BAC Information

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BAC

Clone NameB6Ng01-311L05
Chromosome9 (Build37)
Map Location 85,911,868 - 86,027,232
singlet/doubletdoublet
Overlap genenone
Upstream geneBC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
Downstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L05.bB6Ng01-311L05.g
ACCGA103354GA103355
length1,0161,006
definitionB6Ng01-311L05.b B6Ng01-311L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,026,306 - 86,027,232)(85,911,868 - 85,912,855)
sequence
gaattcatgttgattcaaaagtccctttgatgatccccatctctttattt
atgtaccacatgtatggctaatgttcttggaaaccagaaagaggtactgg
atgccctgaaactggaggtacagatgtttaagacactgtgtgggcattgt
aacccaaattagtatcctctacaaatgaagccagtgatcttaaaacactg
agccatctctccactccacctaacttttattttttgaatattgttaaatg
tacagaaaaatttcaaagatactactgtacaacttctcctatatcagcaa
cagaacattgtcactagtatagaaccagtattataaccagttgaactgct
cactgtttaacattaaatctctttccttcctgggcttccccttgcaggag
cccatcagatcaagggcacactgtatttattcccaaggctctttaggtgt
tctcagctgtgtccttcagcatccatgttgatgcctcaggatttttcttg
tttatggcgacattcatcatttcaaagagtgctgcttttacagtttgtag
aaatctctcagtttggttttgcccgaatgttttcttctcacaatcagtgt
ggcgttgatgaggttttagaagtagaacagaagaaaaatccccttctctt
tgtatagggaggagatattgtcaatatgcttcatgaatgatagcgttaac
cttgtttgtgaagtttacttctggaagtctggacctgtctccgcacttga
aagcaagtcagcaagaagaggtcatgtggaggaggtggccagttaaatac
tgctttctggagagagcaatgcatgcagttgttttacagaacacttgttt
cttctcccatttatctgttcacttgtttacataattgcctgcttacagat
atatgtactctatatttagggttgcaatctactgttccattatttatttt
gttgctcaaataattttagttctggcctttggaaaagaatttcatgttga
ttcaaaagtcctttga
gaattctcatgggacaggagatctgagctgagacttgaaggagccaggta
tggattgatctgacaaaagttcagtcaaggaagcagcaatcacaaaatcc
ctcaggcagaaatgaacagctagtgcccaaggaagtgagactggtggctg
ggcagagagctcacacgggggacggctggagtggaggtgaaacggcagat
ggggagcttcattacagcaaggttgttctacaaccagtgacagactgtca
gaacatggaagctgtgatccgagtaatgactaaaagattcttctggctgc
tgcctggagaccagcagaaggactcgaatggaagcagaaggggtttttaa
agcctactgctgtagataagattgtacttgcgtgggggcattggtggtgc
agagaaggggcaaatccgatgtagaaaagtcaacaggagcaatagctccc
atgagtgtgtgggatggtgggaagatgctctaagtgtagaaagctggggt
accgcagcttgacactgcctcagtagtagtgtaaaggaaatagggaagaa
tgagtgaggctcttgaatgacccagggaaggaagatggggtaagagaaag
aaagtgaaagtcttttctggtcattgaggagagtgtgctagaataatcgc
cagctggattacctttggtaatttagttaacagtttttggttttttgttt
ttttcagtgtctcaatttcatcaggaaaacaggagatgcaaggcctgaat
tacagagggcatggtgggtgtgggcatgaattcaaagtatggcccactca
ctgaagcaccggggcacagttacaggcatggcgctcaggaaattgaaggt
tttcatttatcatcaacccccctgtccctttccaatctcccagaacctca
gcactcttgttttgaaaatagagccgaggaaaagattggaacaattaagg
tccatttccaaactggaaacctttgataaccaccatcacctttgcctttg
tactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86026306_86027232
seq2: B6Ng01-311L05.b_44_970 (reverse)

seq1  TTGCAACCCTAAATATAGAGTACATATATCTGTAAGCAGGCAATTATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCCTAAATATAGAGTACATATATCTGTAAGCAGGCAATTATGTA  50

seq1  AACAAGTGAACAGATAAATGGGAGAAGAAACAAGTGTTCTGTAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGAACAGATAAATGGGAGAAGAAACAAGTGTTCTGTAAAACAAC  100

