BAC Information

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BAC

Clone NameB6Ng01-312M09
Chromosome9 (Build37)
Map Location 10,729,704 - 10,898,886
singlet/doubletdoublet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312M09.bB6Ng01-312M09.g
ACCGA104161GA104162
length1,0971,129
definitionB6Ng01-312M09.b B6Ng01-312M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,897,775 - 10,898,886)(10,729,704 - 10,730,841)
sequence
gaattctttggaaaaatagtgttattgcatcatttgataacaaactagaa
agcatacctcttaaacaattctttctcctgaattttaatatttaaatgtc
aagttacatatacattgtaggtttattattacaatgttagaaaatgaaat
gaaaaagaagaatgtataatatatttagattatctgaaacaaagttctat
gtttaactgaataataaaaattattcaggattgataaagattctaaaagc
tacagtaaagttgatatctttaataattgctaggatttctcacataatgt
tattttagtgatgaattgtcttgaagctttaatattcaaattgtgataaa
tatatgtctgtaggtgtgaataagaattaatttaaatgttaggtattttt
gtcctttaaatattaaatatctagaaattcaaaatctaaatgtattatag
acagcatgaggaggtgttgctgaagtgatttatctgccctatgcaaggct
ttttggaatctaaatatgtccttaaaatttacaagtagttcttgtagaaa
ctataaaacatccttcagatacaattaatgagcaatccttgatagtcttt
gacttattaatttatttggtgacttattttcctaaaatgtgttttaattc
tttcagtaatcttaaaaagactgcctacttgagatttacattcattctct
gaagtttgagattataaaaatttacaatatagattatgttaccttgtacg
actgtattaatgtgctcctcatgttttcaggggcattgtaactatacaac
ccgctgaaccagaatcaagaaaagctctcttactcttaagcttctgtgct
aattactcgcatgagcttcagagtccaggtgcagttctaactaaaaggaa
aggacactatgtagatgaagcatggagggagggggcggggcgagaacaca
tttattgtctacagacaagattttcccattattctttggatagcgctata
ttttcttagatctcctagtgcttatttcaccgtgggttccagctctgtgt
tagcttgtgtctcaagaagtctaagttatttactactgggtgttcta

gaattcttccaaggtgtcctaggggaagccctttaagccttttattattt
tctctaaatgtttaaatttgtgtcttttgcattctgactaacaatttctt
tccaggaaataaaatatgctttactctttctccctgtttattggcctcat
gctgtctcctgatttcttataatttgtaacagttttaactttcaagtggc
aaaaataatttcagtcttctttcaaggtaaaaaaagcctataaattaaat
attgaaaaagacaaaaaatataggatgataaatgatagtcatttatatta
aaaatgtagtatcccttacaaattggcaaatgtcatatttcattaatcta
acttttatcctgtaagcgtttgttaaacttaataaacagcaatattctca
atgtgttatttaaaactcagtattcagtaaagcttttggctaaagtaagc
aatactaaaatatgaaaatttcttatgcatttatttattcaatataccct
gaataaccttaggcatttaatgacatgacagaaagactatcctataactg
aagaaaattaaatataattagtgtattagcattttgtttatatgcatttg
tggcctcaatataaagatgaagaccagaggaaagtatttggaagtctgct
ttcccattgtggattactggtattgggctgaggtcatctcttagattcat
ggcctgctccctctgagccatctagtaagaacccaaataatatttataaa
gtactaatataatgtgtggtctgtagaatatacatttattaagaaataga
ggttcaattggtatgatacatttttgaagatatataaaatagcatataag
tattctgtaaaatataagcaattagaagaaaatggaatacacaaatggca
ataagtaaaatttgtatacaaatcctaatgccattatttaataattaata
tgtcagactggagagatctcagcagttaaatgcactggctgctcatgcag
aaactagttttattcaagcacccacatagtgatacattgtcttctaattc
agttccaagggtctcatgcactctctggaatctgcagcaattatgtgaga
acagaaagtctctgctggcaattctattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10897775_10898886
seq2: B6Ng01-312M09.b_46_1142 (reverse)

seq1  TAGAACAACACAGTAGTAAAATAACTTAGACTCTGTGAAGGAACAC-AGC  49
      |||||| || ||||||| ||||||||||||||   |||    |||| |||
seq2  TAGAAC-ACCCAGTAGT-AAATAACTTAGACTTCTTGA---GACACAAGC  45

seq1  TAACACAGAGCTGGGACCCAC-GTGAAATAAGCCAACCTAGGAGATTCCT  98
      |||||||||||||| |||||| |||||||||||    |||||||||  ||
seq2  TAACACAGAGCTGGAACCCACGGTGAAATAAGC---ACTAGGAGAT--CT  90

