BAC Information

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BAC

Clone NameB6Ng01-311O03
Chromosome9 (Build37)
Map Location 4,935,028 - 4,936,153
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
Downstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O03.bB6Ng01-311O03.g
ACCGA103491GA103492
length1,1041,127
definitionB6Ng01-311O03.b B6Ng01-311O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttggtattttgttaggataataaaagtactgacttttttttc
ttttttttttttcttttttcttatttagtaaatcctaacacaattgttct
caaccttcccaatgctgcaagagttcaataatgttcttagggttatcatg
atgcctccaaccattaaattattttcttgctatttcataaatgtaagttt
gacactgttaggaattgtaatgtaaatatctgatatgtgggaggatatct
tgaactactgatctaaagataacctaaagagcaggagatttttatggtgg
acttattagaaaatgcatcatgttttccccctattccaactcattattgt
gtaagcatcatactttttgtaaagttaactaactaaaaggtagaagtaaa
atttcagcagaaaaatactcttaaattattctagtggaagtagaggtaaa
tcagtaaatcactcagacaaacacagcacttaagtcttaacacaattttc
tagaacattgtataaaatctatgactaattagtggattctagacccactg
aagtcacaaaaaaaagaagaaaaaaggaaaaaaaagaaaagaaagacaga
aaaaaagataattcatctactccactatttaagctctaaccagattggca
aatatgtttacattggcaaaagatcatgaagttcaaatacgaaatgctac
ctttacaaatttgacatatgtctgcagcatgagcaacttaacatgaagca
attaaccaggttttatttctattgttttttataattgatatttctcactt
tcttataaaatggagaagaaagcatcatgtgtgaaggtaacacactaaca
gctctcatagtaattgccatgaacatggtaggtacttatgtatttatcaa
gccagaattcatcagcacagatttatcattgagcagagcaaagaaacaca
tcacaagcatgtagatcaaatgtaaaggcagaaacaatggtaaacttgaa
aagaatagaatattctaggcagatagcaaagttattagtaatccgagatt
gtaagtagagcactacgaactctttccataagaatgtggaacttgttagc
tctg
gaattctctggttagctctgtacccattttaattggattatttggattgt
tggtatataacttcttgaattctttatatattttgcatattagccctctg
tcaaatgtagatttctttttaaaaaaaaatctatagtcagttgtttgtcc
taatgacagtgtcttttcacttacagaagcatttcagtttcacaaggtcc
ccttaattaaattttgatcctagtgcctgagcaattgttgttctgttcag
gaagttttctcctgtaccaacagtttcaaggctattctctactttctgtt
ttattagatttagcgtatcttgttttacattaggctctttgatccatttg
aacttgagttttgtgcagggtgataattaatgatctattttcattcttgt
aaatgcagatatccagttagactagaatcatatgctgaagaaactttctt
ttttccattatatggttttggattctttgtcaaaaatcaagtgtatataa
gtgtgtgggtctatttcagggtcttctatttgattccattgatccatcca
tttgtttctataccaagaccatgaagtttttattagtattactctgtaat
acaggttgaagtcaggaatctcaatacctgcagaagttcttttatttttc
agacatgttttagctttcctggggttttgtttttctatatgaagttgagc
gttgttctttggaaatctgtgaagaattgttttggaattttgatggtaaa
tgcattgaatctgtagattgcttttggtaagatggccattttctttatgt
tagttttactgatctgtgagcaaaggagatctttcaatattctgatgtat
tcctcaatttctttcttcataggtttgaagttcttgtcatacaggttttt
catgtgtttgggttggcgttataccaaggtattttatataatttgtggct
attatgaagggtattctctctctctcactgttatgttgtgtagagtgcac
tgctgatttttctattttttttggaatttgatcagcacttggctgcagga
tttatgaggtataagagttctctgtagattggtcatatgaatcatcatta
tctggatagcaggatactggacatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4935028_4936153
seq2: B6Ng01-311O03.b_46_1149 (reverse)

seq1  CAGAGCTAAACAAAGTCTCACCACTTTCTTATGGAAAGATGTCCCTGTTG  50
      |||||||||   ||||    |||| ||||||||||||||  ||   || |
seq2  CAGAGCTAA--CAAGT---TCCACATTCTTATGGAAAGAGTTC---GTAG  42

seq1  TTTCTCTACTTAACATCTCTGATTACTTATTACTTTGCTATCTTGCTTTA  100
       | |||||||||  ||||| ||||||| || ||||||||||| ||| |  
seq2  -TGCTCTACTTACAATCTCGGATTACTAATAACTTTGCTATC-TGCCTAG  90

