BAC Information

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BAC

Clone NameB6Ng01-311L04
Chromosome9 (Build37)
Map Location 50,040,371 - 50,041,353
singlet/doubletsinglet
Overlap genenone
Upstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806
Downstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L04.bB6Ng01-311L04.g
ACCGA103352GA103353
length549985
definitionB6Ng01-311L04.b B6Ng01-311L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgttcagttctgaaactcaagaagaatgaagactgaagtgtggacact
atgcccctccttagaagtgggaacaaaacacccatggaaggagttacaga
gacaaagtttggagctgagacgaaaggatggaccatgtagagactgccac
atccagggatccaccccataatcagctttcaaacgctgacaccattgcat
acactagcaagattttatcgaaagaacccagatgtagctgtctcttgtga
gactatgccggggcctagcaaacacagaagtggatgctcacagtcagcta
atggatggatcacagggctcccaatggaggagctagagaaagtacccaaa
gagctaaagggatctgcaaccctataggtggaacaacattatgaactaac
cagtaccccggagctcttgactctagctgcatatgtatcaaaagatggcc
tagccggccatcactggaaagagaggcccattggacacacaaactgtata
tgccccagtacaggggaacgccagggccaaaaaaaaatgggaatgagtg
gaattcaaacctcaggtgtggggaccaccagatcctggagaggttgctta
gcaacagggccttgaggctaggctttggttcaaatgccagttctgctgcc
tatggactaagcatgggtggagacgtgtgcatcctctttaactcaactct
ctcaactgtaaaacacaggtaataacagctcctatttcctggagttctca
tgaggattacttggataatttatgtaaagcctctgtacaatgcctgacac
accacatggtattcaataaatgtcagctttatttttggaaacctgtatta
ggtatccagcaggccagactccaagcaagcaaggatctatatgaatgagc
cacatcttacttggaacaccaggcagaaagtggttttaaaagagatgaca
ttaacgaattaagacctacattcagactccctcaactgtcttcgaggcaa
ctcactcctcagactccttcgaggcaaacgattagtggccagcatttttc
ttcagacattagagaagatgtattctggataccttgttagttgagcctca
gaatccagagatgaaggggccagggcatcaactgttcctggagatacaga
taagaaaaacatcagtcactgtcccttccaagtcctggcagacccgacaa
cccccacagctctacaaggaactagcattccccactgagccttgtctctg
aagacttcacttcctccataatgtccctctgaggacacaattccagcatt
aaatctcttcagcaccatccctgtatgctggcttcttgcctgcaggtcca
ggcgagacaagagtggtcctggtccctccagggtctctccgaggctgaac
aggatggtgagtgttgatggctcaaaagaaacacaccaagccaggagtct
tgtcaagcaagtactcaacttttatagcatcagcctctcgcttatataag
ttctgacatagggaggggagatttttggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50040371_50041353
seq2: B6Ng01-311L04.g_64_1048

seq1  GAATTCAAACCTCAGGTGTGGGGACCACCAGATCCTGGAGAGGTTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTCAGGTGTGGGGACCACCAGATCCTGGAGAGGTTGCTTA  50

seq1  GCAACAGGGCCTTGAGGCTAGGCTTTGGTTCAAATGCCAGTTCTGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGGCCTTGAGGCTAGGCTTTGGTTCAAATGCCAGTTCTGCTGCC  100

seq1  TATGGACTAAGCATGGGTGGAGACGTGTGCATCCTCTTTAACTCAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTAAGCATGGGTGGAGACGTGTGCATCCTCTTTAACTCAACTCT  150

seq1  CTCAACTGTAAAACACAGGTAATAACAGCTCCTATTTCCTGGAGTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGTAAAACACAGGTAATAACAGCTCCTATTTCCTGGAGTTCTCA  200

seq1  TGAGGATTACTTGGATAATTTATGTAAAGCCTCTGTACAATGCCTGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTACTTGGATAATTTATGTAAAGCCTCTGTACAATGCCTGACAC  250

seq1  ACCACATGGTATTCAATAAATGTCAGCTTTATTTTTGGAAACCTGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTATTCAATAAATGTCAGCTTTATTTTTGGAAACCTGTATTA  300

seq1  GGTATCCAGCAGGCCAGACTCCAAGCAAGCAAGGATCTATATGAATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCAGCAGGCCAGACTCCAAGCAAGCAAGGATCTATATGAATGAGC  350

seq1  CACATCTTACTTGGAACACCAGGCAGAAAGTGGTTTTAAAAGAGATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTACTTGGAACACCAGGCAGAAAGTGGTTTTAAAAGAGATGACA  400

seq1  TTAACGAATTAAGACCTACATTCAGACTCCCTCAACTGTCTTCGAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGAATTAAGACCTACATTCAGACTCCCTCAACTGTCTTCGAGGCAA  450

seq1  CTCACTCCTCAGACTCCTTCGAGGCAAACGATTAGTGGCCAGCATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCTCAGACTCCTTCGAGGCAAACGATTAGTGGCCAGCATTTTTC  500

seq1  TTCAGACATTAGAGAAGATGTATTCTGGATACCTTGTTAGTTGAGCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACATTAGAGAAGATGTATTCTGGATACCTTGTTAGTTGAGCCTCA  550

seq1  GAATCCAGAGATGAAGGGGCCAGGGCATCAACTGTTCCTGGAGATACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGAGATGAAGGGGCCAGGGCATCAACTGTTCCTGGAGATACAGA  600

seq1  TAAGAAAAACATCAGTCACTGTCCCTTCCAAGTCCTGGCAGACCCGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAACATCAGTCACTGTCCCTTCCAAGTCCTGGCAGACCCGACAA  650

seq1  CCCCCACAGCTCTACAAGGAACTAGCATTCCCCACTGAGCCTTGTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGCTCTACAAGGAACTAGCATTCCCCACTGAGCCTTGTCTCTG  700

seq1  AAGACTTCACTTCCTCCATAATGTCCCTCTGAGGACACAATTCCAGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCACTTCCTCCATAATGTCCCTCTGAGGACACAATTCCAGCATT  750

seq1  AAATCTCTTCAGCACCATCCCTGTATGCTGGCTTCTTGCCTGCAGGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTCAGCACCATCCCTGTATGCTGGCTTCTTGCCTGCAGGTCCA  800

seq1  GGCGAGACAAGAGTGGTCCTGGTCCCTCCAGGGTCTCTCCGAGGCTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGACAAGAGTGGTCCTGGTCCCTCCAGGGTCTCTCCGAGGCTGAAC  850

seq1  AGGATGGTGAGTGTTGATGGCTCAAAAGAAACACACCAAGCCAGGAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGAGTGTTGATGGCTCAAAAGAAACACACCAAGCCAGGAGTCT  900

seq1  TGTCAAAGCAGGTACTCAAC-TTTATAGCATCAGCCTCTCGCTTATATAA  949
      |||| ||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TGTC-AAGCAAGTACTCAACTTTTATAGCATCAGCCTCTCGCTTATATAA  949

seq1  GTTCTGAACATAGGGA-GGGAGATTTT--GGGTGGGG  983
      |||||| ||||||||| ||||||||||  ||||||||
seq2  GTTCTG-ACATAGGGAGGGGAGATTTTTGGGGTGGGG  985