BAC Information

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BAC

Clone NameB6Ng01-312K12
Chromosome9 (Build37)
Map Location 37,725,642 - 37,726,730
singlet/doubletsinglet
Overlap geneOlfr878
Upstream genePknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852
Downstream geneGA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K12.bB6Ng01-312K12.g
ACCGA104071GA104072
length1,1651,092
definitionB6Ng01-312K12.b B6Ng01-312K12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgaaaaacatttttttaattgtagtcttgtatcagctgtagc
tcttacaatctttccagttctacttcctgagtgattcctgagacttggat
gaaagggtatgatgtgaagttcctttttaggactgagcactcaccatctt
ttattttctccctgcaaactagctatagctatctgtgttaatctcaattt
attgttaaaagaaacatctgagaggtcatcaaaagaggctgagaggtgca
ctagtctatcagtataatagaaaggcattaggaaccaatttaatactata
ttcatagcaggtaacaaccatagatacttccctatgacctgttgatctgt
ctatctagcatcagcagttgttaataataagtatggtaggcatgaatttt
gtctgtggagtaagcctgaaattcaatccaaatgttggttactcctataa
cacttataacaacattgtaccaatggatagatccttccaggtcagccatt
aacgtagctttcataattcgcatctgattaaaactgatcattacatttct
cttttgataaaatgatggacttctagtattataaatttgaacaatatcag
attactctcccaactttacataagacaagaccaacttccaaaaactgata
catttctatctccttaaatcactcagaatcattgagaaaaagctaccatg
aaagaattagtttctcactaaccttcaaagctgctgagggcatgagtgct
tatgataagtttatataacacaagtagaattatcataactccttttcaga
tctccatggtatgaactgattgtttggactgtggaattatatgcagatgg
atataatttagtccattgtttttatgaatgaaattaacaaagaatgaaaa
tgcaagaacaaaatgtatgtaaggctagacatgcttttctttaacactct
agacaattggctactaggtagatacaaacttacttttctcaatgttatga
cttgattatatggtgtctctacaaagactaatcagcaagttgggatacaa
agagtagccataagctatgatattgggggtttttatggacactagttagc
acactccacaaattgtagctatctgtctgaattcttggtacctatgtgtt
ctagagtagcctttg
gaattctatctttcttggtggttttcttctaaacatatacacaagggctc
ttggaagcatttattactctgtagccttcagcattgactctaaggtaagg
taagtaacgagatttggaggtggaaggcagtataaacagagccagcaggg
aacagtttgagcttgattttctctgtaggtgggaacttcatgtgtggttg
agaaagagtcatgaatagaataagttctgcagatccacatttaacaaagc
ctaaggcactgggctttgagataactcttggttcttgagttacttttttt
gaaagtccatgagtagccagtagaagtcatctgcttcctcatttattagg
caagaacagaatccttgttatccatgtaaataaacatcttgattctttaa
tcagtccatgggaaatgagctatgctcagtcacactattagtggcttaag
atgaagagaattgtagatgaaggaggagaggccaaagaaaagcaggcatg
catactcactggtttaccttctagagccttcttccattgtgcatgtatat
agctgtcattgtgtgttttatttcacttttctaggtgatgtctcagaaga
gaatggctccaagaaatagctcctctgtgactgaatttatccttgtggga
ttttcaaaccaaccagctctccagctgcctctcttcttcgtcttcttagg
tatctatgtgctgactgttataggcaatttgggactgatcaccttaattg
ggttgaattccagtcttcatactccaatgtactttttcctcttcaacttg
tcctttatagatttctgttattcctgtgtgttcacgccaaaaatgttgag
tgattttgtctcagaaaacattatctcctacatgggatgcatgactcaac
tgtttttcttctgtttctttgtcaattctgaatgctacgtgctggtgtca
atgggcctatgatcgctatgtgggccatttgcaatcctctgctgtacaca
gttaccatgtctcctcagtctgcactctgctgatgttttgttcatatgtg
ataggtttgcttggagcccatgggccatactggaaagcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37725642_37726730
seq2: B6Ng01-312K12.g_65_1156

seq1  GAATTCTATCTTTCTTGGTGGTTTTCTTCTAAACATATACACAAGGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTTTCTTGGTGGTTTTCTTCTAAACATATACACAAGGGCTC  50

seq1  TTGGAAGCATTTATTACTCTGTAGCCTTCAGCATTGACTCTAAGGTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCATTTATTACTCTGTAGCCTTCAGCATTGACTCTAAGGTAAGG  100

