BAC Information

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BAC

Clone NameB6Ng01-314G13
Chromosome9 (Build37)
Map Location 7,595,043 - 7,596,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27
Downstream geneMmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G13.bB6Ng01-314G13.g
ACCGA105354GA105355
length1,0531,153
definitionB6Ng01-314G13.b B6Ng01-314G13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcaagactgactaaatcagaaaatttagccatgggatagctg
tgcctgtttaaaacaagctctctaggtaatttggactctctctctctctc
tctctctctctctctctctctctctctctctctctcacacacacacacac
acacacacacacacacgcatgcacgcactacactaacagtcatttcagaa
tggagcagaagtgagggctattgaaaaagagtcggggagcacacggggct
tgggaacttgctagacacacctatcaggccctgccctcccaagattttga
cctaattgtacaacaattgatcatttctttctgttgattctcgttgcatc
agtgattcataatctcagctttaaaacacttaaatgtggagagaaagatg
caccctgttcacctttgtgaggtgaaagccaccagcagctgaactgtgga
ttgagaagagaaccaggccaccttaggtcaacccctgcacagcctagggt
caacaggtttagctgtgtttgcctcagcttacaggcgttggcacacaggc
taggttctgcttgtggggcatggaccagctgcaggtcagggcgggagagt
cttggttctgctcatgatcactagatggcagcactggacttcagcttcca
caggaaacatcccgagcctgcacagccaggctctgctgtctggtgccaac
tccaagcttttcggtttcataatccttagaggcttgtgcatatcggcacc
aacacagggagcacagaaggcacaagcgaggctatgatttatttccttgt
ttcgctccaacatgtgatcatctcattacatacactcctctggcctcctt
ggtcttggtcagtgttgtggactctctcttgctgggataaacactctgat
cagaagcaacttgggggagggagggtttatttgggcttaacactttccag
gtcatggtccatcatgggaggggaattcagagaaaagcaggagattggaa
gcaaaacatgggagggaaccactgccttgcaaggctacctccctctagct
cac
gaattcactgccataaatcaaaccatggattccaccgcgcctctcagagc
cctcccccagctgctcccatgcactcgagtgggtcagcacagtgccctcg
ctttctgccctaagaagcagtccctgcacccggctctgagattgctaaag
gcacagtctgaggactgaggacctgcagctgggacccggagatgacaagc
ccagagtcccccagcagatgaagctcttgacatcacttctgccttttctt
ttgagacctgtgggcaacccgcccatagacaggcagtctctacagaccct
cctttctcatcggctgatctgtacaattggaacgctgggttccctctgga
ccgggcagattagaactacaacacggctcaaggtaaggagaggttgacag
tttacaggctgggctctagtctaaagggagcgatgagacgccccaccaat
ttggctaaggtaagagaagtgatgcagggccctacagagcccccatctgt
tccgtctgtttttctagaaagattgatagaagcttatagatactatactc
cttttaacccgacctctgagggttaacaagcctcggttgctatggctttt
aaatattacattccatgcctttacaagatttagttaaggaggcagaaaag
gtgtatcacaagagagaaacagaggaagagaagagaaagagggaaagcga
gaagaagaagagagggagaataagagggaaagaagacaggagaggaattt
aagcaggattttggccgcagtagtaggggaacgtaaaggaacaggccaga
gaatagacagacagggtatctgggcaacaaggaacccagacctgaaagga
agaagatctgtccagaagattttagagaaaggaccaatgtgcctattgca
aggaaaaaggacactgggcacgggaatgcccaaagaagaaggaaagggcc
cctaagatcctgactctgaaagatgacgaataggggagacgggctcgacc
cctccccgagcctagtgtaacctgatggtggaggggaccccccatgactt
ttaatgaacacagggcagaagccattcttgtgttgaaacatcacttggta
attcaaaataaagaacatagtgaattggaagcccactgtttctcggaaag
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_7595043_7596080
seq2: B6Ng01-314G13.b_44_1096 (reverse)

seq1  GTGAGCTAGA--GAGGTAGCC-TGCAA-GCAGTG--TTCCTCCATTGTTT  44
      ||||||||||  ||||||||| ||||| ||||||  | |||||  |||||
seq2  GTGAGCTAGAGGGAGGTAGCCTTGCAAGGCAGTGGTTCCCTCCCATGTTT  50

seq1  TGCTT-CAATCTCCTGCTTTTCTCTG-ATTCCC--TCCATGGTGGACCAT  90
      ||||| |||||||||||||||||||| ||||||   ||||| ||||||||
seq2  TGCTTCCAATCTCCTGCTTTTCTCTGAATTCCCCTCCCATGATGGACCAT  100

