BAC Information

Click to search

BAC

Clone NameB6Ng01-312L03
Chromosome9 (Build37)
Map Location 37,268,579 - 37,405,382
singlet/doubletdoublet
Overlap geneBC024479, Esam1, Vsig2, Nrgn
Upstream geneLOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3
Downstream geneSpa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312L03.bB6Ng01-312L03.g
ACCGA104101GA104102
length1,167595
definitionB6Ng01-312L03.b B6Ng01-312L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,268,579 - 37,269,741)(37,404,788 - 37,405,382)
sequence
gaattcagctacgactttcttcctgaagagtggtttcttcagatgagact
gtgacagtctgccaccctggtcctgagctgtcgctttttgacagtagctg
aagagaacaggaaaaatagaagaagcgcgtttcgatgtgtaatgcccatt
ttaagctagaaactcaagtagggaggcagaaacaaacaaacaaacaaaaa
ggatatggtgggatgggcaaggaagacagagtaaaaatgctaaggaataa
tacttgctatagtatattgccatgatactgtagcattgcaaccatgatac
tgtatcattgcaaccatccaacagagcaaggagggttggttgcccctggg
acttgatggggccaattctgtctccagacagaattggggcactttccagt
cttccacactatagggaagtgaggtgagtcttccatgagtcttgaaggga
tgaagaaaaggatactgggatagaaacagtcccagttacttattctggac
actgtggaggtctctctctaaagcaatatgaaatgaagtctgagtctctg
gctctgtataaagatcacagtaccataacctgtctcaccaaggctaattt
ggaaattatgttcacagcaacagtgccaagtggagttggcaaaagccctc
tgtgatgaccctgtgtttttccatttggagatgttttgttccctctacca
ctcaggggaagtaactaggttgtctgatgggttcgttggcttccttccct
ctcactcccagcctcctccaggtctgcgactttctgcctgtgctggtcaa
aatacagtgtgcatcccaatcacttggacatctgaacacccacagtttct
gattcttttcatctgggaaggggccaggagatttgaatttctaagagctg
ccgggtgactagtatggtaatggtgttgtaatagcatccttagtgagagc
ttagtctagctggaaaggaacaattctaggcttctgaaattggtggaagc
agaagcactcagttcttggaaaagctgagttactttcacttctcaaggaa
gagatccacaagcgaatgcctggtagatccgcaaggtggtggcgcgtgca
atggcgcgtgcgatcgttctgtctgtatggaagttggagggaagctctat
agattctaattaactct
gaattctcagctacttcttcagcaccatgtctggctgcatgccactgcac
ttcccaccatgatgacaatggactaagtctctgaatctctaagccaaacc
taattaaatgctttataagagttgccacggttgtggtgtcccttcaccct
agctaagacacacacacaaaagtgtgctctgtagaaaaaaaagtttgatg
tttgtcaaaatgaatttttcaataaatattactttcagtgtataaagaaa
aggagttatcgttatggtcatggagcaatccttttttataaataaaacca
agaataccctggagggtcttgttcttctgtagtgttttatagagcttcat
cagttagtgtgtctctgactcagaaatgaatcagggtaagttctaaactg
ttgctaccgttctgcttctgttcatattgtagcatgcactgtttgtctta
aaggaaactgaataaggatcgcctacttctccaggtcaatttctatcaag
tcaatttaaatagtaactttttttaaagttttgatttttttctccatgaa
attattctctttttttgcggcggtggagggggttgggtagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37268579_37269741
seq2: B6Ng01-312L03.b_47_1213

seq1  GAATTCAGCTACGACTTTCTTCCTGAAGAGTGGTTTCTTCAGATGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTACGACTTTCTTCCTGAAGAGTGGTTTCTTCAGATGAGACT  50

seq1  GTGACAGTCTGCCACCCTGGTCCTGAGCTGTCGCTTTTTGACAGTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTCTGCCACCCTGGTCCTGAGCTGTCGCTTTTTGACAGTAGCTG  100