seq1  TGCATGCATTGCTCTCTCCAGAAAGCAGTATTTAACTGGCCACCTCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATTGCTCTCTCCAGAAAGCAGTATTTAACTGGCCACCTCCTCC  150

seq1  ACATGACCTCTTCTTGCTGACTTGCTTTCAAGTGCGGAGACAGGTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCTCTTCTTGCTGACTTGCTTTCAAGTGCGGAGACAGGTCCAGA  200

seq1  CTTCCAGAAGTAAACTTCACAAACAAGGTTAACGCTATCATTCATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAGTAAACTTCACAAACAAGGTTAACGCTATCATTCATGAAGC  250

seq1  ATATTGACAATATCTCCTCCCTATACAAAGAGAAGGGGATTTTTCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACAATATCTCCTCCCTATACAAAGAGAAGGGGATTTTTCTTCTG  300

seq1  TTCTACTTCTAAAACCTCATCAACGCCACACTGATTGTGAGAAGAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCTAAAACCTCATCAACGCCACACTGATTGTGAGAAGAAAACA  350

seq1  TTCGGGCAAAACCAAACTGAGAGATTTCTACAAACTGTAAAAGCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGCAAAACCAAACTGAGAGATTTCTACAAACTGTAAAAGCAGCACT  400

seq1  CTTTGAAATGATGAATGTCGCCATAAACAAGAAAAATCCTGAGGCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATGATGAATGTCGCCATAAACAAGAAAAATCCTGAGGCATCAA  450

seq1  CATGGATGCTGAAGGACACAGCTGAGAACACCTAAAGAGCCTTGGGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGCTGAAGGACACAGCTGAGAACACCTAAAGAGCCTTGGGAATA  500

seq1  AATACAGTGTGCCCTTGATCTGATGGGCTCCTGCAAGGGGAAGCCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTGTGCCCTTGATCTGATGGGCTCCTGCAAGGGGAAGCCCAGGA  550

seq1  AGGAAAGAGATTTAATGTTAAACAGTGAGCAGTTCAACTGGTTATAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGATTTAATGTTAAACAGTGAGCAGTTCAACTGGTTATAATAC  600

seq1  TGGTTCTATACTAGTGACAATGTTCTGTTGCTGATATAGGAGAAGTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTATACTAGTGACAATGTTCTGTTGCTGATATAGGAGAAGTTGTA  650

seq1  CAGTAGTATCTTTGAAATTTTTCTGTACATTTAACAATATTCAAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTATCTTTGAAATTTTTCTGTACATTTAACAATATTCAAAAAATA  700

seq1  AAAGTTAGGTGGAGTGGAGAGATGGCTCAGTGTTTTAAGATCACTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGGTGGAGTGGAGAGATGGCTCAGTGTTTTAAGATCACTGGCTT  750

seq1  CATTTGTAGAGGATACTAATTTGGGTTACAATGCCCACACAGTGTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGAGGATACTAATTTGGGTTACAATGCCCACACAGTGTCTTAA  800

seq1  ACATCTGTACCTCCAGTTTCAGGGCATCCAGTACCTCTTTCTGGTTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTACCTCCAGTTTCAGGGCATCCAGTACCTCTTTCTGGTTTCCA  850

seq1  AGAACATTAGCCATACATGTGGTACATAAATAAAGAGATGGGGATCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTAGCCATACATGTGGTACATAAATAAAGAGATGGGGATCATCA  900

seq1  AAGGGACTTTTGAATCAACATGAATTC  927
      |||||||||||||||||||||||||||
seq2  AAGGGACTTTTGAATCAACATGAATTC  927

seq1: chr9_85911868_85912855
seq2: B6Ng01-311L05.g_67_1072

seq1  GAATTCTCATGGGACAGGAGATCTGAGCTGAGACTTGAAGGAGCCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGGACAGGAGATCTGAGCTGAGACTTGAAGGAGCCAGGTA  50

seq1  TGGATTGATCTGACAAAAGTTCAGTCAAGGAAGCAGCAATCACAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGATCTGACAAAAGTTCAGTCAAGGAAGCAGCAATCACAAAATCC  100

seq1  CTCAGGCAGAAATGAACAGCTAGTGCCCAAGGAAGTGAGACTGGTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAGAAATGAACAGCTAGTGCCCAAGGAAGTGAGACTGGTGGCTG  150