seq1  GACCTGG-AAGTG-TAAG-CCAAATAAACCCTCCCT-CCCCAAGTTGCTT  136
      ||||||| ||||| |||| ||||||||||||||||| |||||||||||||
seq2  GACCTGGAAAGTGTTAAGCCCAAATAAACCCTCCCTCCCCCAAGTTGCTT  150

seq1  CTGATCAGAGTGTTTATCCCAGCAAGAGAGAGTCCACAACACTGACCAAG  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGAGTGTTTATCCCAGCAAGAGAGAGTCCACAACACTGACCAAG  200

seq1  ACCAAGGAGGCCAGAGGAGTGTATGTAATGAGATGATCACATGTTGGAGC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGAGGCCAGAGGAGTGTATGTAATGAGATGATCACATGTTGGAGC  250

seq1  GAAACAAGGAAATAAATCATAGCCTCGCTTGTGCCTTCTGTGCTCCCTGT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGAAATAAATCATAGCCTCGCTTGTGCCTTCTGTGCTCCCTGT  300

seq1  GTTGGTGCCGATATGCACAAGCCTCTAAGGATTATGAAACCG-AAAGCTT  335
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTGGTGCCGATATGCACAAGCCTCTAAGGATTATGAAACCGAAAAGCTT  350

seq1  GGAGTTGGCACCAGACAGCAGAGCCTGGCTGTGCAGGCTCGGGATGTTTC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGCACCAGACAGCAGAGCCTGGCTGTGCAGGCTCGGGATGTTTC  400

seq1  CTGTGGAAGCTGAAGTCCAGTGCTGCCATCTAGTGATCATGAGCAGAACC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAGCTGAAGTCCAGTGCTGCCATCTAGTGATCATGAGCAGAACC  450

seq1  AAGACTCTCCCGCCCTGACCTGCAGCTGGTCCATGCCCCACAAGCAGAAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCCCGCCCTGACCTGCAGCTGGTCCATGCCCCACAAGCAGAAC  500

seq1  CTAGCCTGTGTGCCAACGCCTGTAAGCTGAGGCAAACACAGCTAAACCTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGTGTGCCAACGCCTGTAAGCTGAGGCAAACACAGCTAAACCTG  550

seq1  TTGACCCTAGGCTGTGCAGGGGTTGACCTAAGGTGGCCTGGTTCTCTTCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTAGGCTGTGCAGGGGTTGACCTAAGGTGGCCTGGTTCTCTTCT  600

seq1  CAATCCACAGTTCAGCTGCTGGTGGCTTTCACCTCACAAAGGTGAACAGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCACAGTTCAGCTGCTGGTGGCTTTCACCTCACAAAGGTGAACAGG  650

seq1  GTGCATCTTTCTCTCCACATTTAAGTGTTTTAAAGCTGAGATTATGAATC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTTTCTCTCCACATTTAAGTGTTTTAAAGCTGAGATTATGAATC  700

seq1  ACTGATGCAACGAGAATCAACAGAAAGAAATGATCAATTGTTGTACAATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCAACGAGAATCAACAGAAAGAAATGATCAATTGTTGTACAATT  750

seq1  AGGTCAAAATCTTGGGAGGGCAGGGCCTGATAGGTGTGTCTAGCAAGTTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAATCTTGGGAGGGCAGGGCCTGATAGGTGTGTCTAGCAAGTTC  800

seq1  CCAAGCCCCGTGTGCTCCCCGACTCTTTTTCAATAGCCCTCACTTCTGCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCCGTGTGCTCCCCGACTCTTTTTCAATAGCCCTCACTTCTGCT  850

seq1  CCATTCTGAAATGACTGTTAGTGTAGTGCGTGCATGCGTGTGTGTGTGTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGAAATGACTGTTAGTGTAGTGCGTGCATGCGTGTGTGTGTGTG  900

seq1  TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  950

seq1  AGAGAGAGAGAGAGAGAGTCCAAATTACCTAGAGAGCTTGTTTTAAACAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGTCCAAATTACCTAGAGAGCTTGTTTTAAACAG  1000

seq1  GCACAGCTATCCCATGGCTAAATTTTCTGATTTAGTCAGTCTTGAATGAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTATCCCATGGCTAAATTTTCTGATTTAGTCAGTCTTGAATGAA  1050

seq1  TTC  1038
      |||
seq2  TTC  1053