seq1  TAAGTAACGAGATTTGGAGGTGGAAGGCAGTATAAACAGAGCCAGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACGAGATTTGGAGGTGGAAGGCAGTATAAACAGAGCCAGCAGGG  150

seq1  AACAGTTTGAGCTTGATTTTCTCTGTAGGTGGGAACTTCATGTGTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTGAGCTTGATTTTCTCTGTAGGTGGGAACTTCATGTGTGGTTG  200

seq1  AGAAAGAGTCATGAATAGAATAAGTTCTGCAGATCCACATTTAACAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTCATGAATAGAATAAGTTCTGCAGATCCACATTTAACAAAGC  250

seq1  CTAAGGCACTGGGCTTTGAGATAACTCTTGGTTCTTGAGTTACTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCACTGGGCTTTGAGATAACTCTTGGTTCTTGAGTTACTTTTTTT  300

seq1  GAAAGTCCATGAGTAGCCAGTAGAAGTCATCTGCTTCCTCATTTATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCATGAGTAGCCAGTAGAAGTCATCTGCTTCCTCATTTATTAGG  350

seq1  CAAGAACAGAATCCTTGTTATCCATGTAAATAAACATCTTGATTCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAGAATCCTTGTTATCCATGTAAATAAACATCTTGATTCTTTAA  400

seq1  TCAGTCCATGGGAAATGAGCTATGCTCAGTCACACTATTAGTGGCTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCATGGGAAATGAGCTATGCTCAGTCACACTATTAGTGGCTTAAG  450

seq1  ATGAAGAGAATTGTAGATGAAGGAGGAGAGGCCAAAGAAAAGCAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGAATTGTAGATGAAGGAGGAGAGGCCAAAGAAAAGCAGGCATG  500

seq1  CATACTCACTGGTTTACCTTCTAGAGCCTTCTTCCATTGTGCATGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCACTGGTTTACCTTCTAGAGCCTTCTTCCATTGTGCATGTATAT  550

seq1  AGCTGTCATTGTGTGTTTTATTTCACTTTTCTAGGTGATGTCTCAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCATTGTGTGTTTTATTTCACTTTTCTAGGTGATGTCTCAGAAGA  600

seq1  GAATGGCTCCAAGAAATAGCTCCTCTGTGACTGAATTTATCCTTGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTCCAAGAAATAGCTCCTCTGTGACTGAATTTATCCTTGTGGGA  650

seq1  TTTTCAAACCAACCAGCTCTCCAGCTGCCTCTCTTCTTCGTCTTCTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACCAACCAGCTCTCCAGCTGCCTCTCTTCTTCGTCTTCTTAGG  700

seq1  TATCTATGTGCTGACTGTTATAGGCAATTTGGGACTGATCACCTTAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGTGCTGACTGTTATAGGCAATTTGGGACTGATCACCTTAATTG  750

seq1  GGTTGAATTCCAGTCTTCATACTCCAATGTACTTTTTCCTCTTCAACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATTCCAGTCTTCATACTCCAATGTACTTTTTCCTCTTCAACTTG  800

seq1  TCCTTTATAGATTTCTGTTATTCCTGTGTGTTCACGCCAAAAATGTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATAGATTTCTGTTATTCCTGTGTGTTCACGCCAAAAATGTTGAG  850

seq1  TGATTTTGTCTCAGAAAACATTATCTCCTACATGGGATGCATGACTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTCTCAGAAAACATTATCTCCTACATGGGATGCATGACTCAAC  900

seq1  TGTTTTTCTTCTGTTTCTTTGTCAATTCTGAATGCTACGTGCTGGTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTCTGTTTCTTTGTCAATTCTGAATGCTACGTGCTGGTGTCA  950

seq1  AT-GGCCTATGATCGCTATGT-GGCCATTTGCAATCCTCTGCTGTACACA  998
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGGGCCTATGATCGCTATGTGGGCCATTTGCAATCCTCTGCTGTACACA  1000

seq1  GTTACCATGTCTCCTCAGGTCTGCACTCTGCTGATGTTTTGTTCATATGT  1048
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTACCATGTCTCCTCA-GTCTGCACTCTGCTGATGTTTTGTTCATATGT  1049

seq1  GATAGGGTTTGC-TGGAG-CCATGGCCCATACTGG-AAGCATGC  1089
      |||| ||||||| ||||| |||||| ||||||||| ||||||||
seq2  GATA-GGTTTGCTTGGAGCCCATGGGCCATACTGGAAAGCATGC  1092