BAC Information

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BAC

Clone NameB6Ng01-312H15
Chromosome9 (Build37)
Map Location 101,999,383 - 102,173,098
singlet/doubletdoublet
Overlap geneEphb1
Upstream geneMsl2l1, 3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312H15.bB6Ng01-312H15.g
ACCGA103935GA103936
length7381,118
definitionB6Ng01-312H15.b B6Ng01-312H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,172,361 - 102,173,098)(101,999,383 - 102,000,492)
sequence
gaattctgactttgtaaagagagttcggcttggcaggcagcgggagaaaa
tgtgtgagtgactgctgccacattggaccatggcttggcacggtttctaa
tcagagatggctgagcaaatggaaatgagggttcatggagggttaataaa
gctttattgcaaaaactaaacaaagaattcatggaatgaaatgataacgg
ggagatgtccaacaatattctttgggatgtatccaagactgcaatcagtg
tcaagctaattcggtcctaattccaggaaaaaagatggagaaaaatgggt
aattagaaaagaaaatggaaacactagaggaaccatgcaaacataaatta
gatccccaaatactgacacagataatcacagccaggggtgaatcaggcct
catcccaccaggagttgactatttctcaaagtacacaggagaaagaggga
cccagaggcaataaccagccatggctaacaaagccgaaacacttgtcaga
aattaacacccggaatgtaagatagaaataacattttcattaaccagtgg
ggatgaaaaatacacttggaaaatgtaacaaacagcacacaaagccctat
cgcttcctgttgaaattacagccataattttcaaaacaaaattttatatt
ttcctctctgaggaccagaatgattcattgtacataacaggaagagagag
agggagagagagggaaggagagagagagagagagagag
gaattcccagacgctcctgctgccagagcactggcaaagctgccctggcc
tccagggagggcagtatggcaggtgggcggtgactgacggtgctaccatc
ctaagggggaatccctgggcccatggagagtggtacaggatgtcagccct
agacttccaaacaacttcctatgcctacctcctagactgtcctctctcag
aggccattagacacccctacaaatccttcctaatatagtttccctggaag
tctaggggtgcattaaggaaaacacacaaagaattgcaagcattttcacc
atggctcctttgagtagctgtcaggaattatgtggtgggttatcttcagg
gtatcattccatcttccctgtgcacatcctgcttctctgtcttgattggc
cctttaacattacccgtgtgacctttgcaagtaacatgtagtagaaagca
agaagacaccggactgtaaacatataaagttcaaaaagaacctgatgtga
cctagtgccacctctttccattcatgtggggaaacaggttcagaggggag
gagagtagcccaccgccacagcacaaacctgaaataggagttcacattta
taatcctagtacttggaaggatgctggggcagaagattgctctgagtttc
aagggcagctaggccctggggacacagtaagttccaaccagtgttggctc
cagtatgagactctgtctcaaaacaaacaaacctaacaaaacaggactca
gtccagttggtcaagtgtttggacacgcaagttcgaggacatgagtctgg
atcctcagcaatcacattaaagaaaagacctaggtacatatctgtaaaca
gggactggggaagaggcaaagacaggaatattcctggggcttcttggcta
gcccacctgggtcaaatcaaagcagtgagcttcttgtttgagtaagaaag
aagcctcaggaagtagagtcttgtcaaggaagacattcactgtctactct
ggcttccacaacatattgacattgtgccttaccactccaacacacacaca
ccaacacacactacatacccacaccacatcataaaaaaattaaccgagca
ggacttggtagaggattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_102172361_102173098
seq2: B6Ng01-312H15.b_48_785 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCCTTCCCTCTCTCTCCCTCTCTCTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCCTTCCCTCTCTCTCCCTCTCTCTCTTCCT  50

seq1  GTTATGTACAATGAATCATTCTGGTCCTCAGAGAGGAAAATATAAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTACAATGAATCATTCTGGTCCTCAGAGAGGAAAATATAAAATTT  100

seq1  TGTTTTGAAAATTATGGCTGTAATTTCAACAGGAAGCGATAGGGCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAAATTATGGCTGTAATTTCAACAGGAAGCGATAGGGCTTTGT  150