seq1  AAAGAAAAATTATAGCGCTATCCAAAGAATAATTGGGAAAATTCTTTTGT  148
       |||||||  |||||||||||||||||||||| ||||||||   | ||||
seq2  -AAGAAAA--TATAGCGCTATCCAAAGAATAA-TGGGAAAA---TCTTGT  133

seq1  CTGTAGACAATTAATGTGTTCTCGCCCCGCCCCCTCCCTCCATGCTTCAT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACAATAAATGTGTTCTCGCCCCGCCCCCTCCCTCCATGCTTCAT  183

seq1  CTACATAGTGTCCTTTCCTTTTAGTTAGAACTGCACCTGGACTCTGAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTGTCCTTTCCTTTTAGTTAGAACTGCACCTGGACTCTGAAGC  233

seq1  TCATGCGAGTAATTAGCACAGAAGCTTAAGAGTAAGAGAGCTTTTCTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGAGTAATTAGCACAGAAGCTTAAGAGTAAGAGAGCTTTTCTTGA  283

seq1  TTCTGGTTCAGCGGGTTGTATAGTTACAATGCCCCTGAAAACATGAGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCAGCGGGTTGTATAGTTACAATGCCCCTGAAAACATGAGGAG  333

seq1  CACATTAATACAGTCGTACAAGGTAACATAATCTATATTGTAAATTTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAATACAGTCGTACAAGGTAACATAATCTATATTGTAAATTTTTA  383

seq1  TAATCTCAAACTTCAGAGAATGAATGTAAATCTCAAGTAGGCAGTCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAAACTTCAGAGAATGAATGTAAATCTCAAGTAGGCAGTCTTTT  433

seq1  TAAGATTACTGAAAGAATTAAAACACATTTTAGGAAAATAAGTCACCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTACTGAAAGAATTAAAACACATTTTAGGAAAATAAGTCACCAAA  483

seq1  TAAATTAATAAGTCAAAGACTATCAAGGATTGCTCATTAATTGTATCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATAAGTCAAAGACTATCAAGGATTGCTCATTAATTGTATCTGA  533

seq1  AGGATGTTTTATAGTTTCTACAAGAACTACTTGTAAATTTTAAGGACATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTTTATAGTTTCTACAAGAACTACTTGTAAATTTTAAGGACATA  583

seq1  TTTAGATTCCAAAAAGCCTTGCATAGGGCAGATAAATCACTTCAGCAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCCAAAAAGCCTTGCATAGGGCAGATAAATCACTTCAGCAACA  633

seq1  CCTCCTCATGCTGTCTATAATACATTTAGATTTTGAATTTCTAGATATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATGCTGTCTATAATACATTTAGATTTTGAATTTCTAGATATTT  683

seq1  AATATTTAAAGGACAAAAATACCTAACATTTAAATTAATTCTTATTCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAGGACAAAAATACCTAACATTTAAATTAATTCTTATTCACA  733

seq1  CCTACAGACATATATTTATCACAATTTGAATATTAAAGCTTCAAGACAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGACATATATTTATCACAATTTGAATATTAAAGCTTCAAGACAAT  783

seq1  TCATCACTAAAATAACATTATGTGAGAAATCCTAGCAATTATTAAAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTAAAATAACATTATGTGAGAAATCCTAGCAATTATTAAAGATA  833

seq1  TCAACTTTACTGTAGCTTTTAGAATCTTTATCAATCCTGAATAATTTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTACTGTAGCTTTTAGAATCTTTATCAATCCTGAATAATTTTTA  883

seq1  TTATTCAGTTAAACATAGAACTTTGTTTCAGATAATCTAAATATATTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGTTAAACATAGAACTTTGTTTCAGATAATCTAAATATATTATA  933

seq1  CATTCTTCTTTTTCATTTCATTTTCTAACATTGTAATAATAAACCTACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTTTTTCATTTCATTTTCTAACATTGTAATAATAAACCTACAA  983

seq1  TGTATATGTAACTTGACATTTAAATATTAAAATTCAGGAGAAAGAATTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTAACTTGACATTTAAATATTAAAATTCAGGAGAAAGAATTGT  1033

seq1  TTAAGAGGTATGCTTTCTAGTTTGTTATCAAATGATGCAATAACACTATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGTATGCTTTCTAGTTTGTTATCAAATGATGCAATAACACTATT  1083

seq1  TTTCCAAAGAATTC  1112
      ||||||||||||||
seq2  TTTCCAAAGAATTC  1097


seq1: chr9_10729704_10730841
seq2: B6Ng01-312M09.g_65_1193

seq1  GAATTCTTCCAAGGTGTCCTAGGGGAAGCCCTTTAAGCCTTTTATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAGGTGTCCTAGGGGAAGCCCTTTAAGCCTTTTATTATTT  50

seq1  TCTCTAAATGTTTAAATTTGTGTCTTTTGCATTCTGACTAACAATTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATGTTTAAATTTGTGTCTTTTGCATTCTGACTAACAATTTCTT  100