seq1  GATATTCTAATTTCTTTTCAAAGTTTACCATTTGTTTCTGGCTTTTACAT  150
       ||||||||  |||||||| |||||||||| |||||||| || |||||||
seq2  AATATTCTA--TTCTTTTC-AAGTTTACCA-TTGTTTCT-GCCTTTACAT  135

seq1  TTGATTCTACCATGCTTTGTTGATGTGTTTCTTTGCTTCTGCTTCAATGA  200
      |||| |||| |||||||   |||||||||||||||| ||||| |||||||
seq2  TTGA-TCTA-CATGCTT--GTGATGTGTTTCTTTGC-TCTGC-TCAATGA  179

seq1  TAAATCTTGTGCTGATGAATTCTGGCTTGATAAATACATAAGTACCTACC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATC-TGTGCTGATGAATTCTGGCTTGATAAATACATAAGTACCTACC  228

seq1  ATGTTCATGGCAATTACTATGAGAGCTGTTAGTGTGTTACCTTCACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGGCAATTACTATGAGAGCTGTTAGTGTGTTACCTTCACACAT  278

seq1  GATGCTTTCTTCTCCATTTTATAAGAAAGTGAGAAATATCAATTATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTCTTCTCCATTTTATAAGAAAGTGAGAAATATCAATTATAAAA  328

seq1  AACAATAGAAATAAAACCTGGTTAATTGCTTCATGTTAAGTTGCTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAAATAAAACCTGGTTAATTGCTTCATGTTAAGTTGCTCATGC  378

seq1  TGCAGACATATGTCAAATTTGTAAAGGTAGCATTTCGTATTTGAACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACATATGTCAAATTTGTAAAGGTAGCATTTCGTATTTGAACTTCA  428

seq1  TGATCTTTTGCCAATGTAAACATATTTGCCAATCTGGTTAGAGCTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTGCCAATGTAAACATATTTGCCAATCTGGTTAGAGCTTAAAT  478

seq1  AGTGGAGTAGATGAATTATCTTTTTTTCTGTCTTTCTTTTCTTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTAGATGAATTATCTTTTTTTCTGTCTTTCTTTTCTTTTTTTTC  528

seq1  CTTTTTTCTTCTTTTTTTTGTGACTTCAGTGGGTCTAGAATCCACTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTCTTTTTTTTGTGACTTCAGTGGGTCTAGAATCCACTAATT  578

seq1  AGTCATAGATTTTATACAATGTTCTAGAAAATTGTGTTAAGACTTAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGATTTTATACAATGTTCTAGAAAATTGTGTTAAGACTTAAGTG  628

seq1  CTGTGTTTGTCTGAGTGATTTACTGATTTACCTCTACTTCCACTAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGTCTGAGTGATTTACTGATTTACCTCTACTTCCACTAGAATA  678

seq1  ATTTAAGAGTATTTTTCTGCTGAAATTTTACTTCTACCTTTTAGTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAGTATTTTTCTGCTGAAATTTTACTTCTACCTTTTAGTTAGTT  728

seq1  AACTTTACAAAAAGTATGATGCTTACACAATAATGAGTTGGAATAGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACAAAAAGTATGATGCTTACACAATAATGAGTTGGAATAGGGGG  778

seq1  AAAACATGATGCATTTTCTAATAAGTCCACCATAAAAATCTCCTGCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATGCATTTTCTAATAAGTCCACCATAAAAATCTCCTGCTCTT  828

seq1  TAGGTTATCTTTAGATCAGTAGTTCAAGATATCCTCCCACATATCAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATCTTTAGATCAGTAGTTCAAGATATCCTCCCACATATCAGATA  878

seq1  TTTACATTACAATTCCTAACAGTGTCAAACTTACATTTATGAAATAGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTACAATTCCTAACAGTGTCAAACTTACATTTATGAAATAGCAA  928

seq1  GAAAATAATTTAATGGTTGGAGGCATCATGATAACCCTAAGAACATTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTTAATGGTTGGAGGCATCATGATAACCCTAAGAACATTATT  978

seq1  GAACTCTTGCAGCATTGGGAAGGTTGAGAACAATTGTGTTAGGATTTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTGCAGCATTGGGAAGGTTGAGAACAATTGTGTTAGGATTTACT  1028

seq1  AAATAAGAAAAAAGAAAAAAAAAAAAGAAAAAAAAGTCAGTACTTTTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAAAAGAAAAAAAAAAAAGAAAAAAAAGTCAGTACTTTTATT  1078

seq1  ATCCTAACAAAATACCAACTGAATTC  1126
      ||||||||||||||||||||||||||
seq2  ATCCTAACAAAATACCAACTGAATTC  1104