC-T  183
      |||||||| ||||||||| |||||||||| |||||||| ||||||||| |
seq2  GCTGCTGAGGTTGCTGATTGATTTTACAGAAACACGATAAAAACATTCTT  198

seq1  TTTTGATGCTTAT--ATGGGAAAACCAAGAACTCTGTTATTCTAGTTTGC  231
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTTTGATGCTTATTATTGGGAAAACCAAGAACTCTGTTATTCTAGTTTGC  248

seq1  CCAGGTGAAAGGAAGTGCAAGAGGCGAAGAGAACCAAAGCCAAGCTCTGG  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAAAGGAAGTGCAAGAGGCGAAGAGAACCAAAGCCAAGCTCTGG  298

seq1  GCATTAACTCAAAGCTCTGCTGTCTGCTATTTGTGACCTCTTTCTGTACC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACTCAAAGCTCTGCTGTCTGCTATTTGTGACCTCTTTCTGTACC  348

seq1  GAAGTCATC-TTCTGTGAAAGGGCATTAATGAGAATGCCTTCTTCACAAG  380
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATCTTTCTGTGAAAGGGCATTAATGAGAATGCCTTCTTCACAAG  398

seq1  AATGTGATGACAGTAGTAAATGAGCCACTCTTTGAGGGCATCACTAGCGC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATGACAGTAGTAAATGAGCCACTCTTTGAGGGCATCACTAGCGC  448

seq1  CCAGTAAATATGTATGAGGATTTATTAGGTAGAGGATTTTTCCTCTACTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAATATGTATGAGGATTTATTAGGTAGAGGATTTTTCCTCTACTT  498

seq1  TAAGAGCATCCATGAATCCATCCTGTCCACCAAACATATGGAAGATGCTA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATCCATGAATCCATCCTGTCCACCAAACATATGGAAGATGCTA  548

seq1  TGGAAGTAAAGAAAACTAGCAAAACATCCTTTAAGCACAGTTTCCAGGAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAAAGAAAACTAGCAAAACATCCTTTAAGCACAGTTTCCAGGAG  598

seq1  GAGTTAGAATTCAGATAATGGAGAAAGTAAGGCTGGTACCTGCTGCAGGC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAATTCAGATAATGGAGAAAGTAAGGCTGGTACCTGCTGCAGGC  648

seq1  AGGCCTCATGGGAACAAATGTACAGGAGATACAGAAAAGGGCAGGACTGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCATGGGAACAAATGTACAGGAGATACAGAAAAGGGCAGGACTGA  698

seq1  GAAAGTCACACAGGGAAGCATGGTAGAGGATGCATGACTGGGGTTCAGCA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCACACAGGGAAGCATGGTAGAGGATGCATGACTGGGGTTCAGCA  748

seq1  GGAGGCGGTGGTAAATGTACCCTGAGGTAGCCTACAGCCAAGCTGTTCCC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGTGGTAAATGTACCCTGAGGTAGCCTACAGCCAAGCTGTTCCC  798

seq1  TCCTGCTCACCAATCCCACCAAGTCCCCTCTACTCACGCTGTCACCCTAC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCACCAATCCCACCAAGTCCCCTCTACTCACGCTGTCACCCTAC  848

seq1  TCCTCCTTTACCTGCCTTTCTTCCTCTTTCTTAGCCCTTCCTCTGCTTGC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTACCTGCCTTTCTTCCTCTTTCTTAGCCCTTCCTCTGCTTGC  898

seq1  AAATTGCAGAATCACCCTTTCCCTTCAATTGATTTTTTTTTCTTGTTTTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAGAATCACCCTTTCCCTTCAATTGATTTTTTTTTCTTGTTTTG  948

seq1  CCTTTCTTGGCTTCTTCAAAGCAACTTAAGTGTTTCAGAAATAAATCAAA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGGCTTCTTCAAAGCAACTTAAGTGTTTCAGAAATAAATCAAA  998

seq1  ATAAATAAATAAATGTGGAAGGATACAATAGGGAAAGCAGAGTCTTCCCC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATGTGGAAGGATACAATAGGGAAAGCAGAGTCTTCCCC  1048

seq1  CCTACAGACTGTGTGATGGTTATAAAGCATGGCCATGGGGACAAACACAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGACTGTGTGATGGTTATAAAGCATGGCCATGGGGACAAACACAC  1098

seq1  AGGAGATACAGAGAGGGGGCGGTCTGAGAATTC  1113
      |||||||||||||||||||||||||||||||||
seq2  AGGAGATACAGAGAGGGGGCGGTCTGAGAATTC  1131


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