seq1  TCCAGGAAATAAAATATGCTTTACTCTTTCTCCCTGTTTATTGGCCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAATAAAATATGCTTTACTCTTTCTCCCTGTTTATTGGCCTCAT  150

seq1  GCTGTCTCCTGATTTCTTATAATTTGTAACAGTTTTAACTTTCAAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCTGATTTCTTATAATTTGTAACAGTTTTAACTTTCAAGTGGC  200

seq1  AAAAATAATTTCAGTCTTCTTTCAAGGTAAAAAAAGCCTATAAATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTTCAGTCTTCTTTCAAGGTAAAAAAAGCCTATAAATTAAAT  250

seq1  ATTGAAAAAGACAAAAAATATAGGATGATAAATGATAGTCATTTATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAAGACAAAAAATATAGGATGATAAATGATAGTCATTTATATTA  300

seq1  AAAATGTAGTATCCCTTACAAATTGGCAAATGTCATATTTCATTAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGTATCCCTTACAAATTGGCAAATGTCATATTTCATTAATCTA  350

seq1  ACTTTTATCCTGTAAGCGTTTGTTAAACTTAATAAACAGCAATATTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATCCTGTAAGCGTTTGTTAAACTTAATAAACAGCAATATTCTCA  400

seq1  ATGTGTTATTTAAAACTCAGTATTCAGTAAAGCTTTTGGCTAAAGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTATTTAAAACTCAGTATTCAGTAAAGCTTTTGGCTAAAGTAAGC  450

seq1  AATACTAAAATATGAAAATTTCTTATGCATTTATTTATTCAATATACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAAATATGAAAATTTCTTATGCATTTATTTATTCAATATACCCT  500

seq1  GAATAACCTTAGGCATTTAATGACATGACAGAAAGACTATCCTATAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACCTTAGGCATTTAATGACATGACAGAAAGACTATCCTATAACTG  550

seq1  AAGAAAATTAAATATAATTAGTGTATTAGCATTTTGTTTATATGCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTAAATATAATTAGTGTATTAGCATTTTGTTTATATGCATTTG  600

seq1  TGGCCTCAATATAAAGATGAAGACCAGAGGAAAGTATTTGGAAGTCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAATATAAAGATGAAGACCAGAGGAAAGTATTTGGAAGTCTGCT  650

seq1  TTCCCATTGTGGATTACTGGTATTGGGCTGAGGTCATCTCTTAGATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGTGGATTACTGGTATTGGGCTGAGGTCATCTCTTAGATTCAT  700

seq1  GGCCTGCTCCCTCTGAGCCATCTAGTAAGAACCCAAATAATATTTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTCCCTCTGAGCCATCTAGTAAGAACCCAAATAATATTTATAAA  750

seq1  GTACTAATATAATGTGTGGTCTGTAGAATATACATTTATTAAGAAATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATATAATGTGTGGTCTGTAGAATATACATTTATTAAGAAATAGA  800

seq1  GGTTCAATTGGTATGATACATTTTTGAAGATATATAAAATAGCATATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTGGTATGATACATTTTTGAAGATATATAAAATAGCATATAAG  850

seq1  TATTCTGTAAAATATAAGCAATTAGAAGAAAATGGAATACACAAATGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTAAAATATAAGCAATTAGAAGAAAATGGAATACACAAATGGCA  900

seq1  ATAAGTAAAATTTGTATACAAATCCTAATGCCATTATTTAATAATTAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAAATTTGTATACAAATCCTAATGCCATTATTTAATAATTAATA  950

seq1  TGTCAGACTGGAGAGATCTCAGCAGTTAAATGCACTGGCTGCTCATGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACTGGAGAGATCTCAGCAGTTAAATGCACTGGCTGCTCATGCAG  1000

seq1  AAACCTAGGTTTTATTCCAAGCACCCACATAGTGGTTAACCATTGTC-TC  1049
      ||| ||| |||||||| |||||||||||||||||   |  ||||||| ||
seq2  AAA-CTA-GTTTTATT-CAAGCACCCACATAGTG---ATACATTGTCTTC  1044

seq1  TAATTTCAGTTCCAGGGGTCTCATGCACTCTCTGGAATCTGCAAGCATTA  1099
      ||| |||||||||| ||||||||||||||||||||||||||||   ||||
seq2  TAA-TTCAGTTCCAAGGGTCTCATGCACTCTCTGGAATCTGCAGCAATTA  1093

seq1  TGTGAGGAACAG-AAGTCTCTGCTGGCAAAATTTCTATTC  1138
      ||||| |||||| ||||||||||||||||   ||||||||
seq2  TGTGA-GAACAGAAAGTCTCTGCTGGCAA---TTCTATTC  1129


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