seq1  GGCAGAGAGCTCACACGGGGGACGGCTGGAGTGGAGGTGAAACGGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGCTCACACGGGGGACGGCTGGAGTGGAGGTGAAACGGCAGAT  200

seq1  GGGGAGCTTCATTACAGCAAGGTTGTTCTACAACCAGTGACAGACTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTTCATTACAGCAAGGTTGTTCTACAACCAGTGACAGACTGTCA  250

seq1  GAACATGGAAGCTGTGATCCGAGTAATGACTAAAAGATTCTTCTGGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGAAGCTGTGATCCGAGTAATGACTAAAAGATTCTTCTGGCTGC  300

seq1  TGCCTGGAGACCAGCAGAAGGACTCGAATGGAAGCAGAAGGGGTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAGACCAGCAGAAGGACTCGAATGGAAGCAGAAGGGGTTTTTAA  350

seq1  AGCCTACTGCTGTAGATAAGATTGTACTTGCGTGGGGGCATTGGTGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTGCTGTAGATAAGATTGTACTTGCGTGGGGGCATTGGTGGTGC  400

seq1  AGAGAAGGGGCAAATCCGATGTAGAAAAGTCAACAGGAGCAATAGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGCAAATCCGATGTAGAAAAGTCAACAGGAGCAATAGCTCCC  450

seq1  ATGAGTGTGTGGGATGGTGGGAAGATGCTCTAAGTGTAGAAAGCTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTGTGGGATGGTGGGAAGATGCTCTAAGTGTAGAAAGCTGGGGT  500

seq1  ACCGCAGCTTGACACTGCCTCAGTAGTAGTGTAAAGGAAATAGGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGCTTGACACTGCCTCAGTAGTAGTGTAAAGGAAATAGGGAAGAA  550

seq1  TGAGTGAGGCTCTTGAATGACCCAGGGAAGGAAGATGGGGTAAGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGCTCTTGAATGACCCAGGGAAGGAAGATGGGGTAAGAGAAAG  600

seq1  AAAGTGAAAGTCTTTTCTGGTCATTGAGGAGAGTGTGCTAGAATAATCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAAGTCTTTTCTGGTCATTGAGGAGAGTGTGCTAGAATAATCGC  650

seq1  CAGCTGGATTACCTTTGGTAATTTAGTTAACAGTTTTTGGTTTTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATTACCTTTGGTAATTTAGTTAACAGTTTTTGGTTTTTTGTTT  700

seq1  TTTTCAGTGTCTCAATTTCATCAGGAAAACAGGAGATGCAAGGCCTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTCTCAATTTCATCAGGAAAACAGGAGATGCAAGGCCTGAAT  750

seq1  TACAGA-GGCATGGTGGGTGT-GGCATGAATTCAAAGTATGGCCCACTCA  798
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TACAGAGGGCATGGTGGGTGTGGGCATGAATTCAAAGTATGGCCCACTCA  800

seq1  CTGAAGCACC-GGGCACAGTTACA-GCATGGCGCTCAGGAAATTGAA-GT  845
      |||||||||| ||||||||||||| |||||||||||||||||||||| ||
seq2  CTGAAGCACCGGGGCACAGTTACAGGCATGGCGCTCAGGAAATTGAAGGT  850

seq1  TTTCA-TTATCATCAA-CCCCCTGTCCC-TTCCAATCTCCCAGAACCTCA  892
      ||||| |||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTTCATTTATCATCAACCCCCCTGTCCCTTTCCAATCTCCCAGAACCTCA  900

seq1  GCACTCTTGTTTTGAAAATAGAGCCGAGGAAAAGATTGG-ACAATTAAGG  941
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCACTCTTGTTTTGAAAATAGAGCCGAGGAAAAGATTGGAACAATTAAGG  950

seq1  T-CATTTCC-AACTGG-AACCTTTGATA--CA-CATCAC--TTG-CTTTG  982
      | ||||||| |||||| |||||||||||  || ||||||  ||| |||||
seq2  TCCATTTCCAAACTGGAAACCTTTGATAACCACCATCACCTTTGCCTTTG  1000

seq1  TACTTA  988
      ||||||
seq2  TACTTA  1006