seq1  AAGAGAACAGGAAAAATAGAAGAAGCGCGTTTCGATGTGTAATGCCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACAGGAAAAATAGAAGAAGCGCGTTTCGATGTGTAATGCCCATT  150

seq1  TTAAGCTAGAAACTCAAGTAGGGAGGCAGAAACAAACAAACAAACAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTAGAAACTCAAGTAGGGAGGCAGAAACAAACAAACAAACAAAAA  200

seq1  GGATATGGTGGGATGGGCAAGGAAGACAGAGTAAAAATGCTAAGGAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGGTGGGATGGGCAAGGAAGACAGAGTAAAAATGCTAAGGAATAA  250

seq1  TACTTGCTATAGTATATTGCCATGATACTGTAGCATTGCAACCATGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTATAGTATATTGCCATGATACTGTAGCATTGCAACCATGATAC  300

seq1  TGTATCATTGCAACCATCCAACAGAGCAAGGAGGGTTGGTTGCCCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATTGCAACCATCCAACAGAGCAAGGAGGGTTGGTTGCCCCTGGG  350

seq1  ACTTGATGGGGCCAATTCTGTCTCCAGACAGAATTGGGGCACTTTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGGGGCCAATTCTGTCTCCAGACAGAATTGGGGCACTTTCCAGT  400

seq1  CTTCCACACTATAGGGAAGTGAGGTGAGTCTTCCATGAGTCTTGAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACACTATAGGGAAGTGAGGTGAGTCTTCCATGAGTCTTGAAGGGA  450

seq1  TGAAGAAAAGGATACTGGGATAGAAACAGTCCCAGTTACTTATTCTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAGGATACTGGGATAGAAACAGTCCCAGTTACTTATTCTGGAC  500

seq1  ACTGTGGAGGTCTCTCTCTAAAGCAATATGAAATGAAGTCTGAGTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGGTCTCTCTCTAAAGCAATATGAAATGAAGTCTGAGTCTCTG  550

seq1  GCTCTGTATAAAGATCACAGTACCATAACCTGTCTCACCAAGGCTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTATAAAGATCACAGTACCATAACCTGTCTCACCAAGGCTAATTT  600

seq1  GGAAATTATGTTCACAGCAACAGTGCCAAGTGGAGTTGGCAAAAGCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATGTTCACAGCAACAGTGCCAAGTGGAGTTGGCAAAAGCCCTC  650

seq1  TGTGATGACCCTGTGTTTTTCCATTTGGAGATGTTTTGTTCCCTCTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGACCCTGTGTTTTTCCATTTGGAGATGTTTTGTTCCCTCTACCA  700

seq1  CTCAGGGGAAGTAACTAGGTTGTCTGATGGGTTCGTTGGCTTCCTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGAAGTAACTAGGTTGTCTGATGGGTTCGTTGGCTTCCTTCCCT  750

seq1  CTCACTCCCAGCCTCCTCCAGGTCTGCGACTTTCTGCCTGTGCTGGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCCAGCCTCCTCCAGGTCTGCGACTTTCTGCCTGTGCTGGTCAA  800

seq1  AATACAGTGTGCATCCCAATCACTTGGACATCTGAACACCCACAGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTGTGCATCCCAATCACTTGGACATCTGAACACCCACAGTTTCT  850

seq1  GATTCTTTTCATCTGGGAAGGGGCCAGGAGATTTGAATTTCTAAGAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTCATCTGGGAAGGGGCCAGGAGATTTGAATTTCTAAGAGCTG  900

seq1  CCGGGTGACTAGTATGGTAATGGTGTTGTAATAGCATCCTTAGTGAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGACTAGTATGGTAATGGTGTTGTAATAGCATCCTTAGTGAGAGC  950

seq1  TTAGTCTAGCTGGAAAGGAACAA-TCTAGGCTTCTGAAATTGGTGGAAGC  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAGTCTAGCTGGAAAGGAACAATTCTAGGCTTCTGAAATTGGTGGAAGC  1000