seq1  GTGCTGTTTGTTACATTTTCCAAGTGTATTTTTCATCCCCACTGGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTTGTTACATTTTCCAAGTGTATTTTTCATCCCCACTGGTTAAT  200

seq1  GAAAATGTTATTTCTATCTTACATTCCGGGTGTTAATTTCTGACAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTATTTCTATCTTACATTCCGGGTGTTAATTTCTGACAAGTGT  250

seq1  TTCGGCTTTGTTAGCCATGGCTGGTTATTGCCTCTGGGTCCCTCTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCTTTGTTAGCCATGGCTGGTTATTGCCTCTGGGTCCCTCTTTCTC  300

seq1  CTGTGTACTTTGAGAAATAGTCAACTCCTGGTGGGATGAGGCCTGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACTTTGAGAAATAGTCAACTCCTGGTGGGATGAGGCCTGATTCA  350

seq1  CCCCTGGCTGTGATTATCTGTGTCAGTATTTGGGGATCTAATTTATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCTGTGATTATCTGTGTCAGTATTTGGGGATCTAATTTATGTTT  400

seq1  GCATGGTTCCTCTAGTGTTTCCATTTTCTTTTCTAATTACCCATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTCCTCTAGTGTTTCCATTTTCTTTTCTAATTACCCATTTTTCT  450

seq1  CCATCTTTTTTCCTGGAATTAGGACCGAATTAGCTTGACACTGATTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTTTCCTGGAATTAGGACCGAATTAGCTTGACACTGATTGCAG  500

seq1  TCTTGGATACATCCCAAAGAATATTGTTGGACATCTCCCCGTTATCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATACATCCCAAAGAATATTGTTGGACATCTCCCCGTTATCATTT  550

seq1  CATTCCATGAATTCTTTGTTTAGTTTTTGCAATAAAGCTTTATTAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATGAATTCTTTGTTTAGTTTTTGCAATAAAGCTTTATTAACCCT  600

seq1  CCATGAACCCTCATTTCCATTTGCTCAGCCATCTCTGATTAGAAACCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACCCTCATTTCCATTTGCTCAGCCATCTCTGATTAGAAACCGTG  650

seq1  CCAAGCCATGGTCCAATGTGGCAGCAGTCACTCACACATTTTCTCCCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCATGGTCCAATGTGGCAGCAGTCACTCACACATTTTCTCCCGCT  700

seq1  GCCTGCCAAGCCGAACTCTCTTTACAAAGTCAGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAGCCGAACTCTCTTTACAAAGTCAGAATTC  738

seq1: chr9_101999383_102000492
seq2: B6Ng01-312H15.g_68_1185

seq1  GAATTCCCAGACGCTCCTGCTGCCAGAGCACTGGCAAAGCTGCCCTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACGCTCCTGCTGCCAGAGCACTGGCAAAGCTGCCCTGGCC  50

seq1  TCCAGGGAGGGCAGTATGGCAGGTGGGCGGTGACTGACGGTGCTACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAGGGCAGTATGGCAGGTGGGCGGTGACTGACGGTGCTACCATC  100

seq1  CTAAGGGGGAATCCCTGGGCCCATGGAGAGTGGTACAGGATGTCAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGGGAATCCCTGGGCCCATGGAGAGTGGTACAGGATGTCAGCCCT  150

seq1  AGACTTCCAAACAACTTCCTATGCCTACCTCCTAGACTGTCCTCTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCAAACAACTTCCTATGCCTACCTCCTAGACTGTCCTCTCTCAG  200

seq1  AGGCCATTAGACACCCCTACAAATCCTTCCTAATATAGTTTCCCTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTAGACACCCCTACAAATCCTTCCTAATATAGTTTCCCTGGAAG  250

seq1  TCTAGGGGTGCATTAAGGAAAACACACAAAGAATTGCAAGCATTTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGGTGCATTAAGGAAAACACACAAAGAATTGCAAGCATTTTCACC  300

