BAC Information

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BAC

Clone NameB6Ng01-311M18
Chromosome9 (Build37)
Map Location 20,365,529 - 20,486,470
singlet/doubletdoublet
Overlap gene2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Upstream geneOlfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311M18.bB6Ng01-311M18.g
ACCGA103427GA103428
length700729
definitionB6Ng01-311M18.b B6Ng01-311M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,365,529 - 20,366,228)(20,485,742 - 20,486,470)
sequence
gaattctctacatgcacagtgagtactaaccacaaagccagttatctccc
aagtttataactattgattttctttatctttgtttagtttttgagacagg
gtgttcccgtgtaaccccagctgtccttgaactcactctgcagaccccat
ggccttgaacttagaggccctcctgtctctgcatctagagaactgggatg
aaggtcatgtgccatcattcccagctatgttcagccaggcttaattaaaa
agaaatctgccgggacatgtggctcacacttgtgatcttagcgctcagga
agaagaggcaaactgatcactatgagttagttagaggctgaccattcagg
gcagcaaagactcaagaagaaaagaaaggaaagcaaaagaaaagaactcc
aaatcaattctatcatttgaaaatatttaggggctggagagatggctcag
tgattaagagcactgactgctcttccagaggtcctgtgttcaatttacag
aaaccacatggtggctcacaaccatctgtaatgggatctgatgccctttc
ctggtgtgtctgaagacagctacagtatacccacatacatgaaataaatt
aaaatgtcttaaagaaaggaaggaaggaaggaaggaagaaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaaggacgggagagagggaggg

gaattcttgaaaggagctctatcattgccctgtgtgtctcaggcttaatt
aaccctgagtctattatggagccctgtgcttaattgggacagcagcttcc
atgaaagtatttgaaaactccagctcacaaaatgtgatttgaagaagagg
tacttgagggcatagcttatcctcttagagcccattagtggacatattaa
gatgggaaccagaactcaggaaaaaagagtgcctgggaggctcgagagat
gaccctcttttacagaggacctgagttcagttctcagcgcccatgagagg
tagctcacaagtacatgtaactaaagctccagggctcaaacgccctcttt
tggcttcaaagggcactgcactcatgtgcatataccactctcccccaccc
cgccccaattaaaataaagtatttgaaaagcacatccctgccttttgata
agattatggggtggctcaggaggtgccttggttggaattatattggataa
ggtagaaccagaagccactggttgcacgagaggtttagggactcatgctt
tcctgtaaatgcgttttctggtgagattcctagaagctgaaggattggac
ctgctgatggtgtgggacccctaactctgccagacagaggcttcaactgg
gtgaggggcccctccctcttctcatgtgcccaagattttcctctctctct
ctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20365529_20366228
seq2: B6Ng01-311M18.b_47_746

seq1  GAATTCTCTACATGCACAGTGAGTACTAACCACAAAGCCAGTTATCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACATGCACAGTGAGTACTAACCACAAAGCCAGTTATCTCCC  50

seq1  AAGTTTATAACTATTGATTTTCTTTATCTTTGTTTAGTTTTTGAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAACTATTGATTTTCTTTATCTTTGTTTAGTTTTTGAGACAGG  100

seq1  GTGTTCCCGTGTAACCCCAGCTGTCCTTGAACTCACTCTGCAGACCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCGTGTAACCCCAGCTGTCCTTGAACTCACTCTGCAGACCCCAT  150

seq1  GGCCTTGAACTTAGAGGCCCTCCTGTCTCTGCATCTAGAGAACTGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTTAGAGGCCCTCCTGTCTCTGCATCTAGAGAACTGGGATG  200

seq1  AAGGTCATGTGCCATCATTCCCAGCTATGTTCAGCCAGGCTTAATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGTGCCATCATTCCCAGCTATGTTCAGCCAGGCTTAATTAAAA  250

seq1  AGAAATCTGCCGGGACATGTGGCTCACACTTGTGATCTTAGCGCTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCCGGGACATGTGGCTCACACTTGTGATCTTAGCGCTCAGGA  300

seq1  AGAAGAGGCAAACTGATCACTATGAGTTAGTTAGAGGCTGACCATTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGCAAACTGATCACTATGAGTTAGTTAGAGGCTGACCATTCAGG  350