seq1  AGAAGCACTCAG-TCCTGGAAAAGCTGAGGTACCTTCAC-TCTCAAGG-A  1046
      |||||||||||| || ||||||||||||| ||| ||||| |||||||| |
seq2  AGAAGCACTCAGTTCTTGGAAAAGCTGAGTTACTTTCACTTCTCAAGGAA  1050

seq1  GAGATCCACAAGCGAATGCCTGGAAGATCCGCAGGGTG--TGCGCGTGCA  1094
      ||||||||||||||||||||||| ||||||||| ||||   |||||||||
seq2  GAGATCCACAAGCGAATGCCTGGTAGATCCGCAAGGTGGTGGCGCGTGCA  1100

seq1  --TGCGCGTGCG-TCTGTCTGTCTGTATTTGGAAATTTGGAGGAGTCTCT  1141
         ||||||||| ||  ||||||||||  ||||| || |  |||  ||||
seq2  ATGGCGCGTGCGATCGTTCTGTCTGTA--TGGAAGTTGGAGGGAAGCTCT  1148

seq1  TAATAGATTCATAATTTACTCT  1163
        |||||||| ||||| |||||
seq2  --ATAGATTC-TAATTAACTCT  1167

seq1: chr9_37404788_37405382
seq2: B6Ng01-312L03.g_66_660 (reverse)

seq1  ATATTCTACCCAACCCCCTCCACCGCCGCAAAAAAAGAGAATAATTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTACCCAACCCCCTCCACCGCCGCAAAAAAAGAGAATAATTTCAT  50

seq1  GGAGAAAAAAATCAAAACTTTAAAAAAAGTTACTATTTAAATTGACTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAAATCAAAACTTTAAAAAAAGTTACTATTTAAATTGACTTGA  100

seq1  TAGAAATTGACCTGGAGAAGTAGGCGATCCTTATTCAGTTTCCTTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTGACCTGGAGAAGTAGGCGATCCTTATTCAGTTTCCTTTAAGA  150

seq1  CAAACAGTGCATGCTACAATATGAACAGAAGCAGAACGGTAGCAACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTGCATGCTACAATATGAACAGAAGCAGAACGGTAGCAACAGTT  200

seq1  TAGAACTTACCCTGATTCATTTCTGAGTCAGAGACACACTAACTGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTACCCTGATTCATTTCTGAGTCAGAGACACACTAACTGATGAA  250

seq1  GCTCTATAAAACACTACAGAAGAACAAGACCCTCCAGGGTATTCTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATAAAACACTACAGAAGAACAAGACCCTCCAGGGTATTCTTGGTT  300

seq1  TTATTTATAAAAAAGGATTGCTCCATGACCATAACGATAACTCCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAAAAAGGATTGCTCCATGACCATAACGATAACTCCTTTTCT  350

seq1  TTATACACTGAAAGTAATATTTATTGAAAAATTCATTTTGACAAACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTGAAAGTAATATTTATTGAAAAATTCATTTTGACAAACATCA  400

seq1  AACTTTTTTTTCTACAGAGCACACTTTTGTGTGTGTGTCTTAGCTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTTTCTACAGAGCACACTTTTGTGTGTGTGTCTTAGCTAGGGT  450

seq1  GAAGGGACACCACAACCGTGGCAACTCTTATAAAGCATTTAATTAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGACACCACAACCGTGGCAACTCTTATAAAGCATTTAATTAGGTTT  500

seq1  GGCTTAGAGATTCAGAGACTTAGTCCATTGTCATCATGGTGGGAAGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAGATTCAGAGACTTAGTCCATTGTCATCATGGTGGGAAGTGCA  550

seq1  GTGGCATGCAGCCAGACATGGTGCTGAAGAAGTAGCTGAGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGCAGCCAGACATGGTGCTGAAGAAGTAGCTGAGAATTC  595