seq1  ATGGCTCCTTTGAGTAGCTGTCAGGAATTATGTGGTGGGTTATCTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCTTTGAGTAGCTGTCAGGAATTATGTGGTGGGTTATCTTCAGG  350

seq1  GTATCATTCCATCTTCCCTGTGCACATCCTGCTTCTCTGTCTTGATTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTCCATCTTCCCTGTGCACATCCTGCTTCTCTGTCTTGATTGGC  400

seq1  CCTTTAACATTACCCGTGTGACCTTTGCAAGTAACATGTAGTAGAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACATTACCCGTGTGACCTTTGCAAGTAACATGTAGTAGAAAGCA  450

seq1  AGAAGACACCGGACTGTAAACATATAAAGTTCAAAAAGAACCTGATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACCGGACTGTAAACATATAAAGTTCAAAAAGAACCTGATGTGA  500

seq1  CCTAGTGCCACCTCTTTCCATTCATGTGGGGAAACAGGTTCAGAGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCCACCTCTTTCCATTCATGTGGGGAAACAGGTTCAGAGGGGAG  550

seq1  GAGAGTAGCCCACCGCCACAGCACAAACCTGAAATAGGAGTTCACATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGCCCACCGCCACAGCACAAACCTGAAATAGGAGTTCACATTTA  600

seq1  TAATCCTAGTACTTGGAAGGATGCTGGGGCAGAAGATTGCTCTGAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAGTACTTGGAAGGATGCTGGGGCAGAAGATTGCTCTGAGTTTC  650

seq1  AAGGGCAGCTAGGCCCTGGGGACACAGTAAGTTCCAACCAGTGTTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGCTAGGCCCTGGGGACACAGTAAGTTCCAACCAGTGTTGGCTC  700

seq1  CAGTATGAGACTCTGTCTCAAAACAAACAAACCTAACAAAACAGGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAGACTCTGTCTCAAAACAAACAAACCTAACAAAACAGGACTCA  750

seq1  GTCCAGTTGGTCAAGTG-TTGGACACGCAAGTTCGAGGACATGAGTCTGG  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCAGTTGGTCAAGTGTTTGGACACGCAAGTTCGAGGACATGAGTCTGG  800

seq1  ATCCTCAGCAATCACATTAAAGAAAAGACCTAGGTACATATCTGTAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCAATCACATTAAAGAAAAGACCTAGGTACATATCTGTAAACA  850

seq1  GGGACTGGGGAAGAGGCAAAGACAGGAATATTCCTGGGGCTTCTTGGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGGAAGAGGCAAAGACAGGAATATTCCTGGGGCTTCTTGGCTA  900

seq1  GCCCACCT-GGTCAAATCAAAGCAGTGAGC-TCTTGTTTGAGTAAG-AAG  946
      |||||||| ||||||||||||||||||||| ||||||||||||||| |||
seq2  GCCCACCTGGGTCAAATCAAAGCAGTGAGCTTCTTGTTTGAGTAAGAAAG  950

seq1  AAGCCTCAGGAAGTAGAGTCTTGTCAAGGAAGACATTCACTGTCTACCTC  996
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCCTCAGGAAGTAGAGTCTTGTCAAGGAAGACATTCACTGTCTA-CTC  999

seq1  TGGCCTCCAC-ACATA-TGACA-TGTGCC-TACCACTCCAACACACACAC  1042
      |||| ||||| ||||| ||||| |||||| ||||||||||||||||||||
seq2  TGGCTTCCACAACATATTGACATTGTGCCTTACCACTCCAACACACACAC  1049

seq1  ACCAACACACAC-ACATACACACA-CACATCAT-AAAAAATAAACAGAAG  1089
      |||||||||||| |||||| |||| |||||||| ||||||| ||| | ||
seq2  ACCAACACACACTACATACCCACACCACATCATAAAAAAATTAACCG-AG  1098

seq1  CAAGGACATGGTAGAGGATTC  1110
      | ||||| |||||||||||||
seq2  C-AGGACTTGGTAGAGGATTC  1118