seq1  GCAGCAAAGACTCAAGAAGAAAAGAAAGGAAAGCAAAAGAAAAGAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAGACTCAAGAAGAAAAGAAAGGAAAGCAAAAGAAAAGAACTCC  400

seq1  AAATCAATTCTATCATTTGAAAATATTTAGGGGCTGGAGAGATGGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTCTATCATTTGAAAATATTTAGGGGCTGGAGAGATGGCTCAG  450

seq1  TGATTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGTGTTCAATTTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGTGTTCAATTTACAG  500

seq1  AAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTTTC  550

seq1  CTGGTGTGTCTGAAGACAGCTACAGTATACCCACATACATGAAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGACAGCTACAGTATACCCACATACATGAAATAAATT  600

seq1  AAAATGTCTTAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTTAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  650

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACGGGAGAGAGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACGGGAGAGAGGGAGGG  700

seq1: chr9_20485742_20486470
seq2: B6Ng01-311M18.g_70_798 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAATCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAATCTTGG  50

seq1  GCACATGAGAAGAGGGAGGGGCCCCTCACCCAGTTGAAGCCTCTGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGAAGAGGGAGGGGCCCCTCACCCAGTTGAAGCCTCTGTCTGG  100

seq1  CAGAGTTAGGGGTCCCACACCATCACCAGTTCCAATCCTTCAGCTTCTAG  150
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  CAGAGTTAGGGGTCCCACACCATCAGCAGGTCCAATCCTTCAGCTTCTAG  150

seq1  GAATCTCACCAGAAAACGCATTTACAGGAAAGCATGAGTCCCTAAACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACCAGAAAACGCATTTACAGGAAAGCATGAGTCCCTAAACCTC  200

seq1  TCGTGCAACCAGTGGCTTCTGGTTCTACCTTATCCAATATAATTCCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCAACCAGTGGCTTCTGGTTCTACCTTATCCAATATAATTCCAACC  250

seq1  AAGGCACCTCCTGAGCCACCCCATAATCTTATCAAAAGGCAGGGATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCTCCTGAGCCACCCCATAATCTTATCAAAAGGCAGGGATGTGC  300

seq1  TTTTCAAATACTTTATTTTAATTGGGGCGGGGTGGGGGAGAGTGGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATACTTTATTTTAATTGGGGCGGGGTGGGGGAGAGTGGTATAT  350

seq1  GCACATGAGTGCAGTGCCCTTTGAAGCCAAAAGAGGGCGTTTGAGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGTGCAGTGCCCTTTGAAGCCAAAAGAGGGCGTTTGAGCCCTG  400

seq1  GAGCTTTAGTTACATGTACTTGTGAGCTACCTCTCATGGGCGCTGAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAGTTACATGTACTTGTGAGCTACCTCTCATGGGCGCTGAGAAC  450

seq1  TGAACTCAGGTCCTCTGTAAAAGAGGGTCATCTCTCGAGCCTCCCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGTCCTCTGTAAAAGAGGGTCATCTCTCGAGCCTCCCAGGCA  500

seq1  CTCTTTTTTCCTGAGTTCTGGTTCCCATCTTAATATGTCCACTAATGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTCCTGAGTTCTGGTTCCCATCTTAATATGTCCACTAATGGGC  550

seq1  TCTAAGAGGATAAGCTATGCCCTCAAGTACCTCTTCTTCAAATCACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGGATAAGCTATGCCCTCAAGTACCTCTTCTTCAAATCACATTT  600

seq1  TGTGAGCTGGAGTTTTCAAATACTTTCATGGAAGCTGCTGTCCCAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGGAGTTTTCAAATACTTTCATGGAAGCTGCTGTCCCAATTAA  650

seq1  GCACAGGGCTCCATAATAGACTCAGGGTTAATTAAGCCTGAGACACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGCTCCATAATAGACTCAGGGTTAATTAAGCCTGAGACACACAG  700

seq1  GGCAATGATAGAGCTCCTTTCAAGAATTC  729
      |||||||||||||||||||||||||||||
seq2  GGCAATGATAGAGCTCCTTTCAAGAATTC  729